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Search of human proteins with 217416415
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
(328 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens] 630 0.0
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens] 541 e-154
gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens] 325 4e-89
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens] 100 2e-21
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens] 99 4e-21
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens] 99 4e-21
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens] 73 3e-13
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens] 69 7e-12
gi|153946430 X-ray repair cross complementing protein 3 [Homo sa... 60 2e-09
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa... 60 2e-09
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi... 60 2e-09
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens] 53 3e-07
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens] 36 0.054
gi|38788372 aquarius [Homo sapiens] 35 0.070
gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens] 34 0.20
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens] 33 0.27
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi... 33 0.35
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 31 1.3
gi|154091028 sorting nexin 29 [Homo sapiens] 30 2.9
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 29 5.0
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 29 5.0
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens] 29 5.0
gi|31377557 hypothetical protein LOC131583 [Homo sapiens] 29 5.0
gi|198041928 FYVE, RhoGEF and PH domain containing 4 [Homo sapiens] 29 6.6
gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre... 28 8.6
gi|226491350 tubulin polymerization-promoting protein family mem... 28 8.6
gi|58331189 T-cell lymphoma invasion and metastasis 2 isoform b ... 28 8.6
gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a ... 28 8.6
gi|24308257 vesicle amine transport protein 1 homolog (T. califo... 28 8.6
gi|24415404 MDN1, midasin homolog [Homo sapiens] 28 8.6
>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
Length = 328
Score = 630 bits (1625), Expect = 0.0
Identities = 328/328 (100%), Positives = 328/328 (100%)
Query: 1 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ 60
MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ
Sbjct: 1 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ 60
Query: 61 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM 120
FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM
Sbjct: 61 FSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCM 120
Query: 121 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD 180
AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD
Sbjct: 121 AANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLD 180
Query: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD 240
VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD
Sbjct: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARD 240
Query: 241 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR 300
LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR
Sbjct: 241 LGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR 300
Query: 301 QPTGFQEMVDIGTWGTSEQSATLQGDQT 328
QPTGFQEMVDIGTWGTSEQSATLQGDQT
Sbjct: 301 QPTGFQEMVDIGTWGTSEQSATLQGDQT 328
>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
Length = 348
Score = 541 bits (1393), Expect = e-154
Identities = 293/348 (84%), Positives = 297/348 (85%), Gaps = 20/348 (5%)
Query: 1 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ 60
MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYK A L
Sbjct: 1 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG 60
Query: 61 FSAFPVNGADLYEELKTSTAILSTGIGS--------------------LDKLLDAGLYTG 100
V + ++ + G G LDKLLDAGLYTG
Sbjct: 61 LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG 120
Query: 101 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ 160
EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
Sbjct: 121 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ 180
