Search of human proteins with 217272816

Search of human proteins with 217272816

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
         (348 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]                    679   0.0  
gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]                    541   e-154
gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]                     325   5e-89
gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]                      86   5e-17
gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]                      85   1e-16
gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]                      85   1e-16
gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]                   71   1e-12
gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]             65   1e-10
gi|153946430 X-ray repair cross complementing protein 3 [Homo sa...    56   4e-08
gi|153946427 X-ray repair cross complementing protein 3 [Homo sa...    56   4e-08
gi|4885659 X-ray repair cross complementing protein 3 [Homo sapi...    56   4e-08
gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]      48   1e-05
gi|38788372 aquarius [Homo sapiens]                                    37   0.034
gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]        36   0.058
gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]            34   0.22 
gi|24308257 vesicle amine transport protein 1 homolog (T. califo...    33   0.29 
gi|4885657 X-ray repair cross complementing protein 2 [Homo sapi...    33   0.38 
gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a ...    33   0.38 
gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b...    33   0.38 
gi|154354992 B-box and SPRY domain containing [Homo sapiens]           32   0.65 
gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]                    32   1.1  
gi|119703755 laminin, beta 2 precursor [Homo sapiens]                  31   1.4  
gi|15147219 purine-rich element binding protein B [Homo sapiens]       31   1.4  
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]    29   5.5  
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]    29   5.5  
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]        29   5.5  
gi|31377557 hypothetical protein LOC131583 [Homo sapiens]              29   5.5  
gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre...    28   9.3  
gi|58331189 T-cell lymphoma invasion and metastasis 2 isoform b ...    28   9.3  
gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a ...    28   9.3  

>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
          Length = 348

 Score =  679 bits (1752), Expect = 0.0
 Identities = 348/348 (100%), Positives = 348/348 (100%)

Query: 1   MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG 60
           MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG
Sbjct: 1   MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG 60

Query: 61  LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG 120
           LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG
Sbjct: 61  LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG 120

Query: 121 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ 180
           EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
Sbjct: 121 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ 180

Query: 181 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ 240
           AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
Sbjct: 181 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ 240

Query: 241 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT 300
           REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
Sbjct: 241 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT 300

Query: 301 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 348
           IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
Sbjct: 301 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 348


>gi|217416415 RAD51-like 3 isoform 1 [Homo sapiens]
          Length = 328

 Score =  541 bits (1393), Expect = e-154
 Identities = 293/348 (84%), Positives = 297/348 (85%), Gaps = 20/348 (5%)

Query: 1   MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGG 60
           MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYK   A     L  
Sbjct: 1   MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQ 60

Query: 61  LQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTG 120
                V     +  ++ +      G G                     LDKLLDAGLYTG
Sbjct: 61  FSAFPVNGADLYEELKTSTAILSTGIGS--------------------LDKLLDAGLYTG 100

Query: 121 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ 180
           EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ
Sbjct: 101 EVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQ 160

Query: 181 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ 240
           AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ
Sbjct: 161 AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQ 220

Query: 241 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT 300
           REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT
Sbjct: 221 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLDT 280

Query: 301 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 348
           IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
Sbjct: 281 IEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 328


>gi|19924125 RAD51-like 3 isoform 4 [Homo sapiens]
          Length = 216

 Score =  325 bits (832), Expect = 5e-89
 Identities = 168/169 (99%), Positives = 169/169 (100%)

Query: 180 QAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQ 239
           +AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQ
Sbjct: 48  KAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQ 107

Query: 240 QREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLD 299
           QREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLD
Sbjct: 108 QREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGRSWSFVPSTRILLD 167

Query: 300 TIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 348
           TIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT
Sbjct: 168 TIEGAGASGGRRMACLAKSSRQPTGFQEMVDIGTWGTSEQSATLQGDQT 216



 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 1  MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYK 48
          MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYK
Sbjct: 1  MGVLRVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYK 48


>gi|19924117 RAD51-like 1 isoform 2 [Homo sapiens]
          Length = 350

 Score = 85.9 bits (211), Expect = 5e-17
 Identities = 94/372 (25%), Positives = 157/372 (42%), Gaps = 68/372 (18%)

Query: 11  GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGGLQLPQVPAGR 70
           GL++E+   L  H+I T  D +     E+ +  GLSY+    H    L  +     P  +
Sbjct: 10  GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRG--VHEL--LCMVSRACAPKMQ 65

