Guide to the Human Genome
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Name: TRPV4 Sequence: fasta or formatted (871aa) NCBI GI: 22547184
Description:

transient receptor potential cation channel, subfamily V, member 4 isoform a

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [811aa] transient receptor potential cation channel, subfamily V, member ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         52           2
 C cysteine            1.5         13           1
 D aspartate           5.6         49           2
 E glutamate           5.3         46           2
 F phenylalanine       5.3         46           3
 G glycine             6.7         58           2
 H histidine           1.8         16           2
 I isoleucine          5.1         44           2
 K lysine              5.2         45           2
 L leucine            11.7        102           4
 M methionine          2.5         22           2
 N asparagine          4.6         40           2
 P proline             6.2         54           3
 Q glutamine           2.4         21           2
 R arginine            6.0         52           2
 S serine              6.7         58           2
 T threonine           5.6         49           2
 V valine              6.5         57           3
 W tryptophan          1.3         11           1
 Y tyrosine            4.1         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transient receptor potential cation channel, subfami... 
TRPV4                 0.487   transient receptor potential cation channel, subfami...
TRPV1                 0.378   transient receptor potential cation channel, subfami...
TRPV1                 0.378   transient receptor potential cation channel, subfami...
TRPV1                 0.378   transient receptor potential cation channel, subfami...
TRPV1                 0.378   transient receptor potential cation channel, subfami...
TRPV2                 0.303   transient receptor potential cation channel, subfami...
TRPV3                 0.295   transient receptor potential cation channel, subfami...
TRPV6                 0.140   transient receptor potential cation channel, subfami...
TRPV5                 0.138   transient receptor potential cation channel, subfami...
TRPA1                 0.022   ankyrin-like protein 1 
TRPM5                 0.019   transient receptor potential cation channel, subfami...
TRPM2                 0.013   transient receptor potential cation channel, subfamil...
TRPM8                 0.013   transient receptor potential cation channel, subfam...
ANKRD27               0.010   ankyrin repeat domain 27 (VPS9 domain) 
TRPC7                 0.009   transient receptor potential cation channel, subfamil...
LOC649660             0.009   PREDICTED: similar to transient receptor potential ...
ANKS6                 0.009   ankyrin repeat and sterile alpha motif domain contai...
TRPC3                 0.008   transient receptor potential cation channel, subfam...
TRPC3                 0.008   transient receptor potential cation channel, subfamil...
ANK2                  0.008   ankyrin 2 isoform 3 
ANK2                  0.008   ankyrin 2 isoform 2 
ANK2                  0.008   ankyrin 2 isoform 1 
TRPC6                 0.007   transient receptor potential cation channel, subfamil...
ANK1                  0.007   ankyrin 1 isoform 9 
ANK1                  0.007   ankyrin 1 isoform 1 
ANK1                  0.007   ankyrin 1 isoform 3 
ANK1                  0.007   ankyrin 1 isoform 2 
ANK1                  0.007   ankyrin 1 isoform 4 
ANK3                  0.007   ankyrin 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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