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Search of human proteins with 21735598
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens]
(458 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens] 914 0.0
gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens] 905 0.0
gi|110630018 eukaryotic translation initiation factor 4 gamma, 2... 49 7e-06
gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i... 49 7e-06
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 42 9e-04
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 42 9e-04
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 42 9e-04
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 42 9e-04
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 42 9e-04
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 40 0.003
gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo... 37 0.037
gi|39995084 integrator complex subunit 3 [Homo sapiens] 34 0.24
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 34 0.32
gi|8923712 uncharacterized hypothalamus protein HARP11 [Homo sap... 34 0.32
gi|33286446 opioid growth factor receptor [Homo sapiens] 33 0.41
gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD p... 33 0.54
gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 33 0.54
gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 33 0.54
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 33 0.70
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 33 0.70
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 33 0.70
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.70
gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatas... 32 0.92
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ... 32 1.2
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 32 1.2
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 32 1.6
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 32 1.6
gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo ... 32 1.6
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 32 1.6
gi|23510451 N-acylaminoacyl-peptide hydrolase [Homo sapiens] 31 2.0
>gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens]
Length = 458
Score = 914 bits (2361), Expect = 0.0
Identities = 458/458 (100%), Positives = 458/458 (100%)
Query: 1 MTKYPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDS 60
MTKYPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDS
Sbjct: 1 MTKYPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDS 60
Query: 61 GRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVY 120
GRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVY
Sbjct: 61 GRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVY 120
Query: 121 DVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDL 180
DVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDL
Sbjct: 121 DVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDL 180
Query: 181 NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELA 240
NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELA
Sbjct: 181 NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELA 240
Query: 241 LDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRK 300
LDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRK
Sbjct: 241 LDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRK 300
Query: 301 DSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMV 360
DSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMV
Sbjct: 301 DSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMV 360
Query: 361 LESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 420
LESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE
Sbjct: 361 LESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVE 420
Query: 421 ECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 458
ECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY
Sbjct: 421 ECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 458
>gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens]
Length = 469
Score = 905 bits (2339), Expect = 0.0
Identities = 454/454 (100%), Positives = 454/454 (100%)
Query: 5 PDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGD 64
PDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGD
Sbjct: 16 PDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGD 75
Query: 65 SVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEE 124
SVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEE
Sbjct: 76 SVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEE 135
Query: 125 VDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE 184
VDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE
Sbjct: 136 VDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE 195
Query: 185 MKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTP 244
MKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTP
Sbjct: 196 MKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTP 255
Query: 245 RAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVW 304
RAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVW
