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Search of human proteins with 21389443
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21389443 transmembrane protein 125 [Homo sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21389443 transmembrane protein 125 [Homo sapiens] 426 e-119
gi|124107616 claudin 23 [Homo sapiens] 34 0.11
gi|49355757 SFT2 domain containing 3 [Homo sapiens] 33 0.14
gi|122937281 solute carrier family 38, member 8 [Homo sapiens] 33 0.14
gi|23308585 G protein-coupled receptor 156 [Homo sapiens] 32 0.32
gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo sapi... 31 0.72
gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens] 31 0.72
gi|40385873 G protein-coupled receptor 150 [Homo sapiens] 31 0.94
gi|50080193 olfactory receptor, family 10, subfamily G, member 9... 30 1.2
gi|11141861 claudin 9 [Homo sapiens] 30 1.6
gi|239750800 PREDICTED: hypothetical protein XP_002347563 [Homo ... 30 1.6
gi|52218840 olfactory receptor, family 10, subfamily G, member 8... 30 2.1
gi|149773484 leucine rich repeat and fibronectin type III domain... 29 2.7
gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo sap... 29 2.7
gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo sapi... 29 2.7
gi|52138725 leucine rich repeat and Ig domain containing 4 [Homo... 29 2.7
gi|9256602 protocadherin beta 10 precursor [Homo sapiens] 29 2.7
gi|52218830 olfactory receptor, family 10, subfamily G, member 7... 29 2.7
gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo ... 29 3.6
gi|148728191 solute carrier family 17 (sodium phosphate), member... 29 3.6
gi|168229226 hypothetical protein LOC401399 [Homo sapiens] 29 3.6
gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo sap... 29 3.6
gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo sapi... 29 3.6
gi|14195616 protocadherin beta 9 precursor [Homo sapiens] 29 3.6
gi|169209448 PREDICTED: hypothetical protein [Homo sapiens] 28 4.7
gi|169210523 PREDICTED: hypothetical protein [Homo sapiens] 28 4.7
gi|169210084 PREDICTED: hypothetical protein [Homo sapiens] 28 4.7
gi|118918405 SAC3 domain containing 1 [Homo sapiens] 28 4.7
gi|56788377 nucleoporin like 1 isoform b [Homo sapiens] 28 4.7
gi|30102928 nucleoporin like 1 isoform a [Homo sapiens] 28 4.7
>gi|21389443 transmembrane protein 125 [Homo sapiens]
Length = 219
Score = 426 bits (1094), Expect = e-119
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MSEQEAQAPGGRGLPPDMLAEQVELWWSQQPRRSALCFVVAVGLVAGCGAGGVALLSTTS 60
MSEQEAQAPGGRGLPPDMLAEQVELWWSQQPRRSALCFVVAVGLVAGCGAGGVALLSTTS
Sbjct: 1 MSEQEAQAPGGRGLPPDMLAEQVELWWSQQPRRSALCFVVAVGLVAGCGAGGVALLSTTS 60
Query: 61 SRSGEWRLATGTVLCLLALLVLVKQLMSSAVQDMNCIRQAHHVALLRSGGGADALVVLLS 120
SRSGEWRLATGTVLCLLALLVLVKQLMSSAVQDMNCIRQAHHVALLRSGGGADALVVLLS
Sbjct: 61 SRSGEWRLATGTVLCLLALLVLVKQLMSSAVQDMNCIRQAHHVALLRSGGGADALVVLLS 120
Query: 121 GLVLLVTGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGVSGHCPSIC 180
GLVLLVTGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGVSGHCPSIC
Sbjct: 121 GLVLLVTGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGVSGHCPSIC 180
Query: 181 MATPSTHSGHGGHGSIFSISGQLSAGRRHETTSSIASLI 219
MATPSTHSGHGGHGSIFSISGQLSAGRRHETTSSIASLI
Sbjct: 181 MATPSTHSGHGGHGSIFSISGQLSAGRRHETTSSIASLI 219