Query: 161 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ 220
AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
Sbjct: 181 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ 240
Query: 221 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT 280
REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
Sbjct: 241 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT 300
Query: 281 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 328
IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
Sbjct: 301 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 348
>gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]
Length = 216
Score = 325 bits (832), Expect = 4e-89
Identities = 168/169 (99%), Positives = 169/169 (100%)
Query: 160 QAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQ 219
+AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQ
Sbjct: 48 KAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQ 107
Query: 220 QREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLD 279
QREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLD
Sbjct: 108 QREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLD 167
Query: 280 TIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 328
TIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
Sbjct: 168 TIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 216
Score = 111 bits (277), Expect = 1e-24
Identities = 66/109 (60%), Positives = 79/109 (72%), Gaps = 4/109 (3%)
Query: 1 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRV-LLA 59
MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKA ALRR+ ++
Sbjct: 1 MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKA-EALRRIQVVH 59
Query: 60 QFSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGG 108
F F + D+ +EL+ + A TG K++ T V+ ++GG
Sbjct: 60 AFDIFQM--LDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGG 106
>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
Length = 350
Score = 100 bits (249), Expect = 2e-21
Identities = 94/356 (26%), Positives = 155/356 (43%), Gaps = 56/356 (15%)
Query: 11 GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFP----V 66
GL++E+ L H+I T D + E+ + GLSY+ + L + + + P
Sbjct: 10 GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVSRACAPKMQTA 67
Query: 67 NGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA- 125
G S A LST + +LD+ L G+ G +TEI G PG GKTQ C+ M+
Sbjct: 68 YGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATL 127
Query: 126 ----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEALRRIQVVHAFDIFQMLD 180
GL+ V+Y+D+ +A RL+++ +++ + + + L VH + +
Sbjct: 128 PTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDE 187
Query: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLALMMQLARELKT 236
VLQ + + + S +K+V++DSV +VV L G +E + + A LK
Sbjct: 188 VLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
Query: 237 LARDLGMAVVVTNHITRDRD------------------------SGRLKPALGRSWSFVP 272
LA + + V++TN IT S + ALG +WS
Sbjct: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
Query: 273 STRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWGTSEQSATLQGDQ 327
+TR++L ++ RR +AKS P T F + E+ LQG +
Sbjct: 305 NTRLILQYLDSE-----RRQILIAKSPLAPFTSF-------VYTIKEEGLVLQGQE 348
>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
Length = 384
Score = 99.4 bits (246), Expect = 4e-21
Identities = 88/330 (26%), Positives = 146/330 (44%), Gaps = 48/330 (14%)
Query: 11 GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFP----V 66
GL++E+ L H+I T D + E+ + GLSY+ + L + + + P
Sbjct: 10 GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVSRACAPKMQTA 67
Query: 67 NGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA- 125
G S A LST + +LD+ L G+ G +TEI G PG GKTQ C+ M+
Sbjct: 68 YGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATL 127
Query: 126 ----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEALRRIQVVHAFDIFQMLD 180
GL+ V+Y+D+ +A RL+++ +++ + + + L VH + +
Sbjct: 128 PTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDE 187
Query: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLALMMQLARELKT 236
VLQ + + + S +K+V++DSV +VV L G +E + + A LK
