Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 215599508

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|215599508 hypothetical protein LOC51250 isoform a [Homo
sapiens]
         (240 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|215599570 hypothetical protein LOC51250 isoform b [Homo sapiens]   479   e-136
gi|215599508 hypothetical protein LOC51250 isoform a [Homo sapiens]   479   e-136
gi|7706029 hypothetical protein LOC51250 isoform a [Homo sapiens]     479   e-136
gi|4504425 high-mobility group box 1 [Homo sapiens]                    39   0.005
gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo sap...    37   0.012
gi|122937345 myosin VB [Homo sapiens]                                  36   0.034
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]       36   0.034
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]       36   0.034
gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]        36   0.034
gi|40254947 thioredoxin-related transmembrane protein 4 [Homo sa...    36   0.034
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]           34   0.099
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]           34   0.099
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]       34   0.099
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]            34   0.099
gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Hom...    34   0.13 
gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Hom...    34   0.13 
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]     34   0.13 
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]     34   0.13 
gi|4503257 death-domain associated protein isoform a [Homo sapiens]    33   0.17 
gi|215422388 death-domain associated protein isoform a [Homo sap...    33   0.17 
gi|215422366 death-domain associated protein isoform b [Homo sap...    33   0.17 
gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]         33   0.17 
gi|50726968 microfibrillar-associated protein 1 [Homo sapiens]         33   0.17 
gi|42740903 MTERF domain containing 2 [Homo sapiens]                   33   0.22 
gi|4758650 kinesin family member 5C [Homo sapiens]                     33   0.22 
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]    33   0.22 
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]    33   0.22 
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]    33   0.22 
gi|219521893 coiled-coil transcriptional coactivator isoform 2 [...    33   0.22 
gi|6912398 general transcription factor IIIC, polypeptide 3, 102...    33   0.22 

>gi|215599570 hypothetical protein LOC51250 isoform b [Homo sapiens]
          Length = 245

 Score =  479 bits (1234), Expect = e-136
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
           MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY
Sbjct: 6   MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 65

Query: 61  NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120
           NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE
Sbjct: 66  NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 125

Query: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
           ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR
Sbjct: 126 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 185

Query: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
           TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK
Sbjct: 186 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 245


>gi|215599508 hypothetical protein LOC51250 isoform a [Homo sapiens]
          Length = 240

 Score =  479 bits (1234), Expect = e-136
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
           MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY
Sbjct: 1   MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60

Query: 61  NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120
           NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE
Sbjct: 61  NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120

Query: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
           ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR
Sbjct: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180

Query: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
           TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK
Sbjct: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240


>gi|7706029 hypothetical protein LOC51250 isoform a [Homo sapiens]
          Length = 240

 Score =  479 bits (1234), Expect = e-136
 Identities = 240/240 (100%), Positives = 240/240 (100%)

Query: 1   MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60
           MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY
Sbjct: 1   MAMASVKLLAGVLRKPDAWIGLWGVLRGTPSSYKLCTSWNRYLYFSSTKLRAPNYKTLFY 60

Query: 61  NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120
           NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE
Sbjct: 61  NIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEE 120

Query: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
           ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR
Sbjct: 121 ELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180

Query: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
           TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK
Sbjct: 181 TVKVGDTLDLLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240


>gi|4504425 high-mobility group box 1 [Homo sapiens]
          Length = 215

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 85  KSNIRSTKSTKKSLQKVDEED-SDEESHHDEMSEQEEELEDD 125
           K  +++ KS KK  ++ DEED  DEE   DE  E EEE +DD
Sbjct: 173 KGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDD 214



 Score = 27.7 bits (60), Expect = 9.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 93  STKKSLQKVDEEDSDEESHHDEMSEQEEELEDD 125
           + KK + K ++    +E   DE  E++EE E+D
Sbjct: 170 AAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEED 202


>gi|239050813 lipoxygenase homology domains 1 isoform 1 [Homo
           sapiens]
          Length = 2211

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 15/63 (23%), Positives = 36/63 (57%)

