Guide to the Human Genome
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Name: SEL1L2 Sequence: fasta or formatted (688aa) NCBI GI: 151301150
Description:

sel-1 suppressor of lin-12-like 2

Referenced in:

Fibronectin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         71           2
 C cysteine            0.6          4           1
 D aspartate           3.8         26           1
 E glutamate           5.4         37           2
 F phenylalanine       4.2         29           2
 G glycine             7.4         51           2
 H histidine           2.6         18           2
 I isoleucine          6.2         43           2
 K lysine              9.0         62           3
 L leucine            11.2         77           3
 M methionine          3.1         21           2
 N asparagine          5.4         37           2
 P proline             1.7         12           1
 Q glutamine           5.2         36           2
 R arginine            3.1         21           2
 S serine              5.1         35           2
 T threonine           3.6         25           2
 V valine              4.1         28           2
 W tryptophan          1.2          8           1
 Y tyrosine            6.8         47           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sel-1 suppressor of lin-12-like 2 
SEL1L                 0.456   sel-1 suppressor of lin-12-like 
KIAA0746              0.095   hypothetical protein LOC23231 
KIAA0141              0.024   hypothetical protein LOC9812 
KIAA0141              0.024   hypothetical protein LOC9812 
LRP2BP                0.022   LRP2 binding protein 
C1orf163              0.018   hypothetical protein LOC65260 
ANKRD11               0.010   ankyrin repeat domain 11 
HOOK3                 0.009   golgi-associated microtubule-binding protein HOOK3 [...
ROCK2                 0.008   Rho-associated, coiled-coil containing protein kinas...
LOC653125             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.007   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC643699             0.007   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653073             0.007   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.007   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653073             0.007   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653720             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.007   PREDICTED: similar to Golgin subfamily A member 8-l...
PCNT                  0.007   pericentrin 
KDM6A                 0.007   ubiquitously transcribed tetratricopeptide repeat, ...
SR140                 0.007   U2-associated SR140 protein 
WDR87                 0.007   NYD-SP11 protein 
CCDC62                0.006   coiled-coil domain containing 62 isoform b 
CCDC62                0.006   coiled-coil domain containing 62 isoform a 
RTF1                  0.006   Paf1/RNA polymerase II complex component 
TNNT2                 0.006   troponin T type 2, cardiac isoform 2 
LOC728080             0.006   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.006   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.006   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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