Sbjct: 188 VLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
Query: 237 LARDLGMAVVVTNHITRDRD------------------------SGRLKPALGRSWSFVP 272
LA + + V++TN IT S + ALG +WS
Sbjct: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
Query: 273 STRILLDTIEGAGASGGRRMACLAKSSRQP 302
+TR++L ++ RR +AKS P
Sbjct: 305 NTRLILQYLDSE-----RRQILIAKSPLAP 329
>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
Length = 350
Score = 99.4 bits (246), Expect = 4e-21
Identities = 88/330 (26%), Positives = 146/330 (44%), Gaps = 48/330 (14%)
Query: 11 GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFP----V 66
GL++E+ L H+I T D + E+ + GLSY+ + L + + + P
Sbjct: 10 GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRGVHEL--LCMVSRACAPKMQTA 67
Query: 67 NGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA- 125
G S A LST + +LD+ L G+ G +TEI G PG GKTQ C+ M+
Sbjct: 68 YGIKAQRSADFSPAFLSTTLSALDEALHGGVACGSLTEITGPPGCGKTQFCIMMSILATL 127
Query: 126 ----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEALRRIQVVHAFDIFQMLD 180
GL+ V+Y+D+ +A RL+++ +++ + + + L VH + +
Sbjct: 128 PTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLLLTSSKVHLYRELTCDE 187
Query: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQREGLALMMQLARELKT 236
VLQ + + + S +K+V++DSV +VV L G +E + + A LK
Sbjct: 188 VLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNLKERNKFLAREASSLKY 244
Query: 237 LARDLGMAVVVTNHITRDRD------------------------SGRLKPALGRSWSFVP 272
LA + + V++TN IT S + ALG +WS
Sbjct: 245 LAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSGSSCVIAALGNTWSHSV 304
Query: 273 STRILLDTIEGAGASGGRRMACLAKSSRQP 302
+TR++L ++ RR +AKS P
Sbjct: 305 NTRLILQYLDSE-----RRQILIAKSPLAP 329
>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
Length = 376
Score = 73.2 bits (178), Expect = 3e-13
Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 48/331 (14%)
Query: 20 LRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTST 79
L S +T +L+ E++++ G+S + +++ + A E K T
Sbjct: 27 LVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCT 86
Query: 80 AI-----------LSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA--- 125
A+ + T +LD +L G+ + TEI G PG GKTQ+C+ +A +V
Sbjct: 87 ALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPE 146
Query: 126 --HGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQ 183
G+ +++D+ G R++ L A Q + AE + + A + F + ++L
Sbjct: 147 CFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILS 206
Query: 184 ELRGTVAQQVT-------------GSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQL 230
+ + T V++V+VD + L L+ L
Sbjct: 207 HIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLR-TRLLNGL 265
Query: 231 ARELKTLARDLGMAVVVTNHITR--DRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASG 288
A+++ +LA + +AV++TN +T DR+ L PALG SW + R++
Sbjct: 266 AQQMISLANNHRLAVILTNQMTTKIDRNQALLVPALGESWGHAATIRLIFHW------DR 319
Query: 289 GRRMACLAKSSRQ----------PTGFQEMV 309
+R+A L KS Q P GF++ V
Sbjct: 320 KQRLATLYKSPSQKECTVLFQIKPQGFRDTV 350
>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
Length = 339
Score = 68.6 bits (166), Expect = 7e-12
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 24/221 (10%)
Query: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANV-----AH 126
+ + ++ ++TG LDKLL G+ TG +TE+ G +GKTQ+C +A
Sbjct: 92 FHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRG 151
Query: 127 GLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELR 186
G + +Y+D+ G RLL + + + ++ L + AF+ +L +
Sbjct: 152 GGEGKAMYIDTEGTFRPERLLAVAE---RYGLSGSDVLDNVAYARAFNTDHQTQLLYQAS 208
Query: 187 GTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLAR---DLGM 243
+ + +++VDS TA+ G + E A M LAR L+ L R + G+
Sbjct: 209 AMMVE------SRYALLIVDSATALYRTDYSG-RGELSARQMHLARFLRMLLRLADEFGV 261
Query: 244 AVVVTNHITRDRDSGRL------KPALGRSWSFVPSTRILL 278
AVV+TN + D + KP G + +TR+ L
Sbjct: 262 AVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYL 302
>gi|153946430 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 60.5 bits (145), Expect = 2e-09
Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 34/253 (13%)
Query: 73 EELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---G 127
E T LS G LD LL GL +TE+ G +GKTQ+ LC+A G
