Guide to the Human Genome
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Name: TRPM6 Sequence: fasta or formatted (2022aa) NCBI GI: 18921093
Description:

transient receptor potential cation channel, subfamily M, member 6

Referenced in:

Calcium and TRP Cation Channels
Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9        100           2
 C cysteine            1.9         38           2
 D aspartate           4.4         88           2
 E glutamate           7.1        144           3
 F phenylalanine       3.8         76           2
 G glycine             4.7         95           3
 H histidine           3.4         69           3
 I isoleucine          5.8        117           3
 K lysine              7.0        141           4
 L leucine            10.1        205           3
 M methionine          2.8         57           1
 N asparagine          4.1         82           4
 P proline             4.5         90           3
 Q glutamine           5.1        103           3
 R arginine            4.7         95           2
 S serine              8.8        177           3
 T threonine           5.4        109           2
 V valine              6.3        127           3
 W tryptophan          2.0         41           1
 Y tyrosine            3.4         68           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transient receptor potential cation channel, subfami... 
TRPM7                 0.361   transient receptor potential cation channel, subfam...
TRPM3                 0.327   transient receptor potential cation channel, subfam...
TRPM3                 0.305   transient receptor potential cation channel, subfam...
TRPM3                 0.304   transient receptor potential cation channel, subfam...
TRPM3                 0.303   transient receptor potential cation channel, subfam...
TRPM3                 0.302   transient receptor potential cation channel, subfam...
TRPM3                 0.301   transient receptor potential cation channel, subfam...
TRPM3                 0.301   transient receptor potential cation channel, subfam...
TRPM1                 0.198   transient receptor potential cation channel, subfami...
TRPM4                 0.108   transient receptor potential cation channel, subfami...
TRPM2                 0.106   transient receptor potential cation channel, subfamil...
TRPM5                 0.099   transient receptor potential cation channel, subfami...
TRPM3                 0.071   transient receptor potential cation channel, subfami...
TRPM3                 0.067   transient receptor potential cation channel, subfami...
TRPM8                 0.047   transient receptor potential cation channel, subfam...
TRPC4                 0.014   transient receptor potential cation channel, subfam...
TRPC4                 0.014   transient receptor potential cation channel, subfam...
TRPC4                 0.014   transient receptor potential cation channel, subfam...
TRPC4                 0.014   transient receptor potential cation channel, subfamil...
TRPC4                 0.013   transient receptor potential cation channel, subfam...
ALPK2                 0.013   heart alpha-kinase 
TRPC5                 0.012   transient receptor potential cation channel, subfamil...
TRPC4                 0.011   transient receptor potential cation channel, subfam...
EEF2K                 0.011   elongation factor-2 kinase 
TRPC7                 0.008   transient receptor potential cation channel, subfamil...
TRPC3                 0.007   transient receptor potential cation channel, subfam...
TRPC3                 0.007   transient receptor potential cation channel, subfamil...
TRPC6                 0.007   transient receptor potential cation channel, subfamil...
ALPK1                 0.007   alpha-kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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