Query: 71  SWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPG 130
           +  G++ A + A              F     + + S LD+ L  G+  G +TEI G PG
Sbjct: 66  TAYGIK-AQRSAD-------------FSPAFLSTTLSALDEALHGGVACGSLTEITGPPG 111

Query: 131 SGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEAL 184
            GKTQ C+ M+          GL+  V+Y+D+    +A RL+++ +++  +    + + L
Sbjct: 112 CGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLL 171

Query: 185 RRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQ 240
                VH +      +VLQ +     + +   S  +K+V++DSV +VV       L G  
Sbjct: 172 LTSSKVHLYRELTCDEVLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNL 228

Query: 241 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRD------------------------ 276
           +E    + + A  LK LA +  + V++TN IT                            
Sbjct: 229 KERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSG 288

Query: 277 SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP-TGFQEMVDIGTWG 335
           S  +  ALG +WS   +TR++L  ++       RR   +AKS   P T F        + 
Sbjct: 289 SSCVIAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAPFTSF-------VYT 336

Query: 336 TSEQSATLQGDQ 347
             E+   LQG +
Sbjct: 337 IKEEGLVLQGQE 348


>gi|46255039 RAD51-like 1 isoform 3 [Homo sapiens]
          Length = 384

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 88/346 (25%), Positives = 148/346 (42%), Gaps = 60/346 (17%)

Query: 11  GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGGLQLPQVPAGR 70
           GL++E+   L  H+I T  D +     E+ +  GLSY+    H    L  +     P  +
Sbjct: 10  GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRG--VHEL--LCMVSRACAPKMQ 65

Query: 71  SWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPG 130
           +  G++ A + A              F     + + S LD+ L  G+  G +TEI G PG
Sbjct: 66  TAYGIK-AQRSAD-------------FSPAFLSTTLSALDEALHGGVACGSLTEITGPPG 111

Query: 131 SGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEAL 184
            GKTQ C+ M+          GL+  V+Y+D+    +A RL+++ +++  +    + + L
Sbjct: 112 CGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLL 171

Query: 185 RRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQ 240
                VH +      +VLQ +     + +   S  +K+V++DSV +VV       L G  
Sbjct: 172 LTSSKVHLYRELTCDEVLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNL 228

Query: 241 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRD------------------------ 276
           +E    + + A  LK LA +  + V++TN IT                            
Sbjct: 229 KERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSG 288

Query: 277 SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP 322
           S  +  ALG +WS   +TR++L  ++       RR   +AKS   P
Sbjct: 289 SSCVIAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP 329


>gi|10835029 RAD51-like 1 isoform 1 [Homo sapiens]
          Length = 350

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 88/346 (25%), Positives = 148/346 (42%), Gaps = 60/346 (17%)

Query: 11  GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGGLQLPQVPAGR 70
           GL++E+   L  H+I T  D +     E+ +  GLSY+    H    L  +     P  +
Sbjct: 10  GLSQELCDRLSRHQILTCQDFLCLSPLELMKVTGLSYRG--VHEL--LCMVSRACAPKMQ 65

Query: 71  SWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPG 130
           +  G++ A + A              F     + + S LD+ L  G+  G +TEI G PG
Sbjct: 66  TAYGIK-AQRSAD-------------FSPAFLSTTLSALDEALHGGVACGSLTEITGPPG 111

Query: 131 SGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGLTASRLLQLLQAK-TQDEEEQAEAL 184
            GKTQ C+ M+          GL+  V+Y+D+    +A RL+++ +++  +    + + L
Sbjct: 112 CGKTQFCIMMSILATLPTNMGGLEGAVVYIDTESAFSAERLVEIAESRFPRYFNTEEKLL 171

Query: 185 RRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVV----SPLLGGQQ 240
                VH +      +VLQ +     + +   S  +K+V++DSV +VV       L G  
Sbjct: 172 LTSSKVHLYRELTCDEVLQRIESLEEEII---SKGIKLVILDSVASVVRKEFDAQLQGNL 228

Query: 241 REGLALMMQLARELKTLARDLGMAVVVTNHITRDRD------------------------ 276
           +E    + + A  LK LA +  + V++TN IT                            
Sbjct: 229 KERNKFLAREASSLKYLAEEFSIPVILTNQITTHLSGALASQADLVSPADDLSLSEGTSG 288