Sbjct: 73 ERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGG 132
Query: 128 LQQNVLYVDSNGGLTASRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLD 180
L+ +Y+ + RL QL+ + +T E + LR +I + H D+ +L+
Sbjct: 133 LEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLE 192
Query: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLAR 239
+ + V S G ++VV+DSV A Q A +Q L L+ L+
Sbjct: 193 CVNK-----KVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSS 247
Query: 240 DLGMAVVVTNHITRDRD------------SGRLKPALGRSWSFVPSTRILLDTIEGAGAS 287
V+ N +T + R+ PALG +W+ R+L D + A+
Sbjct: 248 AFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA 307
Query: 288 GGRRMACLAKSSR 300
+ C A++ R
Sbjct: 308 ----LGCPARTLR 316
>gi|153946427 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 60.5 bits (145), Expect = 2e-09
Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 34/253 (13%)
Query: 73 EELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---G 127
E T LS G LD LL GL +TE+ G +GKTQ+ LC+A G
Sbjct: 73 ERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGG 132
Query: 128 LQQNVLYVDSNGGLTASRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLD 180
L+ +Y+ + RL QL+ + +T E + LR +I + H D+ +L+
Sbjct: 133 LEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLE 192
Query: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLAR 239
+ + V S G ++VV+DSV A Q A +Q L L+ L+
Sbjct: 193 CVNK-----KVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSS 247
Query: 240 DLGMAVVVTNHITRDRD------------SGRLKPALGRSWSFVPSTRILLDTIEGAGAS 287
V+ N +T + R+ PALG +W+ R+L D + A+
Sbjct: 248 AFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA 307
Query: 288 GGRRMACLAKSSR 300
+ C A++ R
Sbjct: 308 ----LGCPARTLR 316
>gi|4885659 X-ray repair cross complementing protein 3 [Homo
sapiens]
Length = 346
Score = 60.5 bits (145), Expect = 2e-09
Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 34/253 (13%)
Query: 73 EELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---G 127
E T LS G LD LL GL +TE+ G +GKTQ+ LC+A G
Sbjct: 73 ERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGG 132
Query: 128 LQQNVLYVDSNGGLTASRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLD 180
L+ +Y+ + RL QL+ + +T E + LR +I + H D+ +L+
Sbjct: 133 LEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLE 192
Query: 181 VLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLAR 239
+ + V S G ++VV+DSV A Q A +Q L L+ L+
Sbjct: 193 CVNK-----KVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSS 247
Query: 240 DLGMAVVVTNHITRDRD------------SGRLKPALGRSWSFVPSTRILLDTIEGAGAS 287
V+ N +T + R+ PALG +W+ R+L D + A+
Sbjct: 248 AFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA 307
Query: 288 GGRRMACLAKSSR 300
+ C A++ R
Sbjct: 308 ----LGCPARTLR 316
>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
Length = 340
Score = 53.1 bits (126), Expect = 3e-07
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 20/220 (9%)
Query: 72 YEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV--CLCMAANV--AHG 127
Y E + ++TG DKLL G+ + +TE G +GKTQ+ LC+ A + A G
Sbjct: 91 YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG 150
Query: 128 LQ-QNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELR 186
++++D+ RL + D + L + A+ +++L
Sbjct: 151 YPGGKIIFIDTENTFRPDRLRDIADRFNVDHD---AVLDNVLYARAYTSEHQMELLD--- 204
Query: 187 GTVAQQVTGSSGTVKVVVVDSVTAV--VSPLLGGQQREGLALMMQLARELKTLARDLGMA 244
VA + +G K++++DS+ A+ V G+ E + Q+ L+ ++ + +A
Sbjct: 205 -YVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA 263
Query: 245 VVVTNHITRDR------DSGRLKPALGRSWSFVPSTRILL 278
V VTN +T D + KP G + +TRI L
Sbjct: 264 VFVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISL 303
>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
Length = 841
Score = 35.8 bits (81), Expect = 0.054
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 128 LQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRG 187
LQ V +D G RL + ++ Q ++EQ EAL++ + HA ++ + LQ++R
Sbjct: 511 LQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEEALKQCREQHAAELKGKEEELQDVRD 570
Query: 188 TVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQ---QREGLALMMQLAREL 234
+ Q +K + S+ V + GQ +++G A + L R+L
