Guide to the Human Genome
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Name: TRPC4 Sequence: fasta or formatted (804aa) NCBI GI: 209863032
Description:

transient receptor potential cation channel, subfamily C, member 4 isoform zeta

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [982aa] transient receptor potential cation channel, subfamily C, member ...
alt prot [893aa] transient receptor potential cation channel, subfamily C, member ...
alt prot [828aa] transient receptor potential cation channel, subfamily C, member ...
alt prot [836aa] transient receptor potential cation channel, subfamily C, member ...
alt prot [977aa] transient receptor potential cation channel, subfamily C, member ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         55           2
 C cysteine            1.4         11           1
 D aspartate           4.1         33           1
 E glutamate           6.8         55           2
 F phenylalanine       5.5         44           1
 G glycine             4.6         37           2
 H histidine           2.4         19           2
 I isoleucine          6.7         54           2
 K lysine              6.3         51           3
 L leucine            11.9         96           4
 M methionine          2.0         16           2
 N asparagine          5.5         44           2
 P proline             4.0         32           3
 Q glutamine           3.6         29           2
 R arginine            5.5         44           3
 S serine              7.3         59           2
 T threonine           4.2         34           2
 V valine              6.0         48           3
 W tryptophan          2.1         17           2
 Y tyrosine            3.2         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transient receptor potential cation channel, subfam... 
TRPC4                 0.850   transient receptor potential cation channel, subfamil...
TRPC4                 0.846   transient receptor potential cation channel, subfam...
TRPC4                 0.612   transient receptor potential cation channel, subfam...
TRPC4                 0.549   transient receptor potential cation channel, subfam...
TRPC5                 0.476   transient receptor potential cation channel, subfamil...
TRPC4                 0.447   transient receptor potential cation channel, subfam...
TRPC1                 0.242   transient receptor potential cation channel, subfamil...
TRPC7                 0.202   transient receptor potential cation channel, subfamil...
TRPC6                 0.192   transient receptor potential cation channel, subfamil...
TRPC3                 0.190   transient receptor potential cation channel, subfam...
TRPC3                 0.190   transient receptor potential cation channel, subfamil...
LOC649660             0.110   PREDICTED: similar to transient receptor potential ...
TRPM8                 0.044   transient receptor potential cation channel, subfam...
TRPM1                 0.039   transient receptor potential cation channel, subfami...
TRPM6                 0.037   transient receptor potential cation channel, subfami...
TRPM7                 0.037   transient receptor potential cation channel, subfam...
TRPM3                 0.035   transient receptor potential cation channel, subfam...
TRPM3                 0.035   transient receptor potential cation channel, subfam...
TRPM3                 0.035   transient receptor potential cation channel, subfam...
TRPM3                 0.035   transient receptor potential cation channel, subfam...
TRPM3                 0.035   transient receptor potential cation channel, subfam...
TRPM3                 0.035   transient receptor potential cation channel, subfam...
TRPM3                 0.035   transient receptor potential cation channel, subfam...
LOC100292661          0.035   PREDICTED: similar to transient receptor potential ...
LOC100288724          0.035   PREDICTED: similar to transient receptor potential ...
LOC100288724          0.035   PREDICTED: hypothetical protein XP_002342847, parti...
LOC100288724          0.035   PREDICTED: similar to transient receptor potential ...
TRPM2                 0.034   transient receptor potential cation channel, subfamil...
TRPM5                 0.025   transient receptor potential cation channel, subfami...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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