>gi|124107616 claudin 23 [Homo sapiens]
Length = 292
Score = 33.9 bits (76), Expect = 0.11
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 12/74 (16%)
Query: 119 LSGLVLLVTGLT-----------LAGLAAAPAPARPLAAMLSVGIALAALGS-LLLLGLL 166
LSG+VL V GL L PAPA P+ +S + L LGS LLLLG
Sbjct: 116 LSGVVLFVAGLLGLIPVSWYNHFLGDRDVLPAPASPVTVQVSYSLVLGYLGSCLLLLGGF 175
Query: 167 LYQVGVSGHCPSIC 180
+ + C C
Sbjct: 176 SLALSFAPWCDERC 189
>gi|49355757 SFT2 domain containing 3 [Homo sapiens]
Length = 215
Score = 33.5 bits (75), Expect = 0.14
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 89 SAVQDMNCIRQAHHVALLRSGGGADALVVLLSGLVLLVTGLTLAGLAAAPAPARPLAAML 148
SA + C+ L +GGG L L GL L + L AR A +
Sbjct: 60 SAAAGLTCLPSVTRGQRLAAGGGCLLLAALCFGLAALYAPVLLLR-------ARKFALLW 112
Query: 149 SVGIALAALGSLLLLG 164
S+G ALA GS LL G
Sbjct: 113 SLGSALALAGSALLRG 128
>gi|122937281 solute carrier family 38, member 8 [Homo sapiens]
Length = 435
Score = 33.5 bits (75), Expect = 0.14
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 69 ATGTVLCLLALLVLVKQLMSSAVQDMNCIRQAHHVALLRSGGGADALVVLLSGLVLLVTG 128
A T+ + A+ +L+K + + + + A ++GG A +V L LV L++G
Sbjct: 20 AAATLSSMGAVFILMKSALGAGLLNFPW-------AFSKAGGVVPAFLVELVSLVFLISG 72
Query: 129 LTLAGLAAAPAPARPLAAMLSVGIALAALGSL----LLLGLLLYQVG--------VSGHC 176
L + G AAA + ++ G+ A+G L LL LL+ V + C
Sbjct: 73 LVILGYAAAVSGQATYQGVVR-GLCGPAIGKLCEACFLLNLLMISVAFLRVIGDQLEKLC 131
Query: 177 PSICMATP 184
S+ TP
Sbjct: 132 DSLLSGTP 139
>gi|23308585 G protein-coupled receptor 156 [Homo sapiens]
Length = 814
Score = 32.3 bits (72), Expect = 0.32
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 42 VGLVAGCGAGGVALLSTTSSRSGEWRLATGTVLCLLALLVLVKQLMSSAVQDMNCIRQAH 101
+GLVA V LL T W L T + CL L V M+ +D++C +
Sbjct: 166 LGLVAALLMADVILLMT-------WVL-TDPIQCLQILSVS----MTVTGKDVSCTSTST 213
Query: 102 HVALLRSGGGADALVVLLSGLVLLVTGLTLAGL---AAAPAPARPLAAMLSVGIALAALG 158
H R AL+ GL+LL G LAGL ++P + L M+ V + + A G
Sbjct: 214 HFCASRYSDVWIALIWGCKGLLLLY-GAYLAGLTGHVSSPPVNQSLTIMVGVNLLVLAAG 272
Query: 159 SLLLLGLLLY 168
L ++ L+
Sbjct: 273 LLFVVTRYLH 282
>gi|14165390 protocadherin alpha 6 isoform 2 precursor [Homo
sapiens]
Length = 803
Score = 31.2 bits (69), Expect = 0.72
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 101 HHVALLRSGGGADALVVLLSGLVLLVTG--LTLAGLAAAPAPARPLAAMLSVG----IAL 154
H + +L G AL + LV LV A A+ A P AA++ V IA+
Sbjct: 645 HRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAI 704
Query: 155 AALGSLLLLGLLLY 168
A+ SLL+L LLLY
Sbjct: 705 CAVSSLLVLTLLLY 718
>gi|9256592 protocadherin alpha 6 isoform 1 precursor [Homo sapiens]
Length = 950
Score = 31.2 bits (69), Expect = 0.72
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 101 HHVALLRSGGGADALVVLLSGLVLLVTG--LTLAGLAAAPAPARPLAAMLSVG----IAL 154
H + +L G AL + LV LV A A+ A P AA++ V IA+
Sbjct: 645 HRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRASVGAAGPEAALVDVNVYLIIAI 704
Query: 155 AALGSLLLLGLLLY 168
A+ SLL+L LLLY
Sbjct: 705 CAVSSLLVLTLLLY 718
>gi|40385873 G protein-coupled receptor 150 [Homo sapiens]
Length = 434
Score = 30.8 bits (68), Expect = 0.94
Identities = 36/137 (26%), Positives = 50/137 (36%), Gaps = 9/137 (6%)
Query: 27 WSQQPRRSALCFVVAVGLVAGCGAGGVALLSTTSSRSGEWRLATGTVLCLLALLVLVKQL 86
