Guide to the Human Genome
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Name: TRPC4 Sequence: fasta or formatted (977aa) NCBI GI: 7706747
Description:

transient receptor potential cation channel, subfamily C, member 4 isoform alpha

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [982aa] transient receptor potential cation channel, subfamily C, member ...
alt prot [893aa] transient receptor potential cation channel, subfamily C, member ...
alt prot [828aa] transient receptor potential cation channel, subfamily C, member ...
alt prot [836aa] transient receptor potential cation channel, subfamily C, member ...
alt prot [804aa] transient receptor potential cation channel, subfamily C, member ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         64           2
 C cysteine            1.5         15           1
 D aspartate           4.4         43           2
 E glutamate           7.4         72           2
 F phenylalanine       5.1         50           1
 G glycine             4.0         39           2
 H histidine           2.3         22           2
 I isoleucine          6.8         66           2
 K lysine              6.3         62           3
 L leucine            12.2        119           4
 M methionine          1.6         16           2
 N asparagine          5.3         52           2
 P proline             4.1         40           3
 Q glutamine           3.9         38           2
 R arginine            5.6         55           3
 S serine              8.1         79           3
 T threonine           4.0         39           2
 V valine              5.8         57           3
 W tryptophan          1.8         18           2
 Y tyrosine            3.2         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transient receptor potential cation channel, subfamil... 
TRPC4                 0.997   transient receptor potential cation channel, subfam...
TRPC4                 0.804   transient receptor potential cation channel, subfam...
TRPC4                 0.752   transient receptor potential cation channel, subfam...
TRPC4                 0.701   transient receptor potential cation channel, subfam...
TRPC4                 0.668   transient receptor potential cation channel, subfam...
TRPC5                 0.636   transient receptor potential cation channel, subfamil...
TRPC1                 0.317   transient receptor potential cation channel, subfamil...
TRPC7                 0.275   transient receptor potential cation channel, subfamil...
TRPC3                 0.265   transient receptor potential cation channel, subfam...
TRPC3                 0.265   transient receptor potential cation channel, subfamil...
TRPC6                 0.265   transient receptor potential cation channel, subfamil...
LOC649660             0.091   PREDICTED: similar to transient receptor potential ...
TRPM8                 0.044   transient receptor potential cation channel, subfam...
TRPM2                 0.033   transient receptor potential cation channel, subfamil...
TRPM1                 0.033   transient receptor potential cation channel, subfami...
TRPM6                 0.031   transient receptor potential cation channel, subfami...
TRPM7                 0.031   transient receptor potential cation channel, subfam...
TRPM3                 0.029   transient receptor potential cation channel, subfam...
TRPM3                 0.029   transient receptor potential cation channel, subfam...
TRPM3                 0.029   transient receptor potential cation channel, subfam...
TRPM3                 0.029   transient receptor potential cation channel, subfam...
TRPM3                 0.029   transient receptor potential cation channel, subfam...
TRPM3                 0.029   transient receptor potential cation channel, subfam...
TRPM3                 0.029   transient receptor potential cation channel, subfam...
LOC100292661          0.029   PREDICTED: similar to transient receptor potential ...
LOC100288724          0.029   PREDICTED: similar to transient receptor potential ...
LOC100288724          0.029   PREDICTED: hypothetical protein XP_002342847, parti...
LOC100288724          0.029   PREDICTED: similar to transient receptor potential ...
TRPM5                 0.021   transient receptor potential cation channel, subfami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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