SSU72 35835

Name: SSU72	Sequence: fasta or formatted (194aa)		NCBI GI: 7661832
Description: Ssu72 RNA polymerase II CTD phosphatase homolog		Referenced in: RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.6 5 1 C cysteine 4.1 8 1 D aspartate 7.2 14 1 E glutamate 9.3 18 2 F phenylalanine 4.6 9 1 G glycine 3.6 7 1 H histidine 3.6 7 1 I isoleucine 4.1 8 1 K lysine 5.2 10 1 L leucine 9.3 18 2 M methionine 2.6 5 1 N asparagine 6.2 12 1 P proline 4.6 9 1 Q glutamine 5.7 11 1 R arginine 6.2 12 1 S serine 5.2 10 2 T threonine 5.7 11 2 V valine 7.2 14 2 W tryptophan 0.0 0 0 Y tyrosine 3.1 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo... LOC286528 0.808 PREDICTED: similar to Ssu72 RNA polymerase II CTD p... LOC286528 0.808 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... LOC286528 0.808 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... LOC136157 0.695 hypothetical protein LOC136157 PDCD4 0.032 programmed cell death 4 isoform 2 PDCD4 0.032 programmed cell death 4 isoform 1 MYH10 0.016 myosin, heavy polypeptide 10, non-muscle LOC652797 0.013 PREDICTED: similar to pyruvate kinase, muscle [Homo... TRPM3 0.013 transient receptor potential cation channel, subfam... TRPM3 0.013 transient receptor potential cation channel, subfam... TRPM3 0.013 transient receptor potential cation channel, subfam... TRPM3 0.013 transient receptor potential cation channel, subfam... TRPM3 0.013 transient receptor potential cation channel, subfam... TRPM3 0.013 transient receptor potential cation channel, subfam... TRPM3 0.013 transient receptor potential cation channel, subfam... ACACB 0.011 acetyl-Coenzyme A carboxylase beta HISPPD2A 0.008 histidine acid phosphatase domain containing 2A iso... HISPPD2A 0.008 histidine acid phosphatase domain containing 2A iso... HISPPD2A 0.008 histidine acid phosphatase domain containing 2A isof... HISPPD2A 0.008 histidine acid phosphatase domain containing 2A isof... DEF8 0.008 differentially expressed in FDCP 8 isoform 1 DEF8 0.008 differentially expressed in FDCP 8 isoform 2 TET1 0.008 CXXC finger 6 PLK4 0.008 polo-like kinase 4 LOC440243 0.008 PREDICTED: Putative golgin subfamily A member 6-lik... PRPF8 0.008 U5 snRNP-specific protein SMC5 0.008 SMC5 protein DDX5 0.005 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 POSTN 0.005 periostin, osteoblast specific factor isoform 4 [Ho... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.