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Search of human proteins with 21735596
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens]
(469 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens] 935 0.0
gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens] 905 0.0
gi|110630018 eukaryotic translation initiation factor 4 gamma, 2... 49 7e-06
gi|4503539 eukaryotic translation initiation factor 4 gamma, 2 i... 49 7e-06
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 42 0.001
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 42 0.001
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 42 0.001
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 42 0.001
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 42 0.001
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 40 0.003
gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo... 37 0.039
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.050
gi|39995084 integrator complex subunit 3 [Homo sapiens] 34 0.25
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 34 0.33
gi|8923712 uncharacterized hypothalamus protein HARP11 [Homo sap... 34 0.33
gi|33286446 opioid growth factor receptor [Homo sapiens] 33 0.43
gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD p... 33 0.56
gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 33 0.56
gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD ph... 33 0.56
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 33 0.73
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 33 0.73
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 33 0.73
gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatas... 32 0.95
gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo ... 32 1.2
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 32 1.2
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 32 1.6
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 32 1.6
gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo ... 32 1.6
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 32 1.6
gi|66346681 SERPINE1 mRNA binding protein 1 isoform 2 [Homo sapi... 32 1.6
>gi|21735596 programmed cell death 4 isoform 1 [Homo sapiens]
Length = 469
Score = 935 bits (2416), Expect = 0.0
Identities = 469/469 (100%), Positives = 469/469 (100%)
Query: 1 MDVENEQILNVNPADPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAK 60
MDVENEQILNVNPADPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAK
Sbjct: 1 MDVENEQILNVNPADPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAK 60
Query: 61 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG 120
RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG
Sbjct: 61 RRLRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGG 120
Query: 121 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD 180
KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD
Sbjct: 121 KGVWGTPGQVYDVEEVDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGD 180
Query: 181 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF 240
TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF
Sbjct: 181 TNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSF 240
Query: 241 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV 300
DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV
Sbjct: 241 DKLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATV 300
Query: 301 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH 360
LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH
Sbjct: 301 LLSMSKGGKRKDSVWGSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH 360
Query: 361 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP 420
HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP
Sbjct: 361 HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVP 420
Query: 421 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 469
HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY
Sbjct: 421 HSYSVLERFVEECFQAGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 469
>gi|21735598 programmed cell death 4 isoform 2 [Homo sapiens]
Length = 458
Score = 905 bits (2339), Expect = 0.0
Identities = 454/454 (100%), Positives = 454/454 (100%)
Query: 16 PDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGD 75
PDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGD
Sbjct: 5 PDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGD 64
Query: 76 SVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEE 135
SVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEE
Sbjct: 65 SVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEE 124
Query: 136 VDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE 195
VDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE
Sbjct: 125 VDVKDPNYDDDQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLNLGE 184
Query: 196 MKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTP 255
MKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTP
Sbjct: 185 MKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTP 244