Sbjct: 256 RAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVW 315
Query: 305 GSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLEST 364
GSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLEST
Sbjct: 316 GSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLEST 375
Query: 365 GESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQ 424
GESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQ
Sbjct: 376 GESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQ 435
Query: 425 AGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 458
AGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY
Sbjct: 436 AGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 469
>gi|110630018 eukaryotic translation initiation factor 4 gamma, 2
isoform 2 [Homo sapiens]
Length = 869
Score = 49.3 bits (116), Expect = 7e-06
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 312 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFK 370
S L+K + ++ EYL SG+ +EA + ++E+ P HF E++ + II+ L+ + E K
Sbjct: 502 SKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 561
Query: 371 MILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 429
L+ L + T D + + + ++ P + +D+P S L +F + ++S
Sbjct: 562 -ASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVS 619
Score = 43.1 bits (100), Expect = 5e-04
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 147 PLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN-----LGEMKSGVPVLAVSLALEGK 201
P E + T T ++ EY G+ NE +R++ L EM S V +L++ + E K
Sbjct: 501 PSKEELLKLTET-VVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDK 559
Query: 202 ASHREMTSKLLSDLCGTVMSTTD-VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAV 258
E S L+S L ++T+D ++F +L P+L +D P + QF ARA+
Sbjct: 560 ----EKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAI 613
>gi|4503539 eukaryotic translation initiation factor 4 gamma, 2
isoform 1 [Homo sapiens]
Length = 907
Score = 49.3 bits (116), Expect = 7e-06
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 312 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFK 370
S L+K + ++ EYL SG+ +EA + ++E+ P HF E++ + II+ L+ + E K
Sbjct: 540 SKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 599
Query: 371 MILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 429
L+ L + T D + + + ++ P + +D+P S L +F + ++S
Sbjct: 600 -ASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVS 657
Score = 43.1 bits (100), Expect = 5e-04
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 147 PLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN-----LGEMKSGVPVLAVSLALEGK 201
P E + T T ++ EY G+ NE +R++ L EM S V +L++ + E K
Sbjct: 539 PSKEELLKLTET-VVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDK 597
Query: 202 ASHREMTSKLLSDLCGTVMSTTD-VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAV 258
E S L+S L ++T+D ++F +L P+L +D P + QF ARA+
Sbjct: 598 ----EKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAI 651
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 42.4 bits (98), Expect = 9e-04
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 312 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 371
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1238 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1297
Query: 372 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 426
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1298 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1351
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 42.4 bits (98), Expect = 9e-04
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 312 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 371
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1151 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1210
Query: 372 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 426
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1211 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1264
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 42.4 bits (98), Expect = 9e-04
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 312 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 371
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1074 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1133
Query: 372 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 426
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1134 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1187
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 42.4 bits (98), Expect = 9e-04
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 312 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 371
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1238 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1297
Query: 372 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 426
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1298 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1351