Query: 83  RLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSF 142
           RLK+ ++  K  +K   + DE + +E S  +E S +EEE+E++    +    +++ ++  
Sbjct: 931 RLKAKLQRKKKKRKGSDEEDEGEEEESSSSEESSSEEEEMEEEEEEEEFGPGMQEVIEQH 990

Query: 143 RYD 145
           +++
Sbjct: 991 KFE 993


>gi|122937345 myosin VB [Homo sapiens]
          Length = 1848

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 12/135 (8%)

Query: 99   QKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDV-VLKTGLDIGRN 157
            Q  DE   +    +    E EEE      +VK Y  LE+   + R ++ ++K      RN
Sbjct: 1041 QSKDEFAQNSVKENLMKKELEEERSRYQNLVKEYSQLEQRYDNLRDEMTIIKQTPGHRRN 1100

Query: 158  KVEDAFYKGELRLNEEKLWKKSRTVKVGDTLDLL-----IGEDKEAGTETVMRILLKKVF 212
                     +  L  +  +    T ++GDT D L     IG +K A   TV   L K+V 
Sbjct: 1101 P------SNQSSLESDSNYPSISTSEIGDTEDALQQVEEIGLEKAAMDMTVFLKLQKRVR 1154

Query: 213  EEKTESEKYRVVLRR 227
            E + E +K +V L +
Sbjct: 1155 ELEQERKKLQVQLEK 1169


>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
          Length = 1087

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 89  RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEE------------LEDDPTVVKNYKDLE 136
           RS   ++K  +  DEE+ +EE  +DE  E+E++            + D+  V   Y+D E
Sbjct: 31  RSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYED-E 89

Query: 137 KAVQSFRYDVVLKTGLDIGR--NKVEDAFYKGELRLNEEKLWKKSRTVKVGD 186
              +    D++ K  ++     N V D    G  RL  + LW+  R  ++G+
Sbjct: 90  DQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRL--QNLWRDQREEELGE 139


>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
          Length = 1087

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 89  RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEE------------LEDDPTVVKNYKDLE 136
           RS   ++K  +  DEE+ +EE  +DE  E+E++            + D+  V   Y+D E
Sbjct: 31  RSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYED-E 89

Query: 137 KAVQSFRYDVVLKTGLDIGR--NKVEDAFYKGELRLNEEKLWKKSRTVKVGD 186
              +    D++ K  ++     N V D    G  RL  + LW+  R  ++G+
Sbjct: 90  DQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRL--QNLWRDQREEELGE 139


>gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]
          Length = 1087

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 17/112 (15%)

Query: 89  RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEE------------LEDDPTVVKNYKDLE 136
           RS   ++K  +  DEE+ +EE  +DE  E+E++            + D+  V   Y+D E
Sbjct: 31  RSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYED-E 89

Query: 137 KAVQSFRYDVVLKTGLDIGR--NKVEDAFYKGELRLNEEKLWKKSRTVKVGD 186
              +    D++ K  ++     N V D    G  RL  + LW+  R  ++G+
Sbjct: 90  DQWEDGAEDILEKEEIEASNIDNVVLDEDRSGARRL--QNLWRDQREEELGE 139


>gi|40254947 thioredoxin-related transmembrane protein 4 [Homo
           sapiens]
          Length = 349

 Score = 35.8 bits (81), Expect = 0.034
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 23/151 (15%)

Query: 39  WNRYLYFSSTKLRAPNYKTLFYNIFSLRLPGLLLS------PECIFP-----FSVRLKSN 87
           W+ + YF+ T L  P + +  + + +  + GL +        EC +       S R + N
Sbjct: 171 WHLHNYFTVT-LGIPAWCSYVFFVIATLVFGLFMGLVLVVISECFYVPLPRHLSERSEQN 229

Query: 88  IRSTKSTK-KSLQKVDEE--DSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRY 144
            RS ++ + + LQ  +EE  DS+EE + D + + EEE ED         D ++A +    
Sbjct: 230 RRSEEAHRAEQLQDAEEEKDDSNEEENKDSLVDDEEEKED-------LGDEDEAEEEEEE 282