Query: 277 SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQP 322
           S  +  ALG +WS   +TR++L  ++       RR   +AKS   P
Sbjct: 289 SSCVIAALGNTWSHSVNTRLILQYLDSE-----RRQILIAKSPLAP 329


>gi|17402896 RAD51 homolog C isoform 1 [Homo sapiens]
          Length = 376

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 66/253 (26%), Positives = 111/253 (43%), Gaps = 37/253 (14%)

Query: 107 SRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVA-----HGLQQNVLYVDSNGGL 161
           S LD +L  G+   + TEI G PG GKTQ+C+ +A +V       G+    +++D+ G  
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSF 164

Query: 162 TASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVT------- 214
              R++ L  A  Q  +  AE  +  +   A + F + ++L  +     +  T       
Sbjct: 165 MVDRVVDLATACIQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVY 224

Query: 215 ------GSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVT 268
                      V++V+VD +       L         L+  LA+++ +LA +  +AV++T
Sbjct: 225 LLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLR-TRLLNGLAQQMISLANNHRLAVILT 283

Query: 269 NHITR--DRDSGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQ----- 321
           N +T   DR+   L PALG SW    + R++            +R+A L KS  Q     
Sbjct: 284 NQMTTKIDRNQALLVPALGESWGHAATIRLIFHW------DRKQRLATLYKSPSQKECTV 337

Query: 322 -----PTGFQEMV 329
                P GF++ V
Sbjct: 338 LFQIKPQGFRDTV 350


>gi|19924133 RAD51 homolog protein isoform 1 [Homo sapiens]
          Length = 339

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 24/207 (11%)

Query: 106 TSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANV-----AHGLQQNVLYVDSNGG 160
           +  LDKLL  G+ TG +TE+ G   +GKTQ+C  +A          G +   +Y+D+ G 
Sbjct: 106 SKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 165

Query: 161 LTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTV 220
               RLL + +   +     ++ L  +    AF+      +L +    + +         
Sbjct: 166 FRPERLLAVAE---RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVE------SRY 216

Query: 221 KVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITRDRDS 277
            +++VDS TA+      G + E  A  M LAR L+ L R   + G+AVV+TN +    D 
Sbjct: 217 ALLIVDSATALYRTDYSG-RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDG 275

Query: 278 GRL------KPALGRSWSFVPSTRILL 298
             +      KP  G   +   +TR+ L
Sbjct: 276 AAMFAADPKKPIGGNIIAHASTTRLYL 302


>gi|153946430 X-ray repair cross complementing protein 3 [Homo
           sapiens]
          Length = 346

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 34/237 (14%)

Query: 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---GLQQNVLYVDSNGGLTA 163
           LD LL  GL    +TE+ G   +GKTQ+   LC+A        GL+   +Y+ +      
Sbjct: 89  LDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPH 148

Query: 164 SRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLDVLQELRGTVAQQVTGS 216
            RL QL+    + +T    E  + LR   +I + H  D+  +L+ + +        V  S
Sbjct: 149 KRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNK-----KVPVLLS 203

Query: 217 SGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLARDLGMAVVVTNHITRDR 275
            G  ++VV+DSV A        Q     A  +Q L   L+ L+      V+  N +T   
Sbjct: 204 RGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAM 263

Query: 276 D------------SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR 320
           +              R+ PALG +W+     R+L D +    A+    + C A++ R
Sbjct: 264 EEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA----LGCPARTLR 316


>gi|153946427 X-ray repair cross complementing protein 3 [Homo
           sapiens]
          Length = 346

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 34/237 (14%)

Query: 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---GLQQNVLYVDSNGGLTA 163
           LD LL  GL    +TE+ G   +GKTQ+   LC+A        GL+   +Y+ +      
Sbjct: 89  LDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPH 148

Query: 164 SRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLDVLQELRGTVAQQVTGS 216
            RL QL+    + +T    E  + LR   +I + H  D+  +L+ + +        V  S
Sbjct: 149 KRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNK-----KVPVLLS 203

Query: 217 SGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLARDLGMAVVVTNHITRDR 275
            G  ++VV+DSV A        Q     A  +Q L   L+ L+      V+  N +T   
Sbjct: 204 RGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAM 263