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 42.4 bits (98), Expect = 9e-04
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 312 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 371
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1042 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1101
Query: 372 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 426
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1102 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1155
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 [Homo
sapiens]
Length = 1585
Score = 40.4 bits (93), Expect = 0.003
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 312 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 371
S L ++ ++ E+L D EA C++EL H V + LE + + T
Sbjct: 1218 SEEELERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERS-QITRDH 1276
Query: 372 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 429
+ LL L +S ++ +G+ D+ +D+PH + L V + G IS
Sbjct: 1277 MGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGIS 1334
>gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo
sapiens]
Length = 194
Score = 37.0 bits (84), Expect = 0.037
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 175 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 234
+++ DLN E ++ PV V++ ++ + + L+ +LC + T D+E D+LL+
Sbjct: 118 QVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQ 177
Query: 235 DLPE 238
+ E
Sbjct: 178 EFEE 181
>gi|39995084 integrator complex subunit 3 [Homo sapiens]
Length = 1042
Score = 34.3 bits (77), Expect = 0.24
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 320 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAII--MVLESTGE----------- 366
+D +L+E S +S CL+EL HF E++ E I + ES G+
Sbjct: 602 VDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQ 661
Query: 367 -----STFKMILDLLKSLWKSSTITVDQMKRGYERIY 398
S+F ++LDLL L++ Q K GY +Y
Sbjct: 662 MQEDNSSFSLLLDLLSELYQK------QPKIGYHLLY 692
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 33.9 bits (76), Expect = 0.32
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 19/136 (13%)
Query: 9 SDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRG----- 63
SD F+GD A + E+ +I+ WI +S + A L +S SG G
Sbjct: 247 SDLAFNGDLAKAASSELPADISKPWIPSSPAPSSENGGPASPGLPAEAS-GSGPGSPHLH 305
Query: 64 -------------DSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGK 110
++ + S A P++P L D SR GLP +G
Sbjct: 306 PPDKSSPCHSQLLEAQTPEASQASPCPAVTPSAPSAALPDEGSRHTPSPGLPAEGAPEAP 365
Query: 111 GVWGTPGQVYDVEEVD 126
P +V + +D
Sbjct: 366 RPSSPPPEVLEPHSLD 381
>gi|8923712 uncharacterized hypothalamus protein HARP11 [Homo
sapiens]
Length = 417
Score = 33.9 bits (76), Expect = 0.32
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 25/132 (18%)
Query: 135 DQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEV-AEMLRDLNLG---------- 183
D+ + E+V+ P F +TLT ++ +YFE + ++ L LG
Sbjct: 86 DRRVVIIESVLCPSH---FRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCG 142
Query: 184 -------EMKSGVPVLAV--SLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 234
+ G+PVL +L L GKA H+E+ ++LL TV ++ E+S ++
Sbjct: 143 YRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQC--TVDTSVAKEQSLPSVMG 200
Query: 235 DLPELALDTPRA 246
+PE L+ +A
Sbjct: 201 SVPEGVLEDIKA 212
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 33.5 bits (75), Expect = 0.41
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 7 NLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGDSV 66
NL S GT+E+ + G + + A+ ++RK D G GDS
Sbjct: 413 NLEGCALSQGSLRTGTQEVGGQDPGEAVQPC---RQPLGARVADKVRKRRKVDEGAGDSA 469
Query: 67 SDSGSDALRSGLTVPTSPKGRLLDRRSRSG-----KGRGLPKKGGAGGKGVWGTPG 117
+ + A L +P G S +G +GR PK+G G TPG
Sbjct: 470 AVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPS--ETPG 523
>gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.54
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 175 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 234
+++ DLN E ++ PV V++ ++ + + L+ +LC + + D+E D+LL+
Sbjct: 118 QVVEDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQ 177
Query: 235 DL 236
L
Sbjct: 178 KL 179
>gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.54
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 175 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 234
+++ DLN E ++ PV V++ ++ + + L+ +LC + + D+E D+LL+
Sbjct: 118 QVVEDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQ 177
Query: 235 DL 236
L
Sbjct: 178 KL 179
>gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.54
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 175 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 234
+++ DLN E ++ PV V++ ++ + + L+ +LC + + D+E D+LL+
Sbjct: 118 QVVEDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQ 177
Query: 235 DL 236
L
Sbjct: 178 KL 179
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 32.7 bits (73), Expect = 0.70
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 75 RSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKD 129
R G+ P PKG DR SR KG P K G G G+ G PG V V +D
