Guide to the Human Genome
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Name: SFT2D3 Sequence: fasta or formatted (215aa) NCBI GI: 49355757
Description:

SFT2 domain containing 3

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            22.3         48           3
 C cysteine            2.3          5           1
 D aspartate           0.9          2           1
 E glutamate           4.7         10           2
 F phenylalanine       1.4          3           1
 G glycine            13.5         29           3
 H histidine           0.5          1           1
 I isoleucine          0.0          0           0
 K lysine              1.9          4           1
 L leucine            22.3         48           3
 M methionine          0.9          2           1
 N asparagine          0.0          0           0
 P proline             5.1         11           1
 Q glutamine           2.3          5           1
 R arginine            7.9         17           1
 S serine              3.7          8           1
 T threonine           3.3          7           1
 V valine              3.3          7           1
 W tryptophan          2.3          5           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SFT2 domain containing 3 
SLC12A9               0.025   solute carrier family 12 (potassium/chloride transpo...
TMEM125               0.020   transmembrane protein 125 
LOC100291828          0.018   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.018   PREDICTED: hypothetical protein XP_002343509 
LOC646509             0.015   PREDICTED: hypothetical protein 
ROM1                  0.015   retinal outer segment membrane protein 1 
CT47A1                0.013   cancer/testis antigen family 47, member A1 
CT47A2                0.013   cancer/testis antigen family 47, member A2 
CT47A3                0.013   cancer/testis antigen family 47, member A3 
CT47A4                0.013   cancer/testis antigen family 47, member A4 
CT47A5                0.013   cancer/testis antigen family 47, member A5 
CT47A6                0.013   cancer/testis antigen family 47, member A6 
CT47A7                0.013   cancer/testis antigen family 47, member A7 
CT47A8                0.013   cancer/testis antigen family 47, member A8 
CT47A9                0.013   cancer/testis antigen family 47, member A9 
CT47A10               0.013   cancer/testis antigen family 47, member A10 
LOC100291781          0.013   PREDICTED: hypothetical protein XP_002344871 
LOC100130667          0.013   PREDICTED: hypothetical protein 
LOC100290673          0.013   PREDICTED: hypothetical protein XP_002347567 
LOC100130667          0.013   PREDICTED: hypothetical protein 
LOC100286890          0.013   PREDICTED: hypothetical protein XP_002343388 
LOC100130667          0.013   PREDICTED: hypothetical protein 
CT47A11               0.013   cancer/testis antigen family 47, member A11 
RCCD1                 0.013   RCC1 domain containing 1 
RCCD1                 0.013   RCC1 domain containing 1 
DISP2                 0.013   dispatched B 
LOC100131774          0.013   PREDICTED: hypothetical protein 
ZXDB                  0.013   zinc finger, X-linked, duplicated B 
IL17RE                0.013   interleukin 17 receptor E isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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