Query: 276 D------------SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR 320
           +              R+ PALG +W+     R+L D +    A+    + C A++ R
Sbjct: 264 EEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA----LGCPARTLR 316


>gi|4885659 X-ray repair cross complementing protein 3 [Homo
           sapiens]
          Length = 346

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 62/237 (26%), Positives = 100/237 (42%), Gaps = 34/237 (14%)

Query: 109 LDKLLDAGLYTGEVTEIVGGPGSGKTQVC--LCMAANVAH---GLQQNVLYVDSNGGLTA 163
           LD LL  GL    +TE+ G   +GKTQ+   LC+A        GL+   +Y+ +      
Sbjct: 89  LDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPH 148

Query: 164 SRLLQLL----QAKTQDEEEQAEALR---RIQVVHAFDIFQMLDVLQELRGTVAQQVTGS 216
            RL QL+    + +T    E  + LR   +I + H  D+  +L+ + +        V  S
Sbjct: 149 KRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNK-----KVPVLLS 203

Query: 217 SGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQ-LARELKTLARDLGMAVVVTNHITRDR 275
            G  ++VV+DSV A        Q     A  +Q L   L+ L+      V+  N +T   
Sbjct: 204 RGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAM 263

Query: 276 D------------SGRLKPALGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSR 320
           +              R+ PALG +W+     R+L D +    A+    + C A++ R
Sbjct: 264 EEQGAAHGPLGFWDERVSPALGITWANQLLVRLLADRLREEEAA----LGCPARTLR 316


>gi|23238219 DMC1 dosage suppressor of mck1 homolog [Homo sapiens]
          Length = 340

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 20/206 (9%)

Query: 106 TSRLDKLLDAGLYTGEVTEIVGGPGSGKTQV--CLCMAANV--AHGLQ-QNVLYVDSNGG 160
           +   DKLL  G+ +  +TE  G   +GKTQ+   LC+ A +  A G     ++++D+   
Sbjct: 105 SQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 164

Query: 161 LTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTV 220
               RL  +      D +     L  +    A+     +++L      VA +    +G  
Sbjct: 165 FRPDRLRDIADRFNVDHD---AVLDNVLYARAYTSEHQMELLD----YVAAKFHEEAGIF 217

Query: 221 KVVVVDSVTAV--VSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDR--- 275
           K++++DS+ A+  V     G+  E    + Q+   L+ ++ +  +AV VTN +T D    
Sbjct: 218 KLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGAT 277

Query: 276 ---DSGRLKPALGRSWSFVPSTRILL 298
               +   KP  G   +   +TRI L
Sbjct: 278 MTFQADPKKPIGGHILAHASTTRISL 303


>gi|38788372 aquarius [Homo sapiens]
          Length = 1485

 Score = 36.6 bits (83), Expect = 0.034
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 99  ERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSN 158
           +R T   T    + + AG+  G +T +VG PG+GKT V + + +N+ H   +    + ++
Sbjct: 796 KRNTIQFTHTQIEAIRAGMQPG-LTMVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTH 854

Query: 159 GGLTASRLLQLLQAKTQDE 177
                ++L + + A   DE
Sbjct: 855 SNQALNQLFEKIMALDIDE 873


>gi|46592991 GRIP1 associated protein 1 isoform 1 [Homo sapiens]
          Length = 841

 Score = 35.8 bits (81), Expect = 0.058
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 148 LQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRG 207
           LQ  V  +D   G    RL +  ++  Q ++EQ EAL++ +  HA ++    + LQ++R 
Sbjct: 511 LQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEEALKQCREQHAAELKGKEEELQDVRD 570

Query: 208 TVAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQ---QREGLALMMQLAREL 254
            + Q        +K   + S+   V   + GQ   +++G A +  L R+L
Sbjct: 571 QLEQAQEERDCHLK--TISSLKQEVKDTVDGQRILEKKGSAALKDLKRQL 618


>gi|154275771 RAD51 homolog protein isoform 2 [Homo sapiens]
          Length = 242

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 222 VVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLAR---DLGMAVVVTNHITRDRDSG 278
           +++VDS TA+      G+  E  A  M LAR L+ L R   + G+AVV+TN +    D  
Sbjct: 121 LLIVDSATALYRTDYSGRG-ELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGA 179

