Guide to the Human Genome
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Name: TRPV1 Sequence: fasta or formatted (839aa) NCBI GI: 74315348
Description:

transient receptor potential cation channel, subfamily V, member 1

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt mRNA [839aa] transient receptor potential cation channel, subfamily V, member 1
alt mRNA [839aa] transient receptor potential cation channel, subfamily V, member 1
alt mRNA [839aa] transient receptor potential cation channel, subfamily V, member 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         56           3
 C cysteine            1.9         16           1
 D aspartate           5.5         46           2
 E glutamate           5.8         49           2
 F phenylalanine       5.6         47           3
 G glycine             5.7         48           2
 H histidine           1.5         13           1
 I isoleucine          4.5         38           2
 K lysine              6.0         50           2
 L leucine            12.2        102           3
 M methionine          2.7         23           1
 N asparagine          3.9         33           2
 P proline             4.5         38           3
 Q glutamine           3.3         28           2
 R arginine            5.2         44           2
 S serine              7.3         61           3
 T threonine           6.6         55           2
 V valine              5.7         48           2
 W tryptophan          1.3         11           1
 Y tyrosine            3.9         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transient receptor potential cation channel, subfami... 
TRPV1                 1.000   transient receptor potential cation channel, subfami...
TRPV1                 1.000   transient receptor potential cation channel, subfami...
TRPV1                 1.000   transient receptor potential cation channel, subfami...
TRPV4                 0.397   transient receptor potential cation channel, subfami...
TRPV2                 0.364   transient receptor potential cation channel, subfami...
TRPV3                 0.311   transient receptor potential cation channel, subfami...
TRPV4                 0.209   transient receptor potential cation channel, subfami...
TRPV6                 0.130   transient receptor potential cation channel, subfami...
TRPV5                 0.129   transient receptor potential cation channel, subfami...
ANK3                  0.017   ankyrin 3 isoform 1 
TRPC5                 0.016   transient receptor potential cation channel, subfamil...
TRPC4                 0.015   transient receptor potential cation channel, subfam...
TRPC4                 0.015   transient receptor potential cation channel, subfam...
TRPC4                 0.015   transient receptor potential cation channel, subfam...
TRPC4                 0.015   transient receptor potential cation channel, subfam...
TRPC4                 0.015   transient receptor potential cation channel, subfamil...
ANKRD27               0.015   ankyrin repeat domain 27 (VPS9 domain) 
TRPA1                 0.014   ankyrin-like protein 1 
ANKRD54               0.014   ankyrin repeat domain 54 
ANK2                  0.013   ankyrin 2 isoform 3 
ANK2                  0.013   ankyrin 2 isoform 2 
ANK2                  0.013   ankyrin 2 isoform 1 
TRPC1                 0.013   transient receptor potential cation channel, subfamil...
ANK1                  0.013   ankyrin 1 isoform 9 
ANK1                  0.013   ankyrin 1 isoform 1 
ANK1                  0.013   ankyrin 1 isoform 3 
ANK1                  0.013   ankyrin 1 isoform 2 
ANK1                  0.013   ankyrin 1 isoform 4 
TRPC4                 0.013   transient receptor potential cation channel, subfam...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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