Query: 145 DVVLKTGLDIGRNKVEDAFYKGELRLNEEKL 175
           D  L  G+D  R++  D    GE  +  E++
Sbjct: 283 D-NLAAGVDEERSEANDQGPPGEDGVTREEV 312


>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 488

 Score = 34.3 bits (77), Expect = 0.099
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 88  IRSTKSTKKSLQKVDEED-SDEESHHDEMSEQEEELEDD 125
           +++ KS KK  ++ +EED  DEE   DE  E EE+ ED+
Sbjct: 312 VKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDE 350


>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
          Length = 487

 Score = 34.3 bits (77), Expect = 0.099
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 88  IRSTKSTKKSLQKVDEED-SDEESHHDEMSEQEEELEDD 125
           +++ KS KK  ++ +EED  DEE   DE  E EE+ ED+
Sbjct: 312 VKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDE 350


>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
          Length = 1083

 Score = 34.3 bits (77), Expect = 0.099
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 19/111 (17%)

Query: 89  RSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEE------------LEDDPTVVKNYKDLE 136
           RS   ++K  +  DEE+ +EE  +DE  E+E++            + D+  V   Y+D E
Sbjct: 31  RSAAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFILDEADVDDEYED-E 89

Query: 137 KAVQSFRYDVVLK-TGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKVGD 186
              +    D++ K + +D   N V D    G  RL  + LW+  R  ++G+
Sbjct: 90  DQWEDGAEDILEKASNID---NVVLDEDRSGARRL--QNLWRDQREEELGE 135


>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
          Length = 211

 Score = 34.3 bits (77), Expect = 0.099
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 85  KSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELE 123
           K  +++ KS KK  ++ DEED ++E   DE  E++++ E
Sbjct: 173 KGVVKAEKSKKKKEEEEDEEDEEDEEEEDEEDEEDDDDE 211



 Score = 28.1 bits (61), Expect = 7.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 92  KSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDD 125
           ++ KK + K ++    +E   DE  E++EE ED+
Sbjct: 169 EAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEDE 202


>gi|189409130 zinc finger E-box binding homeobox 1 isoform a [Homo
            sapiens]
          Length = 1108

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 103  EEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDA 162
            EED D E   +E  ++ EEL+++    K   D E+  +            ++   +VE+A
Sbjct: 1015 EEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEE----------EEVEEEEVEEA 1064

Query: 163  FYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKEAGTE 201
              +GE     E L K  R      +L   +GE  E  +E
Sbjct: 1065 ENEGE-EAKTEGLMKDDRAESQASSLGQKVGESSEQVSE 1102


>gi|189409128 zinc finger E-box binding homeobox 1 isoform b [Homo
            sapiens]
          Length = 1124

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 103  EEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGRNKVEDA 162
            EED D E   +E  ++ EEL+++    K   D E+  +            ++   +VE+A
Sbjct: 1031 EEDEDSEKEEEEEDKEMEELQEEKECEKPQGDEEEEEEE----------EEVEEEEVEEA 1080

Query: 163  FYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKEAGTE 201
              +GE     E L K  R      +L   +GE  E  +E
Sbjct: 1081 ENEGE-EAKTEGLMKDDRAESQASSLGQKVGESSEQVSE 1118


>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
          Length = 1226

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 85  KSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNY 132
           K+ ++   S+ ++ ++ +EED DE+   D  SE+EEE+E  P   +N+
Sbjct: 266 KTELKEDSSSSEAEEEEEEED-DEKEKEDNSSEEEEEIEPFPEERENF 312


>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
          Length = 1312

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 85  KSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNY 132
           K+ ++   S+ ++ ++ +EED DE+   D  SE+EEE+E  P   +N+
Sbjct: 266 KTELKEDSSSSEAEEEEEEED-DEKEKEDNSSEEEEEIEPFPEERENF 312



 Score = 32.7 bits (73), Expect = 0.29
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 81  SVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDD 125
           S+ +K      K+        +E++ DEE+  +E  E+EEE EDD
Sbjct: 513 SLNIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDD 557



 Score = 31.6 bits (70), Expect = 0.64
 Identities = 12/45 (26%), Positives = 28/45 (62%)