Query: 279 RL------KPALGRSWSFVPSTRILL 298
            +      KP  G   +   +TR+ L
Sbjct: 180 AMFAADPKKPIGGNIIAHASTTRLYL 205


>gi|24308257 vesicle amine transport protein 1 homolog (T.
           californica)-like [Homo sapiens]
          Length = 419

 Score = 33.5 bits (75), Expect = 0.29
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 5   RVGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGGLQL 63
           R GL  G+ E++I L    +IK VVD + A LEEV +         R H  GN+G L L
Sbjct: 327 RAGLIRGVVEKLIGLYNQKKIKPVVDSLWA-LEEVKE------AMQRIHDRGNIGKLIL 378


>gi|4885657 X-ray repair cross complementing protein 2 [Homo
           sapiens]
          Length = 280

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 120 GEVTEIVGGPGSGKTQVCL-----CMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKT 174
           G++ E  G  G+GKT++       C+      GL+  VL++D++      RL+ +L+ + 
Sbjct: 41  GDILEFHGPEGTGKTEMLYHLTARCILPKSEGGLEVEVLFIDTDYHFDMLRLVTILEHRL 100

Query: 175 QDEEEQ--AEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTA 230
               E+     L R  +V+      +L  L  L     + +  S  ++ ++++DS++A
Sbjct: 101 SQSSEEIIKYCLGRFFLVYCSSSTHLLLTLYSL-----ESMFCSHPSLCLLILDSLSA 153


>gi|14141152 heterogeneous nuclear ribonucleoprotein M isoform a
           [Homo sapiens]
          Length = 730

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 56  GNLGGLQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDA 115
           GN+G       PAG    G+   + K G G  G  G  +      G+ ++  R++++L  
Sbjct: 327 GNIG-------PAGMGMEGIGFGINKMG-GMEGPFGGGMENMGRFGSGMNMGRINEILSN 378

Query: 116 GLYTGEVTEIVGGPGSG 132
            L  GE+    GG G G
Sbjct: 379 ALKRGEIIAKQGGGGGG 395


>gi|157412270 heterogeneous nuclear ribonucleoprotein M isoform b
           [Homo sapiens]
          Length = 691

 Score = 33.1 bits (74), Expect = 0.38
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 56  GNLGGLQLPQVPAGRSWSGVRNALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDA 115
           GN+G       PAG    G+   + K G G  G  G  +      G+ ++  R++++L  
Sbjct: 288 GNIG-------PAGMGMEGIGFGINKMG-GMEGPFGGGMENMGRFGSGMNMGRINEILSN 339

Query: 116 GLYTGEVTEIVGGPGSG 132
            L  GE+    GG G G
Sbjct: 340 ALKRGEIIAKQGGGGGG 356


>gi|154354992 B-box and SPRY domain containing [Homo sapiens]
          Length = 402

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 82  AGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMA 141
           AGLG G   G  +   +ER   +    +D+     L +  +T+ V     GK Q  + MA
Sbjct: 45  AGLG-GRCRGHRIRRAEERAEELRNKIVDQCERLQLQSAAITKYVADVLPGKNQRAVSMA 103

Query: 142 ANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDV 201
           +     + Q +  V S       RLL+    +   EEE+A      Q VH  +  Q LD 
Sbjct: 104 SAARELVIQRLSLVRSLCESEEQRLLE----QVHGEEERAHQSILTQRVHWAEALQKLDT 159

Query: 202 LQ 203
           ++
Sbjct: 160 IR 161


>gi|4506391 RAD51 homolog C isoform 2 [Homo sapiens]
          Length = 135

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 107 SRLDKLLDAGLYTGEVTEIVGGPGSGKTQV 136
           S LD +L  G+   + TEI G PG GKTQ+
Sbjct: 105 SALDDILGGGVPLMKTTEICGAPGVGKTQL 134


>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
          Length = 1798

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/61 (31%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 165  RLLQLLQAKTQDEEEQAEALRRIQVVHAFD--IFQMLDVLQELRGTVAQQVTGSSGTVKV 222
            R++Q L A+TQ  E++A+ L++  V+ AF+   + M + L  ++G V  + T ++ T ++
Sbjct: 1199 RVVQDLAARTQRLEQRAQELQQTGVLGAFESSFWHMQEKLGIVQGIVGARNTSAASTAQL 1258