W+ RR +V + L GG AL GE R ATG + C L+
Sbjct: 74 WAGPKRRKMDFLLVQLALADLYACGGTALSQLAWELLGEPRAATGDLACRFLQLLQASGR 133
Query: 87 MSS-------AVQDMNCIRQAHHVALLRSGGGADALVVLLSGLVLLVTGLTLAGLAAAPA 139
+S A++ +R H L AL LL+ L+ L + G + +P
Sbjct: 134 GASAHLVVLIALERRRAVRLPHGRPL--PARALAALGWLLALLLALPPAFVVRGDSPSPL 191
Query: 140 PARPLAAMLSVGIALAA 156
P P L G AA
Sbjct: 192 PPPPPPTSLQPGAPPAA 208
>gi|50080193 olfactory receptor, family 10, subfamily G, member 9
[Homo sapiens]
Length = 311
Score = 30.4 bits (67), Expect = 1.2
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 125 LVTGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGVSGHCP 177
LVT L GL AP PL + V L LG+LL+ LL+ +V H P
Sbjct: 6 LVTAFILTGLPHAPGLDAPLFGIFLVVYVLTVLGNLLI--LLVIRVDSHLHTP 56
>gi|11141861 claudin 9 [Homo sapiens]
Length = 217
Score = 30.0 bits (66), Expect = 1.6
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 29/117 (24%)
Query: 68 LATGTVLCLLALLVLVKQLMSS--AVQDMNCIRQAHHVALLRSGGGADALVVLLSGLVLL 125
L LC++ALL+ + L+ + Q C+ GA A +VL +G++LL
Sbjct: 77 LQAARALCVIALLLALLGLLVAITGAQCTTCVEDE----------GAKARIVLTAGVILL 126
Query: 126 VTGLTLA---------------GLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLL 167
+ G+ + A A R L A L +G A AAL L+L G LL
Sbjct: 127 LAGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAAL--LMLGGGLL 181
>gi|239750800 PREDICTED: hypothetical protein XP_002347563 [Homo
sapiens]
Length = 596
Score = 30.0 bits (66), Expect = 1.6
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 1 MSEQEAQAPGGRGLPPDMLAEQVELWWSQQPRRSALCFV-------VAVGLVAGCGAGGV 53
++ A +PG LP D+ A W QP S + V VAV +G G
Sbjct: 442 LTSNAAHSPGDPQLPSDLAAH----WAFPQPLVSVMFAVKLDQGSGVAVQKDSGWNLTGS 497
Query: 54 ALLSTTSSRSGEWRLATGTVLC 75
A S T++ S W +TG+ C
Sbjct: 498 APQSGTTTLSQSWMASTGSSPC 519
>gi|52218840 olfactory receptor, family 10, subfamily G, member 8
[Homo sapiens]
Length = 311
Score = 29.6 bits (65), Expect = 2.1
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 125 LVTGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLL 163
L+T L GL APA PL + V L LG+LL+L
Sbjct: 6 LLTAFILMGLPHAPALDAPLFGVFLVVYVLTVLGNLLIL 44
>gi|149773484 leucine rich repeat and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 771
Score = 29.3 bits (64), Expect = 2.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 126 VTGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQV 170
V G A PAP RPL A G + A+G +++ +L++ V
Sbjct: 509 VVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAIGGVIVASVLVFIV 553
>gi|14165387 protocadherin alpha 11 isoform 2 precursor [Homo
sapiens]
Length = 810
Score = 29.3 bits (64), Expect = 2.7
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 101 HHVALLRSGGGADALVVLLSGLVLLV--------TGLTLAGLAAAPAPARPLAAMLSVG- 151
H + +L G AL + LV LV + TLAG A+ P AA++ V
Sbjct: 644 HRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRTLAGAAS------PEAALVDVNV 697
Query: 152 ---IALAALGSLLLLGLLLY 168
IA+ + SLL+L LLLY
Sbjct: 698 YLIIAICVVSSLLVLTLLLY 717
>gi|9256576 protocadherin alpha 11 isoform 1 precursor [Homo
sapiens]
Length = 949
Score = 29.3 bits (64), Expect = 2.7
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 18/80 (22%)
Query: 101 HHVALLRSGGGADALVVLLSGLVLLV--------TGLTLAGLAAAPAPARPLAAMLSVG- 151
H + +L G AL + LV LV + TLAG A+ P AA++ V