Query: 81  SVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDD 125
           ++++++     KS  ++ ++ DE+D + E   +E  E+E+E +DD
Sbjct: 515 NIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDD 559


>gi|4503257 death-domain associated protein isoform a [Homo sapiens]
          Length = 740

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 97  SLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGR 156
           S  + + +D D+E   +E  E+EEE E++ T  +  +DLE+  +    D       +   
Sbjct: 429 SASRAETDDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAAA 488

Query: 157 NKVEDAFYKGELRLNEEK 174
            K  D      L+++ EK
Sbjct: 489 GKDGDKSPMSSLQISNEK 506


>gi|215422388 death-domain associated protein isoform a [Homo
           sapiens]
          Length = 740

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 97  SLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGR 156
           S  + + +D D+E   +E  E+EEE E++ T  +  +DLE+  +    D       +   
Sbjct: 429 SASRAETDDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAAA 488

Query: 157 NKVEDAFYKGELRLNEEK 174
            K  D      L+++ EK
Sbjct: 489 GKDGDKSPMSSLQISNEK 506


>gi|215422366 death-domain associated protein isoform b [Homo
           sapiens]
          Length = 752

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 97  SLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYDVVLKTGLDIGR 156
           S  + + +D D+E   +E  E+EEE E++ T  +  +DLE+  +    D       +   
Sbjct: 441 SASRAETDDEDDEESDEEEEEEEEEEEEEATDSEEEEDLEQMQEGQEDDEEEDEEEEAAA 500

Query: 157 NKVEDAFYKGELRLNEEK 174
            K  D      L+++ EK
Sbjct: 501 GKDGDKSPMSSLQISNEK 518


>gi|27881484 zinc finger CCCH-type containing 7B [Homo sapiens]
          Length = 977

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 53  PNYKTLFYNIFSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDE--EDSDEES 110
           P+ K     + +L  PG  L P  + P+S      + S  ST+ SL K D   E+++ + 
Sbjct: 327 PSKKLAASVLDALDPPGPTLDPLDLLPYSETRLDALDSFGSTRGSLDKPDSFMEETNSQD 386

Query: 111 HHDEMSEQEEELEDDPTVVKN---YKDLEKAVQSFRYDVVL---KTGLDIG--------R 156
           H      Q+     +P +       K+   A   F+    L   KTG   G         
Sbjct: 387 HRPPSGAQKPAPSPEPCMPNTALLIKNPLAATHEFKQACQLCYPKTGPRAGDYTYREGLE 446

Query: 157 NKVEDAFYKGELRLNEEKLWKKSR 180
           +K +     G LR +E++ WK+ R
Sbjct: 447 HKCKRDILLGRLRSSEDQTWKRIR 470


>gi|50726968 microfibrillar-associated protein 1 [Homo sapiens]
          Length = 439

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 34/165 (20%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 84  LKSNIRSTKSTKKSLQKVDEE-----DSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKA 138
           ++   +  K+ +  + +V++E     +S+ ES ++E ++ E+E+E     V   K     
Sbjct: 152 MRQRAQERKNEEMEVMEVEDEGRSGEESESESEYEEYTDSEDEMEPRLKPVFIRKKDRVT 211

Query: 139 VQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEE----KLWKKSRTVKVGDTLDLLIGE 194
           VQ    + + +  L+    ++ +   K  L++ EE    +L +  R++   D L+     
Sbjct: 212 VQEREAEALKQKELEQEAKRMAEERRKYTLKIVEEETKKELEENKRSLAALDALNTDDEN 271

Query: 195 DKEAGTETVMRIL--LKKVFEEKTESEKYRVVLRRWKSLKLPKKR 237
           D+E      +R L  +K+  E++   EK +  + R ++L   ++R
Sbjct: 272 DEEEYEAWKVRELKRIKRDREDREALEKEKAEIERMRNLTEEERR 316


>gi|42740903 MTERF domain containing 2 [Homo sapiens]
          Length = 381

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 14/45 (31%), Positives = 27/45 (60%)

Query: 90  STKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKD 134
           ST   K++    DE+D DEE + ++ ++++++ EDD     N +D
Sbjct: 330 STSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDED 374