Sbjct: 1085 REGIAGPQGPKG---DRGSRGEKGD--PGKDGVGQPGLPGPPGPPGPVVYVSEQD 1134
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 32.7 bits (73), Expect = 0.70
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 75 RSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKD 129
R G+ P PKG DR SR KG P K G G G+ G PG V V +D
Sbjct: 670 REGIAGPQGPKG---DRGSRGEKGD--PGKDGVGQPGLPGPPGPPGPVVYVSEQD 719
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 32.7 bits (73), Expect = 0.70
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 75 RSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKD 129
R G+ P PKG DR SR KG P K G G G+ G PG V V +D
Sbjct: 850 REGIAGPQGPKG---DRGSRGEKGD--PGKDGVGQPGLPGPPGPPGPVVYVSEQD 899
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.70
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 50 RRLRKNSS---RDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSG---KGRGLPK 103
RR R SS +D R + SGSD+ P +P R L RRSRSG KGRG
Sbjct: 1594 RRSRSGSSPEVKDKPRAAPRAQSGSDSSPE----PKAPAPRALPRRSRSGSSSKGRGPSP 1649
Query: 104 KGGA 107
+G +
Sbjct: 1650 EGSS 1653
>gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatase,
A [Homo sapiens]
Length = 638
Score = 32.3 bits (72), Expect = 0.92
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 11 SLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSG--RGDSVSD 68
SL S + ++ T+ G S + + + + + +++ SR G R ++
Sbjct: 472 SLPSSELASSSTDSSGTSSEGEDDSTLELLAPKSRSPSPGKSKRHRSRSPGLARFPGLAL 531
Query: 69 SGSDALRSGLTVPTSPKGRLLDR----RSRSGKGRGLPKKGGAGGKGVWGTPGQV 119
S R G + SP+ R L R RS +G RG ++G +G G W P V
Sbjct: 532 RPSSRERRGASRSPSPQSRRLSRVAPDRSSNGSSRGSSEEGPSGLPGPWAFPPAV 586
>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
sapiens]
Length = 196
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 55 NSSRDS--GRGDSVSDSGSDALRSGLTV---------PTSPKGRLLDRRSRSGKGRGLPK 103
+SSRD G DS S S SD SG P+ +G R S S RG P+
Sbjct: 119 SSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPR 178
Query: 104 KGGAGG 109
GG GG
Sbjct: 179 GGGRGG 184
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 55 NSSRDS--GRGDSVSDSGSDALRSGLT---------VPTSPKGRLLDRRSRSGKGRGLPK 103
+SSRD G DS S S SD SG P+ +G R S S RG P+
Sbjct: 314 SSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPR 373
Query: 104 KGGAGG 109
GG GG
Sbjct: 374 GGGRGG 379
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 231 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVL 290
+LL L + + PR PQ G F + + C ++ + + R+ K+T+L
Sbjct: 262 QLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEEL---AELLPKRSLDPKSTLL 318
Query: 291 LSMSKGGKRKD 301
LS+S GG D
Sbjct: 319 LSLSSGGSSAD 329
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 231 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVL 290
+LL L + + PR PQ G F + + C ++ + + R+ K+T+L
Sbjct: 262 QLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEEL---AELLPKRSLDPKSTLL 318
Query: 291 LSMSKGGKRKD 301
LS+S GG D
Sbjct: 319 LSLSSGGSSAD 329
>gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo
sapiens]
Length = 500
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 231 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVL 290
+LL L + + PR PQ G F + + C ++ + + R+ K+T+L
Sbjct: 262 QLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEEL---AELLPKRSLDPKSTLL 318
Query: 291 LSMSKGGKRKD 301
LS+S GG D
Sbjct: 319 LSLSSGGSSAD 329
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 231 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVL 290
+LL L + + PR PQ G F + + C ++ + + R+ K+T+L
Sbjct: 262 QLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEEL---AELLPKRSLDPKSTLL 318
Query: 291 LSMSKGGKRKD 301
LS+S GG D
Sbjct: 319 LSLSSGGSSAD 329
>gi|23510451 N-acylaminoacyl-peptide hydrolase [Homo sapiens]
Length = 732
Score = 31.2 bits (69), Expect = 2.0
Identities = 46/189 (24%), Positives = 78/189 (41%), Gaps = 32/189 (16%)
Query: 63 GDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKG-------VWGT 115
GDSV +G +G +V T +G LL R S SG + + +K G G G VW
Sbjct: 73 GDSVVFAGP----AGNSVET--RGELLSRESPSGTMKAVLRKAGGTGPGEEKQFLEVWEK 126
Query: 116 PGQV--YDVEEVDVKDPNYDDDQENCV----YETVVLPLDERAFEKTLTPIIQEYFEHGD 169
++ +++ ++ P Y+DD C+ ET +L + E+ P + +F+
Sbjct: 127 NRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKK-----RPKAESFFQ--- 178
Query: 170 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF 229
T + D + +K + + + M SK + LC DVE
Sbjct: 179 TKALDVSASDDEIARLKKPDQAIKGDQFVFYEDWGENMVSKSIPVLC-----VLDVESGN 233
Query: 230 DKLLKDLPE 238
+L+ +PE
Sbjct: 234 ISVLEGVPE 242
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,332,983
Number of Sequences: 37866
Number of extensions: 796799
Number of successful extensions: 2521
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2475
Number of HSP's gapped (non-prelim): 82
length of query: 458
length of database: 18,247,518
effective HSP length: 106
effective length of query: 352
effective length of database: 14,233,722
effective search space: 5010270144
effective search space used: 5010270144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.