Query: 256 RAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVW 315
RAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVW
Sbjct: 245 RAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVW 304
Query: 316 GSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLEST 375
GSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLEST
Sbjct: 305 GSGGGQQSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLEST 364
Query: 376 GESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQ 435
GESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQ
Sbjct: 365 GESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQ 424
Query: 436 AGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 469
AGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY
Sbjct: 425 AGIISKQLRDLCPSRGRKRFVSEGDGGRLKPESY 458
>gi|110630018 eukaryotic translation initiation factor 4 gamma, 2
isoform 2 [Homo sapiens]
Length = 869
Score = 49.3 bits (116), Expect = 7e-06
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 323 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFK 381
S L+K + ++ EYL SG+ +EA + ++E+ P HF E++ + II+ L+ + E K
Sbjct: 502 SKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 561
Query: 382 MILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 440
L+ L + T D + + + ++ P + +D+P S L +F + ++S
Sbjct: 562 -ASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVS 619
Score = 43.1 bits (100), Expect = 5e-04
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 158 PLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN-----LGEMKSGVPVLAVSLALEGK 212
P E + T T ++ EY G+ NE +R++ L EM S V +L++ + E K
Sbjct: 501 PSKEELLKLTET-VVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDK 559
Query: 213 ASHREMTSKLLSDLCGTVMSTTD-VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAV 269
E S L+S L ++T+D ++F +L P+L +D P + QF ARA+
Sbjct: 560 ----EKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAI 613
>gi|4503539 eukaryotic translation initiation factor 4 gamma, 2
isoform 1 [Homo sapiens]
Length = 907
Score = 49.3 bits (116), Expect = 7e-06
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 323 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFK 381
S L+K + ++ EYL SG+ +EA + ++E+ P HF E++ + II+ L+ + E K
Sbjct: 540 SKEELLKLTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEK 599
Query: 382 MILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 440
L+ L + T D + + + ++ P + +D+P S L +F + ++S
Sbjct: 600 -ASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAIISELVS 657
Score = 43.1 bits (100), Expect = 5e-04
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 11/118 (9%)
Query: 158 PLDERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN-----LGEMKSGVPVLAVSLALEGK 212
P E + T T ++ EY G+ NE +R++ L EM S V +L++ + E K
Sbjct: 539 PSKEELLKLTET-VVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDK 597
Query: 213 ASHREMTSKLLSDLCGTVMSTTD-VEKSFDKLLKDLPELALDTPRAPQLVGQFIARAV 269
E S L+S L ++T+D ++F +L P+L +D P + QF ARA+
Sbjct: 598 ----EKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVDIPLVKSYLAQFAARAI 651
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 323 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 382
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1238 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1297
Query: 383 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 437
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1298 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1351
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 323 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 382
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1151 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1210
Query: 383 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 437
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1211 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1264
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 323 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 382
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1074 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1133
Query: 383 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 437
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1134 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1187
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 323 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 382
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1238 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1297
Query: 383 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 437
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1298 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1351
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 323 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 382
S L K+ +++EYL D+ EA C++EL P V + LE + + M
Sbjct: 1042 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHM 1101
Query: 383 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAG 437