Sbjct: 571 QLEQAQEERDCHLK--TISSLKQEVKDTVDGQRILEKKGSAALKDLKRQL 618
>gi|38788372 aquarius [Homo sapiens]
Length = 1485
Score = 35.4 bits (80), Expect = 0.070
Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 55 RVLLAQFSAFPVNGADLYEELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKT 114
+ L+ + P G Y + K +T + + + + AG+ G +T +VG PG+GKT
Sbjct: 775 KTLIVEPHVIPNRGPYPYNQPKRNTIQFTH---TQIEAIRAGMQPG-LTMVVGPPGTGKT 830
Query: 115 QVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDE 157
V + + +N+ H + + ++ ++L + + A DE
Sbjct: 831 DVAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIMALDIDE 873
>gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
Length = 242
Score = 33.9 bits (76), Expect = 0.20
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 202 VVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITRDRDSG 258
+++VDS TA+ G+ E A M LAR L+ L R + G+AVV+TN + D
Sbjct: 121 LLIVDSATALYRTDYSGRG-ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGA 179
Query: 259 RL------KPALGRSWSFVPSTRILL 278
+ KP G + +TR+ L
Sbjct: 180 AMFAADPKKPIGGNIIAHASTTRLYL 205
>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
Length = 135
Score = 33.5 bits (75), Expect = 0.27
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 20 LRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNGADLYEELKTST 79
L S +T +L+ E++++ G+S + +++ + A E K T
Sbjct: 27 LVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYAGTSESHKKCT 86
Query: 80 AI-----------LSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQV 116
A+ + T +LD +L G+ + TEI G PG GKTQ+
Sbjct: 87 ALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQL 134
>gi|4885657 X-ray repair cross complementing protein 2 [Homo
sapiens]
Length = 280
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Query: 100 GEVTEIVGGPGSGKTQVCL-----CMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKT 154
G++ E G G+GKT++ C+ GL+ VL++D++ RL+ +L+ +
Sbjct: 41 GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100
Query: 155 QDEEEQ--AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTA 210
E+ L R +V+ +L L L + + S ++ ++++DS++A
Sbjct: 101 SQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSL-----ESMFCSHPSLCLLILDSLSA 153
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 31.2 bits (69), Expect = 1.3
Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 145 RLLQLLQAKTQDEEEQAEALRRIQVVHAFD--IFQMLDVLQELRGTVAQQVTGSSGTVKV 202
R++Q L A+TQ E++A+ L++ V+ AF+ + M + L ++G V + T ++ T ++
Sbjct: 1199 RVVQDLAARTQRLEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAASTAQL 1258
Query: 203 V 203
V
Sbjct: 1259 V 1259
>gi|154091028 sorting nexin 29 [Homo sapiens]
Length = 428
Score = 30.0 bits (66), Expect = 2.9
Identities = 45/174 (25%), Positives = 68/174 (39%), Gaps = 32/174 (18%)
Query: 64 FPVNGADLYEELKTSTAILSTGIGSLDKLL-DAGL-YTGEVTEIVGGPGSGKTQVCLCMA 121
FPV+G Y L G G D +L D GL Y+ E + PG G L +
Sbjct: 18 FPVSGVGSYSPADAPLGSLENGTGPEDHVLPDPGLRYSVEAS----SPGHGSPLSSLLPS 73
Query: 122 ANVAHGLQQNVLYVDSNGGLTASRLLQLLQA---KTQDEEEQAEALRRI---QVVHAFDI 175
A+V +T S L Q A + + EE+ +LR + ++ H+ +
Sbjct: 74 ASVPE-------------SMTISELRQATVAMMNRKDELEEENRSLRNLLDGEMEHSAAL 120
Query: 176 FQMLDVL-------QELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQRE 222
Q +D L +E +G Q + + +KV + V AV GQ E
Sbjct: 121 RQEVDTLKRKVAEQEERQGMKVQALARENEVLKVQLKKYVGAVQMLKREGQTAE 174
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 29.3 bits (64), Expect = 5.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 174 DIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVS 213
DIF+ L+ E++ +V Q GSSGT + V SV +S
Sbjct: 489 DIFENLETAMEVQSSVDHQGDGSSGTEQEVESSSVKLNIS 528
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 29.3 bits (64), Expect = 5.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 174 DIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVS 213
DIF+ L+ E++ +V Q GSSGT + V SV +S
Sbjct: 527 DIFENLETAMEVQSSVDHQGDGSSGTEQEVESSSVKLNIS 566
>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
Length = 3996
Score = 29.3 bits (64), Expect = 5.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 264 LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPT-------GFQEMVDIGT 313
