Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC286528 Sequence: fasta or formatted (194aa) NCBI GI: 27486601
Description:

PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase homolog

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt mRNA [194aa] PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase hom...
alt mRNA [194aa] PREDICTED: similar to Ssu72 RNA polymerase II CTD phosphatase hom...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          6           1
 C cysteine            4.1          8           1
 D aspartate           7.7         15           1
 E glutamate           8.2         16           2
 F phenylalanine       4.6          9           1
 G glycine             3.1          6           1
 H histidine           2.1          4           1
 I isoleucine          6.7         13           2
 K lysine              5.7         11           2
 L leucine             8.2         16           2
 M methionine          3.1          6           1
 N asparagine          6.7         13           2
 P proline             4.1          8           1
 Q glutamine           7.2         14           1
 R arginine            5.7         11           1
 S serine              4.1          8           1
 T threonine           4.1          8           2
 V valine              7.2         14           2
 W tryptophan          0.5          1           1
 Y tyrosine            3.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 
LOC286528             1.000   PREDICTED: similar to Ssu72 RNA polymerase II CTD p...
LOC286528             1.000   PREDICTED: similar to Ssu72 RNA polymerase II CTD ph...
SSU72                 0.812   Ssu72 RNA polymerase II CTD phosphatase homolog [Homo...
LOC136157             0.643   hypothetical protein LOC136157 
PDCD4                 0.021   programmed cell death 4 isoform 2 
PDCD4                 0.021   programmed cell death 4 isoform 1 
ARFRP1                0.011   ADP-ribosylation factor related protein 1 isoform b...
ARFRP1                0.011   ADP-ribosylation factor related protein 1 isoform a [...
KCNK5                 0.011   potassium channel, subfamily K, member 5 
LOC100288239          0.008   PREDICTED: hypothetical protein XP_002343261 
ITIH5                 0.008   inter-alpha trypsin inhibitor heavy chain precursor...
ITIH5                 0.008   inter-alpha trypsin inhibitor heavy chain precursor...
CENPF                 0.005   centromere protein F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press