Guide to the Human Genome
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Name: LACE1 Sequence: fasta or formatted (481aa) NCBI GI: 21918872
Description:

lactation elevated 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         38           3
 C cysteine            2.3         11           1
 D aspartate           6.0         29           2
 E glutamate           7.1         34           3
 F phenylalanine       5.2         25           1
 G glycine             5.2         25           1
 H histidine           2.5         12           2
 I isoleucine          4.6         22           2
 K lysine              6.7         32           2
 L leucine            11.4         55           2
 M methionine          2.7         13           1
 N asparagine          2.9         14           1
 P proline             4.4         21           2
 Q glutamine           4.4         21           1
 R arginine            6.2         30           2
 S serine              5.6         27           2
 T threonine           5.6         27           1
 V valine              5.0         24           4
 W tryptophan          0.8          4           1
 Y tyrosine            3.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lactation elevated 1 
VCP                   0.008   valosin-containing protein 
ATAD2B                0.007   ATPase family, AAA domain containing 2B 
ATAD2                 0.007   ATPase family, AAA domain containing 2 
NLRP4                 0.007   NLR family, pyrin domain containing 4 
SPATA5                0.006   spermatogenesis associated 5 
PEX1                  0.006   peroxin1 
PSMC1                 0.006   proteasome 26S ATPase subunit 1 
KIF2B                 0.005   kinesin family member 2B 
TMC6                  0.005   transmembrane channel-like 6 
TMC6                  0.005   transmembrane channel-like 6 
TMEM57                0.005   transmembrane protein 57 
TOR1B                 0.005   torsin family 1, member B (torsin B) 
ATAD1                 0.005   ATPase family, AAA domain containing 1 
CYP3A5                0.004   cytochrome P450, family 3, subfamily A, polypeptide 5...
PSMC3                 0.004   proteasome 26S ATPase subunit 3 
DIS3L2                0.004   DIS3 mitotic control homolog (S. cerevisiae)-like 2...
NAP1L5                0.004   nucleosome assembly protein 1-like 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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