>gi|4758650 kinesin family member 5C [Homo sapiens]
          Length = 957

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 30/132 (22%), Positives = 62/132 (46%), Gaps = 22/132 (16%)

Query: 86  SNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDLEKAVQSFRYD 145
           + ++  +  KK+L++  + +S  E+H  ++S   +E+E+   ++   +DL + +Q  +  
Sbjct: 691 TRLQDAEEMKKALEQ--QMESHREAHQKQLSRLRDEIEEKQKIIDEIRDLNQKLQLEQE- 747

Query: 146 VVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKEAGTETVMR 205
              K   D  + K+ED          +E+  K  + + + D  +    ED +   ETV R
Sbjct: 748 ---KLSSDYNKLKIED----------QEREMKLEKLLLLNDKRE-QAREDLKGLEETVSR 793

Query: 206 IL-----LKKVF 212
            L     L+K+F
Sbjct: 794 ELQTLHNLRKLF 805


>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
          Length = 1976

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 34/164 (20%)

Query: 83   RLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQ-----------EEELE------DD 125
            RLK   ++ +  +K+ +K+D E +D +    E+  Q           EEEL+      DD
Sbjct: 1042 RLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIDELKLQLAKKEEELQGALARGDD 1101

Query: 126  PTVVKN-----YKDLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSR 180
             T+ KN      ++L+  +   + D   +      RNK E    K +  L+EE    ++ 
Sbjct: 1102 ETLHKNNALKVVRELQAQIAELQEDFESEKA---SRNKAE----KQKRDLSEE---LEAL 1151

Query: 181  TVKVGDTLDLLIGEDKEAGTETVMRIL-LKKVFEEKTESEKYRV 223
              ++ DTLD    + +E  T+    +  LKK  EE+T++ + ++
Sbjct: 1152 KTELEDTLDTTAAQ-QELRTKREQEVAELKKALEEETKNHEAQI 1194



 Score = 30.0 bits (66), Expect = 1.9
 Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 34/179 (18%)

Query: 82   VRLKSNIRSTKSTKKSLQKVDEEDSDEESH--------HDEMSEQEEELEDDPTVV---- 129
            + L S IR  +  K SLQ+  EE+ +   +          ++++ +++++DD   +    
Sbjct: 1332 LNLSSRIRQLEEEKNSLQEQQEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGTIESLE 1391

Query: 130  ----KNYKDLEKAVQSFRYDVVLKTGLDIGRNKVE--------DAFYKGELRLNEEKLWK 177
                K  KD E   Q      +    L+  +N+++        D  ++ ++  N EK  K
Sbjct: 1392 EAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLTVDLDHQRQVASNLEKKQK 1451

Query: 178  ---------KSRTVKVGDTLDLLIGEDKEAGTETV-MRILLKKVFEEKTESEKYRVVLR 226
                     KS + +  +  D    E +E  T+ + +   L++  E K E E+    LR
Sbjct: 1452 KFDQLLAEEKSISARYAEERDRAEAEAREKETKALSLARALEEALEAKEEFERQNKQLR 1510


>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
          Length = 2454

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 84   LKSNIRSTKSTKKSLQ-KVDEEDSDE-----ESHHDEMSEQEEELEDDPTVVKNYKDLEK 137
            L+ N RS K  KK  + KV E+ S E     E   +E  E+EEE E++    ++  D  K
Sbjct: 1374 LEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSK 1433

Query: 138  AVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKE 197
            +    R  +      D  R + ++A  + E R       ++ R  K+ + +++      E
Sbjct: 1434 SPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAERERERE-KLREVIEI------E 1486

Query: 198  AGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKL 233
              + T   I  K V +E  E+++  V + R   +KL
Sbjct: 1487 DASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKL 1522



 Score = 29.3 bits (64), Expect = 3.2
 Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 63   FSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEEL 122
            +S++  G   S + +    +R + N+ S ++TK+        D++E S  ++  +Q    
Sbjct: 1077 YSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSS 1136

Query: 123  EDDPTVVKNYK--DLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKL 175
            +    +VK  K   L  + +  + D+   +  DI   + +D    GE   +E+K+
Sbjct: 1137 KKKAVIVKEKKRNSLRTSTKRKQADITSSSSSDI---EDDDQNSIGEGSSDEQKI 1188