Query: 223  V 223
            V
Sbjct: 1259 V 1259


>gi|15147219 purine-rich element binding protein B [Homo sapiens]
          Length = 312

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 82  AGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPGSG 132
           AG G GG       A   +G       L KL+D   Y GE  E+ GGPG G
Sbjct: 159 AGPGPGGLQSGQTIALPAQGLIEFRDALAKLIDD--YGGEDDELAGGPGGG 207


>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
          Length = 2454

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 194 DIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVS 233
           DIF+ L+   E++ +V  Q  GSSGT + V   SV   +S
Sbjct: 489 DIFENLETAMEVQSSVDHQGDGSSGTEQEVESSSVKLNIS 528


>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
          Length = 2492

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 194 DIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAVVS 233
           DIF+ L+   E++ +V  Q  GSSGT + V   SV   +S
Sbjct: 527 DIFENLETAMEVQSSVDHQGDGSSGTEQEVESSSVKLNIS 566


>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
          Length = 3996

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 284  LGRSWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQPT-------GFQEMVDIGT 333
            L R+  ++P      ++I   G+S GR++A L + +RQ         GF+E + IG+
Sbjct: 1692 LSRALMYIPQLGKYAESILENGSSSGRKLAKLQRIARQAVAALCALGGFKETIKIGS 1748


>gi|31377557 hypothetical protein LOC131583 [Homo sapiens]
          Length = 423

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 9/87 (10%)

Query: 172 AKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTVKVVVVDSVTAV 231
           A+    EE+AEA R + V   F+   +LD L+  RG       GS G           A 
Sbjct: 287 AEGDPAEEEAEAQRALVVAMHFECGDLLDTLENGRGEALGGGGGSLGP---------GAG 337

Query: 232 VSPLLGGQQREGLALMMQLARELKTLA 258
             PLL G   +  A + QL  +L  L+
Sbjct: 338 PPPLLLGSASDMKAELSQLISDLGELS 364


>gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase
           precursor [Homo sapiens]
          Length = 339

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 209 VAQQVTGSSGTVKVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDL----GMA 264
           +A  +  ++ + K+ +V++  A++ P  GG QR   A+ M LA+EL   AR L      A
Sbjct: 192 LACDIRVAASSAKMGLVETKLAII-PGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKA 250

Query: 265 VVVTNHITRDRDSG--RLKPALGRSWSFVP 292
           V + +H+      G    + AL  +  F+P
Sbjct: 251 VGLISHVLEQNQEGDAAYRKALDLAREFLP 280


>gi|58331189 T-cell lymphoma invasion and metastasis 2 isoform b
           [Homo sapiens]
          Length = 626

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 22/95 (23%), Positives = 37/95 (38%)

Query: 227 SVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGR 286
           ++  V+  +L    R  +   + L +  K     L   V V+  +   R    LK +   
Sbjct: 370 NIVKVIRSILRENFRRHIKCELPLEKTCKDRLVPLKNRVPVSAKLASSRSLKVLKNSSSN 429

Query: 287 SWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQ 321
            W+       LLD+ EG+ +SG +   C     RQ
Sbjct: 430 EWTGETGKGTLLDSDEGSLSSGTQSSGCPTAEGRQ 464


>gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a [Homo
            sapiens]
          Length = 1701

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 22/95 (23%), Positives = 37/95 (38%)

Query: 227  SVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRDRDSGRLKPALGR 286
            ++  V+  +L    R  +   + L +  K     L   V V+  +   R    LK +   
Sbjct: 1445 NIVKVIRSILRENFRRHIKCELPLEKTCKDRLVPLKNRVPVSAKLASSRSLKVLKNSSSN 1504

Query: 287  SWSFVPSTRILLDTIEGAGASGGRRMACLAKSSRQ 321
             W+       LLD+ EG+ +SG +   C     RQ
Sbjct: 1505 EWTGETGKGTLLDSDEGSLSSGTQSSGCPTAEGRQ 1539


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,300,596
Number of Sequences: 37866
Number of extensions: 523658
Number of successful extensions: 1520
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1475
Number of HSP's gapped (non-prelim): 46
length of query: 348
length of database: 18,247,518
effective HSP length: 103
effective length of query: 245
effective length of database: 14,347,320
effective search space: 3515093400
effective search space used: 3515093400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.