Sbjct: 644 HRLLVLVKDHGEPALTATATVLVSLVESGQAPKASSRTLAGAAS------PEAALVDVNV 697
Query: 152 ---IALAALGSLLLLGLLLY 168
IA+ + SLL+L LLLY
Sbjct: 698 YLIIAICVVSSLLVLTLLLY 717
>gi|52138725 leucine rich repeat and Ig domain containing 4 [Homo
sapiens]
Length = 593
Score = 29.3 bits (64), Expect = 2.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 162 LLGLLLYQVGVSGHCPSICMATPSTHSGHGGHGSIFSISGQL 203
LL LLL G G CP++C T + GH + ++ G L
Sbjct: 17 LLFLLLLPGGSGGSCPAVCDCTSQPQAVLCGHRQLEAVPGGL 58
>gi|9256602 protocadherin beta 10 precursor [Homo sapiens]
Length = 800
Score = 29.3 bits (64), Expect = 2.7
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 101 HHVALLRSGGGADALVVLLSGLVLLVTGLTLAGLA---AAPAPARPLAAMLSVG--IALA 155
H + +L G + +LLV G + L AAPA A+ A +L+V +ALA
Sbjct: 638 HRLVVLVKDNGEPPRSATATLHLLLVDGFSQPYLPLPEAAPAQAQAEADLLTVYLVVALA 697
Query: 156 ALGSLLLLGLLLY 168
++ SL LL +LL+
Sbjct: 698 SVSSLFLLSVLLF 710
>gi|52218830 olfactory receptor, family 10, subfamily G, member 7
[Homo sapiens]
Length = 311
Score = 29.3 bits (64), Expect = 2.7
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 125 LVTGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGVSGHCP 177
L+T L GL AP PL + V L LG+LL+ LL+ +V H P
Sbjct: 6 LLTAFILTGLPHAPGLDAPLFGIFLVVYVLTVLGNLLI--LLVIRVDSHLHTP 56
>gi|239750593 PREDICTED: hypothetical protein XP_002347442 [Homo
sapiens]
Length = 135
Score = 28.9 bits (63), Expect = 3.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 157 LGSLLLLGLLLYQVG-----------VSGHCPSICMATPSTHSGHGGHGSIFSISG 201
+GSLLL+ +L+ VG V G+ P I ++ P G G G ++SG
Sbjct: 29 VGSLLLVSVLIVTVGLAATTRTENVTVGGYYPGIIVSAPGGRPGPGRAGWCVALSG 84
>gi|148728191 solute carrier family 17 (sodium phosphate), member 3
isoform b [Homo sapiens]
Length = 420
Score = 28.9 bits (63), Expect = 3.6
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 6 AQAPGGRGLPPDMLAEQVELW--WSQQPRRSALCFVVAVGLVAGCGAGGVALLSTTSSRS 63
++AP +L Q +W W RS LC + G++ GC L+ S +
Sbjct: 92 SKAPKSLPAKSSILGGQFAIWEKWGPPQERSRLCSIALSGMLLGCFT--AILIGGFISET 149
Query: 64 GEWRL------ATGTVLCLLALLVL 82
W G V CLL +V+
Sbjct: 150 LGWPFVFYIFGGVGCVCCLLWFVVI 174
>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
Length = 899
Score = 28.9 bits (63), Expect = 3.6
Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 1 MSEQEAQAPGGRGLPPDMLAEQVELWWSQQPRRSALCFVVAVGLVAGCGA--GGVALLST 58
+ E+E Q P P + +E W++ R L + V G GA G VALL+
Sbjct: 329 LPEREGQPPEA---PRPLFFLTLEADWAEARARWGLAWEAHV---YGVGALFGLVALLAL 382
Query: 59 TSSRSGEWRLATGTVLCLLALLVLVKQLMSSAVQDMNCIRQAHHVALLRSGGGADALV-V 117
+ WR G CL L +L+ ++ + H L AL +
Sbjct: 383 LALALLPWRCPPGAP-CLALLDLLLLSAGTTRAFPLFYDAYGHRDRL-------PALAWL 434
Query: 118 LLSGLVL--LVTGLTLAGLAAA-PAPAR---PLAAMLSVGIALAALGSL 160
LL L L L GL LA L A P P R LAA+L +G+ LAA +L
Sbjct: 435 LLQDLPLPCLAAGLGLACLLLARPRPPRCPTGLAALLLLGLGLAAAAAL 483
>gi|14165397 protocadherin alpha 13 isoform 2 precursor [Homo
sapiens]
Length = 807
Score = 28.9 bits (63), Expect = 3.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 101 HHVALLRSGGGADALVVLLSGLVLLVTG--LTLAGLAAAPAPARPLAAMLSVG----IAL 154
H + +L G AL + L+ LV A A+ P AA++ V IA+
Sbjct: 645 HRLLVLVKDHGEPALTATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAI 704
Query: 155 AALGSLLLLGLLLY 168