>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
          Length = 2492

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 13/156 (8%)

Query: 84   LKSNIRSTKSTKKSLQ-KVDEEDSDE-----ESHHDEMSEQEEELEDDPTVVKNYKDLEK 137
            L+ N RS K  KK  + KV E+ S E     E   +E  E+EEE E++    ++  D  K
Sbjct: 1412 LEENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSK 1471

Query: 138  AVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKLWKKSRTVKVGDTLDLLIGEDKE 197
            +    R  +      D  R + ++A  + E R       ++ R  K+ + +++      E
Sbjct: 1472 SPGKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAERERERE-KLREVIEI------E 1524

Query: 198  AGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKL 233
              + T   I  K V +E  E+++  V + R   +KL
Sbjct: 1525 DASPTKCPITTKLVLDEDEETKEPLVQVHRNMVIKL 1560



 Score = 29.3 bits (64), Expect = 3.2
 Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 63   FSLRLPGLLLSPECIFPFSVRLKSNIRSTKSTKKSLQKVDEEDSDEESHHDEMSEQEEEL 122
            +S++  G   S + +    +R + N+ S ++TK+        D++E S  ++  +Q    
Sbjct: 1115 YSMKEDGCNSSDKRLKRIELRERRNLSSKRNTKEIQSGSSSSDAEESSEDNKKKKQRTSS 1174

Query: 123  EDDPTVVKNYK--DLEKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGELRLNEEKL 175
            +    +VK  K   L  + +  + D+   +  DI   + +D    GE   +E+K+
Sbjct: 1175 KKKAVIVKEKKRNSLRTSTKRKQADITSSSSSDI---EDDDQNSIGEGSSDEQKI 1226


>gi|219521893 coiled-coil transcriptional coactivator isoform 2
           [Homo sapiens]
          Length = 606

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 19/171 (11%)

Query: 83  RLKSNIRS-TKSTKKSLQKVDEEDSDEESHHDEMSEQEEELEDDPTVVKNYKDL------ 135
           RL+  +++ T+  +K L ++ E  +D+E    E+   +E+L     +  + +        
Sbjct: 220 RLRDTVKALTREQEKLLGQLKEVQADKEQSEAELEPLKEQLRGAQELAASSQQKATLLGE 279

Query: 136 EKAVQSFRYDVVLKTGLDIGRNKVEDAFYKGE-----LRLNEEKL-WKKSRTVKVGDTLD 189
           E A  +   D   +T  ++ R+++E A   G      L L EEK  W K R    G    
Sbjct: 280 ELASAAAARD---RTIAELHRSRLEVAEVNGRLAELGLHLKEEKCQWSKER---AGLLQS 333

Query: 190 LLIGEDKEAGTETVMRILLKKVFEEKTESEKYRVVLRRWKSLKLPKKRMSK 240
           +   +DK       +  L K V EE+T+++ ++  L R K   L +   SK
Sbjct: 334 VEAEKDKILKLSAEILRLEKAVQEERTQNQVFKTELAREKDSSLVQLSESK 384


>gi|6912398 general transcription factor IIIC, polypeptide 3, 102kDa
           [Homo sapiens]
          Length = 886

 Score = 33.1 bits (74), Expect = 0.22
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 19/83 (22%)

Query: 64  SLRLPGLLLSPECIFPFSVRLKSNIRSTKS-------------TKKSLQKV------DEE 104
           SL+  G L + E      V   S I STKS              +KS+ KV      + E
Sbjct: 35  SLQEKGKLSAEENPDDSEVPSSSGINSTKSQDKDVNEGETSDGVRKSVHKVFASMLGENE 94

Query: 105 DSDEESHHDEMSEQEEELEDDPT 127
           D +EE   +E  E+EEE  + PT
Sbjct: 95  DDEEEEEEEEEEEEEEETPEQPT 117


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,917,653
Number of Sequences: 37866
Number of extensions: 396129
Number of successful extensions: 6325
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 4342
Number of HSP's gapped (non-prelim): 1405
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press