Guide to the Human Genome
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Name: C5orf4 Sequence: fasta or formatted (144aa) NCBI GI: 7705943
Description:

hypothetical protein LOC10826 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {333aa} hypothetical protein LOC10826 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         10           1
 C cysteine            5.6          8           1
 D aspartate           2.8          4           1
 E glutamate           2.1          3           1
 F phenylalanine       2.1          3           2
 G glycine             8.3         12           1
 H histidine           3.5          5           1
 I isoleucine          1.4          2           1
 K lysine              3.5          5           1
 L leucine             9.0         13           2
 M methionine          4.2          6           1
 N asparagine          2.8          4           2
 P proline             9.0         13           2
 Q glutamine           2.8          4           1
 R arginine            9.7         14           1
 S serine             14.6         21           2
 T threonine           6.2          9           2
 V valine              2.1          3           1
 W tryptophan          3.5          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC10826 isoform 1 
LOC100291743          0.038   PREDICTED: hypothetical protein XP_002344931 
LOC100289969          0.038   PREDICTED: hypothetical protein XP_002347692 
LOC100288859          0.038   PREDICTED: hypothetical protein XP_002343508 
LRCH3                 0.038   leucine-rich repeats and calponin homology (CH) doma...
PAX8                  0.021   paired box 8 isoform PAX8C 
AARSD1                0.021   alanyl-tRNA synthetase domain containing 1 isoform ...
AARSD1                0.021   alanyl-tRNA synthetase domain containing 1 isoform ...
EPHB6                 0.017   ephrin receptor EphB6 precursor 
CR1                   0.017   complement receptor 1 isoform S precursor 
CR1                   0.017   complement receptor 1 isoform F precursor 
PRR12                 0.017   proline rich 12 
TBC1D3H               0.014   TBC1 domain family, member 3H 
TBC1D3F               0.014   TBC1 domain family, member 3F 
TBC1D3                0.014   TBC1 domain family, member 3 
TBC1D3E               0.014   TBC1 domain family, member 3E 
TBC1D3D               0.014   TBC1 domain family, member 3D 
TBC1D3C               0.014   TBC1 domain family member 3C 
TBC1D3G               0.014   TBC1 domain family, member 3G 
MLLT4                 0.014   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.014   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT4                 0.014   myeloid/lymphoid or mixed-lineage leukemia (trithora...
TBC1D3B               0.014   TBC1 domain family, member 3B 
DFNB31                0.014   CASK-interacting protein CIP98 isoform 2 
DFNB31                0.014   CASK-interacting protein CIP98 isoform 1 
LOC100289737          0.010   PREDICTED: hypothetical protein XP_002347183 
LOC100288678          0.010   PREDICTED: hypothetical protein XP_002343039 
SHANK3                0.010   SH3 and multiple ankyrin repeat domains 3 
AARSD1                0.010   alanyl-tRNA synthetase domain containing 1 isoform ...
LOC100292348          0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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