A+ SLL+L LLLY
Sbjct: 705 CAVSSLLVLTLLLY 718
>gi|9256580 protocadherin alpha 13 isoform 1 precursor [Homo
sapiens]
Length = 950
Score = 28.9 bits (63), Expect = 3.6
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 101 HHVALLRSGGGADALVVLLSGLVLLVTG--LTLAGLAAAPAPARPLAAMLSVG----IAL 154
H + +L G AL + L+ LV A A+ P AA++ V IA+
Sbjct: 645 HRLLVLVKDHGEPALTATATVLLSLVESGQAPQASSRASAGAVGPEAALVDVNVYLIIAI 704
Query: 155 AALGSLLLLGLLLY 168
A+ SLL+L LLLY
Sbjct: 705 CAVSSLLVLTLLLY 718
>gi|14195616 protocadherin beta 9 precursor [Homo sapiens]
Length = 797
Score = 28.9 bits (63), Expect = 3.6
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 101 HHVALLRSGGGADALVVLLSGLVLLVTGLTLAGLA---AAPAPARPLAAMLSVGIALAAL 157
H + +L G + VLLV G + L AAPA A+ + + +ALA++
Sbjct: 638 HRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASV 697
Query: 158 GSLLLLGLLLY 168
SL LL +LL+
Sbjct: 698 SSLFLLSVLLF 708
>gi|169209448 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 28.5 bits (62), Expect = 4.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 74 LCLLALLVLVKQLMSSAVQDMNCIRQAH--HVALLRSGGGAD 113
+CL LLVL+ + A++ + + + H HVA R+GG D
Sbjct: 142 VCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGGAQD 183
>gi|169210523 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 28.5 bits (62), Expect = 4.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 74 LCLLALLVLVKQLMSSAVQDMNCIRQAH--HVALLRSGGGAD 113
+CL LLVL+ + A++ + + + H HVA R+GG D
Sbjct: 142 VCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGGAQD 183
>gi|169210084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 28.5 bits (62), Expect = 4.7
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 74 LCLLALLVLVKQLMSSAVQDMNCIRQAH--HVALLRSGGGAD 113
+CL LLVL+ + A++ + + + H HVA R+GG D
Sbjct: 142 VCLQGLLVLIVPVALGALECLTRVTRMHHGHVAAQRAGGAQD 183
>gi|118918405 SAC3 domain containing 1 [Homo sapiens]
Length = 358
Score = 28.5 bits (62), Expect = 4.7
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 106 LRSGGGADALVVLLSGLVLLVTGLTLAGLAAAPAPARPLAAMLSV 150
L+ G A+A VVL + L L+T + G AA PA P+ V
Sbjct: 114 LQGAGDAEAAVVLEAALATLLTVVARLGPDAARGPADPVLLQAQV 158
>gi|56788377 nucleoporin like 1 isoform b [Homo sapiens]
Length = 587
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/68 (29%), Positives = 27/68 (39%)
Query: 127 TGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGVSGHCPSICMATPST 186
TG TL L A + LS+G ALA LG L G+ + + + T +
Sbjct: 136 TGFTLNNLGGTTATTTTASTGLSLGGALAGLGGSLFQSTNTGTSGLGQNALGLTLGTTAA 195
Query: 187 HSGHGGHG 194
S G G
Sbjct: 196 TSTAGNEG 203
>gi|30102928 nucleoporin like 1 isoform a [Homo sapiens]
Length = 599
Score = 28.5 bits (62), Expect = 4.7
Identities = 20/68 (29%), Positives = 27/68 (39%)
Query: 127 TGLTLAGLAAAPAPARPLAAMLSVGIALAALGSLLLLGLLLYQVGVSGHCPSICMATPST 186
TG TL L A + LS+G ALA LG L G+ + + + T +
Sbjct: 148 TGFTLNNLGGTTATTTTASTGLSLGGALAGLGGSLFQSTNTGTSGLGQNALGLTLGTTAA 207
Query: 187 HSGHGGHG 194
S G G
Sbjct: 208 TSTAGNEG 215
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,298,790
Number of Sequences: 37866
Number of extensions: 349895
Number of successful extensions: 1291
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 67
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.