LL L + ++ Q +G I D+ +D+PH + L V Q G
Sbjct: 1102 -GQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEG 1155
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 [Homo
sapiens]
Length = 1585
Score = 40.4 bits (93), Expect = 0.003
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 323 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKM 382
S L ++ ++ E+L D EA C++EL H V + LE + + T
Sbjct: 1218 SEEELERKSKSIIDEFLHINDFKEAMQCVEELNAQGLLHVFVRVGVESTLERS-QITRDH 1276
Query: 383 ILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIIS 440
+ LL L +S ++ +G+ D+ +D+PH + L V + G IS
Sbjct: 1277 MGQLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGIS 1334
>gi|7661832 Ssu72 RNA polymerase II CTD phosphatase homolog [Homo
sapiens]
Length = 194
Score = 37.0 bits (84), Expect = 0.039
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 186 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 245
+++ DLN E ++ PV V++ ++ + + L+ +LC + T D+E D+LL+
Sbjct: 118 QVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQ 177
Query: 246 DLPE 249
+ E
Sbjct: 178 EFEE 181
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.6 bits (83), Expect = 0.050
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 5 NEQILNVNP-ADPDNLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRL 63
+ Q L+V P A P S+S S D + A T + + + S +++R++ + R
Sbjct: 1541 SSQELDVKPSASPQERSESDSSPDSK-AKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSG 1599
Query: 64 RKNSSRDSGRGDSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSG---KGRGLPKKGGA 118
+D R + SGSD+ P +P R L RRSRSG KGRG +G +
Sbjct: 1600 SSPEVKDKPRAAPRAQSGSDSSPE----PKAPAPRALPRRSRSGSSSKGRGPSPEGSS 1653
>gi|39995084 integrator complex subunit 3 [Homo sapiens]
Length = 1042
Score = 34.3 bits (77), Expect = 0.25
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 331 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAII--MVLESTGE----------- 377
+D +L+E S +S CL+EL HF E++ E I + ES G+
Sbjct: 602 VDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQ 661
Query: 378 -----STFKMILDLLKSLWKSSTITVDQMKRGYERIY 409
S+F ++LDLL L++ Q K GY +Y
Sbjct: 662 MQEDNSSFSLLLDLLSELYQK------QPKIGYHLLY 692
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 33.9 bits (76), Expect = 0.33
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 19/136 (13%)
Query: 20 SDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRG----- 74
SD F+GD A + E+ +I+ WI +S + A L +S SG G
Sbjct: 247 SDLAFNGDLAKAASSELPADISKPWIPSSPAPSSENGGPASPGLPAEAS-GSGPGSPHLH 305
Query: 75 -------------DSVSDSGSDALRSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGK 121
++ + S A P++P L D SR GLP +G
Sbjct: 306 PPDKSSPCHSQLLEAQTPEASQASPCPAVTPSAPSAALPDEGSRHTPSPGLPAEGAPEAP 365
Query: 122 GVWGTPGQVYDVEEVD 137
P +V + +D
Sbjct: 366 RPSSPPPEVLEPHSLD 381
>gi|8923712 uncharacterized hypothalamus protein HARP11 [Homo
sapiens]
Length = 417
Score = 33.9 bits (76), Expect = 0.33
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 25/132 (18%)
Query: 146 DQENCVYETVVLPLDERAFEKTLTPIIQEYFEHGDTNEV-AEMLRDLNLG---------- 194
D+ + E+V+ P F +TLT ++ +YFE + ++ L LG
Sbjct: 86 DRRVVIIESVLCPSH---FRETLTRVLFKYFEVPSVLLAPSHLMALLTLGINSAMVLDCG 142
Query: 195 -------EMKSGVPVLAV--SLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 245
+ G+PVL +L L GKA H+E+ ++LL TV ++ E+S ++
Sbjct: 143 YRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQC--TVDTSVAKEQSLPSVMG 200
Query: 246 DLPELALDTPRA 257
+PE L+ +A
Sbjct: 201 SVPEGVLEDIKA 212
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 33.5 bits (75), Expect = 0.43
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 18 NLSDSLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSGRGDSV 77
NL S GT+E+ + G + + A+ ++RK D G GDS
Sbjct: 413 NLEGCALSQGSLRTGTQEVGGQDPGEAVQPC---RQPLGARVADKVRKRRKVDEGAGDSA 469
Query: 78 SDSGSDALRSGLTVPTSPKGRLLDRRSRSG-----KGRGLPKKGGAGGKGVWGTPG 128
+ + A L +P G S +G +GR PK+G G TPG
Sbjct: 470 AVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGTPGSPS--ETPG 523
>gi|169217206 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.56
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 186 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 245
+++ DLN E ++ PV V++ ++ + + L+ +LC + + D+E D+LL+
Sbjct: 118 QVVEDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQ 177
Query: 246 DL 247
L
Sbjct: 178 KL 179
>gi|89060983 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.56
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 186 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 245
+++ DLN E ++ PV V++ ++ + + L+ +LC + + D+E D+LL+
Sbjct: 118 QVVEDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQ 177
Query: 246 DL 247
L
Sbjct: 178 KL 179
>gi|27486601 PREDICTED: similar to Ssu72 RNA polymerase II CTD
phosphatase homolog [Homo sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.56
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 186 EMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLK 245
+++ DLN E ++ PV V++ ++ + + L+ +LC + + D+E D+LL+