L R+ ++P ++I G+S GR++A L + +RQ GF+E + IG+
Sbjct: 1692 LSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGS 1748
>gi|31377557 hypothetical protein LOC131583 [Homo sapiens]
Length = 423
Score = 29.3 bits (64), Expect = 5.0
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 152 AKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAV 211
A+ EE+AEA R + V F+ +LD L+ RG GS G A
Sbjct: 287 AEGDPAEEEAEAQRALVVAMHFECGDLLDTLENGRGEALGGGGGSLGP---------GAG 337
Query: 212 VSPLLGGQQREGLALMMQLARELKTLA 238
PLL G + A + QL +L L+
Sbjct: 338 PPPLLLGSASDMKAELSQLISDLGELS 364
>gi|198041928 FYVE, RhoGEF and PH domain containing 4 [Homo sapiens]
Length = 766
Score = 28.9 bits (63), Expect = 6.6
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 73 EELKTSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQ--Q 130
EE K +T T I + + LLD + GE E P S T C A++ ++
Sbjct: 103 EEEKAATLSSDTSIQASEPLLDTHIVNGERDETATAPASPTTDSCDGNASDSSYRTPGIG 162
Query: 131 NVLYVDSNGGLTASRLLQLLQAKTQDEEEQAE 162
VL ++ G T +++ + ++ E EQ +
Sbjct: 163 PVLPLEERGAETETKVQERENGESPLELEQLD 194
>gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase
precursor [Homo sapiens]
Length = 339
Score = 28.5 bits (62), Expect = 8.6
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 189 VAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDL----GMA 244
+A + ++ + K+ +V++ A++ P GG QR A+ M LA+EL AR L A
Sbjct: 192 LACDIRVAASSAKMGLVETKLAII-PGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKA 250
Query: 245 VVVTNHITRDRDSG--RLKPALGRSWSFVP 272
V + +H+ G + AL + F+P
Sbjct: 251 VGLISHVLEQNQEGDAAYRKALDLAREFLP 280
>gi|226491350 tubulin polymerization-promoting protein family member
2 [Homo sapiens]
Length = 170
Score = 28.5 bits (62), Expect = 8.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 77 TSTAILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGK 113
T+ A +T +G++D+L D YTG E G GK
Sbjct: 105 TTGATKATTVGAVDRLTDTSKYTGTHKERFDESGKGK 141
>gi|58331189 T-cell lymphoma invasion and metastasis 2 isoform b
[Homo sapiens]
Length = 626
Score = 28.5 bits (62), Expect = 8.6
Identities = 22/95 (23%), Positives = 37/95 (38%)
Query: 207 SVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGR 266
++ V+ +L R + + L + K L V V+ + R LK +
Sbjct: 370 NIVKVIRSILRENFRRHIKCELPLEKTCKDRLVPLKNRVPVSAKLASSRSLKVLKNSSSN 429
Query: 267 SWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQ 301
W+ LLD+ EG+ +SG + C RQ
Sbjct: 430 EWTGETGKGTLLDSDEGSLSSGTQSSGCPTAEGRQ 464
>gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a [Homo
sapiens]
Length = 1701
Score = 28.5 bits (62), Expect = 8.6
Identities = 22/95 (23%), Positives = 37/95 (38%)
Query: 207 SVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGR 266
++ V+ +L R + + L + K L V V+ + R LK +
Sbjct: 1445 NIVKVIRSILRENFRRHIKCELPLEKTCKDRLVPLKNRVPVSAKLASSRSLKVLKNSSSN 1504
Query: 267 SWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQ 301
W+ LLD+ EG+ +SG + C RQ
Sbjct: 1505 EWTGETGKGTLLDSDEGSLSSGTQSSGCPTAEGRQ 1539
>gi|24308257 vesicle amine transport protein 1 homolog (T.
californica)-like [Homo sapiens]
Length = 419
Score = 28.5 bits (62), Expect = 8.6
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 5 RVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQ 41
R GL G+ E++I L +IK VVD + A LEEV +
Sbjct: 327 RAGLIRGVVEKLIGLYNQKKIKPVVDSLWA-LEEVKE 362
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 28.5 bits (62), Expect = 8.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 81 ILSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAA 122
+ + G+ L L+ L GE +VG G GKT +C AA
Sbjct: 1364 VWTEGMRRLAMLVGRALEFGEPVLLVGDTGCGKTTICQVFAA 1405
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,753,137
Number of Sequences: 37866
Number of extensions: 431672
Number of successful extensions: 1375
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1328
Number of HSP's gapped (non-prelim): 38
length of query: 328
length of database: 18,247,518
effective HSP length: 103
effective length of query: 225
effective length of database: 14,347,320
effective search space: 3228147000
effective search space used: 3228147000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.