Sbjct: 118 QVVEDLNSREQETCRPVHVVNMDIQDNQEDAIIGAFLICELCQCIQRSEDMENEIDQLLQ 177
Query: 246 DL 247
L
Sbjct: 178 KL 179
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 32.7 bits (73), Expect = 0.73
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 86 RSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKD 140
R G+ P PKG DR SR KG P K G G G+ G PG V V +D
Sbjct: 1085 REGIAGPQGPKG---DRGSRGEKGD--PGKDGVGQPGLPGPPGPPGPVVYVSEQD 1134
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 32.7 bits (73), Expect = 0.73
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 86 RSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKD 140
R G+ P PKG DR SR KG P K G G G+ G PG V V +D
Sbjct: 670 REGIAGPQGPKG---DRGSRGEKGD--PGKDGVGQPGLPGPPGPPGPVVYVSEQD 719
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 32.7 bits (73), Expect = 0.73
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 86 RSGLTVPTSPKGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKD 140
R G+ P PKG DR SR KG P K G G G+ G PG V V +D
Sbjct: 850 REGIAGPQGPKG---DRGSRGEKGD--PGKDGVGQPGLPGPPGPPGPVVYVSEQD 899
>gi|50726960 phosphatidylinositol (4,5) bisphosphate 5-phosphatase,
A [Homo sapiens]
Length = 638
Score = 32.3 bits (72), Expect = 0.95
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 22 SLFSGDEENAGTEEIKNEINGNWISASSINEARINAKAKRRLRKNSSRDSG--RGDSVSD 79
SL S + ++ T+ G S + + + + + +++ SR G R ++
Sbjct: 472 SLPSSELASSSTDSSGTSSEGEDDSTLELLAPKSRSPSPGKSKRHRSRSPGLARFPGLAL 531
Query: 80 SGSDALRSGLTVPTSPKGRLLDR----RSRSGKGRGLPKKGGAGGKGVWGTPGQV 130
S R G + SP+ R L R RS +G RG ++G +G G W P V
Sbjct: 532 RPSSRERRGASRSPSPQSRRLSRVAPDRSSNGSSRGSSEEGPSGLPGPWAFPPAV 586
>gi|239757825 PREDICTED: hypothetical protein XP_002346350 [Homo
sapiens]
Length = 196
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 66 NSSRDS--GRGDSVSDSGSDALRSGLTV---------PTSPKGRLLDRRSRSGKGRGLPK 114
+SSRD G DS S S SD SG P+ +G R S S RG P+
Sbjct: 119 SSSRDGYGGSRDSYSSSRSDLYSSGRDQVGRQERGLPPSMERGYPPPRDSYSSSSRGTPR 178
Query: 115 KGGAGG 120
GG GG
Sbjct: 179 GGGRGG 184
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 32.0 bits (71), Expect = 1.2
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 66 NSSRDS--GRGDSVSDSGSDALRSGLT---------VPTSPKGRLLDRRSRSGKGRGLPK 114
+SSRD G DS S S SD SG P+ +G R S S RG P+
Sbjct: 314 SSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSMERGYPPPRDSYSSSSRGAPR 373
Query: 115 KGGAGG 120
GG GG
Sbjct: 374 GGGRGG 379
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 242 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVL 301
+LL L + + PR PQ G F + + C ++ + + R+ K+T+L
Sbjct: 262 QLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEEL---AELLPKRSLDPKSTLL 318
Query: 302 LSMSKGGKRKD 312
LS+S GG D
Sbjct: 319 LSLSSGGSSAD 329
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 242 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVL 301
+LL L + + PR PQ G F + + C ++ + + R+ K+T+L
Sbjct: 262 QLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEEL---AELLPKRSLDPKSTLL 318
Query: 302 LSMSKGGKRKD 312
LS+S GG D
Sbjct: 319 LSLSSGGSSAD 329
>gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo
sapiens]
Length = 500
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 242 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVL 301
+LL L + + PR PQ G F + + C ++ + + R+ K+T+L
Sbjct: 262 QLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEEL---AELLPKRSLDPKSTLL 318
Query: 302 LSMSKGGKRKD 312
LS+S GG D
Sbjct: 319 LSLSSGGSSAD 329
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 242 KLLKDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVL 301
+LL L + + PR PQ G F + + C ++ + + R+ K+T+L
Sbjct: 262 QLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEEL---AELLPKRSLDPKSTLL 318
Query: 302 LSMSKGGKRKD 312
LS+S GG D
Sbjct: 319 LSLSSGGSSAD 329
>gi|66346681 SERPINE1 mRNA binding protein 1 isoform 2 [Homo
sapiens]
Length = 402
Score = 31.6 bits (70), Expect = 1.6
Identities = 34/172 (19%), Positives = 64/172 (37%), Gaps = 34/172 (19%)
Query: 3 VENEQILNVNPADPDNLSDSLFSGDEEN--AGTEEIKNEIN------------GNWISAS 48
++ + N + D N+++ G+E + A TE +NE+ W +
Sbjct: 232 IQKQISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQ 291
Query: 49 SINEARINAKAKRR-------------LRKNSSRDSGRGDSVSDSGSDALRSGLTVPTSP 95
+ + A++ ++ L K+ S ++ DSV D + +T
Sbjct: 292 NKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEI 351
Query: 96 KGRLLDRRSRSGKGRGLPKKGGAGGKGVWGTPGQVYDVEEVDVKDPNYDDDQ 147
L R R G+G G GG+G G P + ++ P+ DD +
Sbjct: 352 NFGDLGRPGRGGRG-------GRGGRGRGGRPNRGSRTDKSSASAPDVDDPE 396
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,825,874
Number of Sequences: 37866
Number of extensions: 822430
Number of successful extensions: 2563
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2501
Number of HSP's gapped (non-prelim): 98
length of query: 469
length of database: 18,247,518
effective HSP length: 106
effective length of query: 363
effective length of database: 14,233,722
effective search space: 5166841086
effective search space used: 5166841086
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.