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Search of human proteins with 21389403
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21389403 folliculin isoform 2 [Homo sapiens]
(342 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21389403 folliculin isoform 2 [Homo sapiens] 718 0.0
gi|22907034 folliculin isoform 1 [Homo sapiens] 604 e-173
gi|8923582 zinc finger protein 446 [Homo sapiens] 34 0.17
gi|167736355 mucin 4 isoform a [Homo sapiens] 32 0.63
gi|112382231 mucin 4 isoform e [Homo sapiens] 32 0.63
gi|112382233 mucin 4 isoform d [Homo sapiens] 32 0.63
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 32 1.1
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 32 1.1
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 32 1.1
gi|156139147 leucine rich repeat transmembrane neuronal 4 isofor... 32 1.1
gi|197927168 leucine rich repeat transmembrane neuronal 4 isofor... 32 1.1
gi|61743930 zinc finger and BTB domain containing 41 [Homo sapiens] 32 1.1
gi|111548650 family with sequence similarity 170, member A [Homo... 31 1.8
gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens] 31 1.8
gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens] 31 1.8
gi|101943240 general transcription factor IIIC, polypeptide 1, a... 30 2.4
gi|197383784 zinc finger protein 213 [Homo sapiens] 30 2.4
gi|32698678 zinc finger protein 213 [Homo sapiens] 30 2.4
gi|5730081 T-box, brain, 1 [Homo sapiens] 30 2.4
gi|194097341 period 1 [Homo sapiens] 30 4.1
gi|58218970 protease, serine, 36 [Homo sapiens] 30 4.1
gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo ... 29 5.3
gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo s... 29 5.3
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 29 5.3
gi|20070191 thymic dendritic cell-derived factor 1 [Homo sapiens] 29 5.3
gi|222136585 timeless homolog [Homo sapiens] 29 7.0
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 29 7.0
gi|50659084 suppressor of variegation 4-20 homolog 1 isoform 2 [... 29 7.0
gi|50659082 suppressor of variegation 4-20 homolog 1 isoform 1 [... 29 7.0
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 29 7.0
>gi|21389403 folliculin isoform 2 [Homo sapiens]
Length = 342
Score = 718 bits (1853), Expect = 0.0
Identities = 342/342 (100%), Positives = 342/342 (100%)
Query: 1 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA 60
MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA
Sbjct: 1 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA 60
Query: 61 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI 120
HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI
Sbjct: 61 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI 120
Query: 121 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI 180
VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI
Sbjct: 121 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI 180
Query: 181 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS 240
YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS
Sbjct: 181 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS 240
Query: 241 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLAGEAGVLLPGP 300
LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLAGEAGVLLPGP
Sbjct: 241 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLAGEAGVLLPGP 300
Query: 301 WPGWPWGGTSCLLSWQESLREGNAALNQPRTSLREAHPPISV 342
WPGWPWGGTSCLLSWQESLREGNAALNQPRTSLREAHPPISV
Sbjct: 301 WPGWPWGGTSCLLSWQESLREGNAALNQPRTSLREAHPPISV 342
>gi|22907034 folliculin isoform 1 [Homo sapiens]
Length = 579
Score = 604 bits (1558), Expect = e-173
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA 60
MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA
Sbjct: 1 MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRA 60
Query: 61 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI 120
HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI
Sbjct: 61 HSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSI 120
Query: 121 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI 180
VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI
Sbjct: 121 VRQACVRSLSCEVCPGREGPIFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIITIMMDRI 180
Query: 181 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS 240
YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS
Sbjct: 181 YLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQRNGNAARS 240
Query: 241 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLA 290
LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLA
Sbjct: 241 LTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLA 290
>gi|8923582 zinc finger protein 446 [Homo sapiens]
Length = 450
Score = 34.3 bits (77), Expect = 0.17
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 30 PQGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSP 74
P G +SPG+G Q EG +Q++ ++ +G V SSP
Sbjct: 138 PHPSGTVESPGEGPQDTRIEGSVQLSCSVKEEPNVDGQEVAPSSP 182
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 32.3 bits (72), Expect = 0.63
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 301 WPGWPWGGTSCLLSWQESLRE 321
WP W W SC SWQ+ R+
Sbjct: 4443 WPSWGWNQVSCPCSWQQGRRD 4463
>gi|112382231 mucin 4 isoform e [Homo sapiens]
Length = 1125
Score = 32.3 bits (72), Expect = 0.63
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 301 WPGWPWGGTSCLLSWQESLRE 321
WP W W SC SWQ+ R+
Sbjct: 284 WPSWGWNQVSCPCSWQQGRRD 304
>gi|112382233 mucin 4 isoform d [Homo sapiens]
Length = 1176
Score = 32.3 bits (72), Expect = 0.63
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 301 WPGWPWGGTSCLLSWQESLRE 321
WP W W SC SWQ+ R+
Sbjct: 335 WPSWGWNQVSCPCSWQQGRRD 355
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 27 APLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSPGPKKS 79
+P P D + DS GE+ EEEEG + G+S P P +S
Sbjct: 511 SPAPSPDSDSDSDSDGEEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPRS 563
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 27 APLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSPGPKKS 79
+P P D + DS GE+ EEEEG + G+S P P +S
Sbjct: 511 SPAPSPDSDSDSDSDGEEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPRS 563
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 27 APLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSPGPKKS 79
+P P D + DS GE+ EEEEG + G+S P P +S
Sbjct: 511 SPAPSPDSDSDSDSDGEEEEEEEGERDETPSGAIDTRDTGSSEPQPPPEPPRS 563
>gi|156139147 leucine rich repeat transmembrane neuronal 4 isoform b
[Homo sapiens]
Length = 518
Score = 31.6 bits (70), Expect = 1.1
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 199 ELQGKALKVFEAEQFGCPQRAQRMNTAFTPF--LHQRNGNAARSLTSLTSDDNLWACLHT 256
+L G ++ E F C Q++N + Q NA SL S+T N+W C +
Sbjct: 259 DLSGNDIQGIEPGTFKCLPNLQKLNLDSNKLTNISQETVNAWISLISITLSGNMWECSRS 318
Query: 257 ---SFAWLLKACGSRLTEKLLEG 276
F WL G++ + + G
Sbjct: 319 ICPLFYWLKNFKGNKESTMICAG 341
>gi|197927168 leucine rich repeat transmembrane neuronal 4 isoform a
[Homo sapiens]
Length = 590
Score = 31.6 bits (70), Expect = 1.1
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 199 ELQGKALKVFEAEQFGCPQRAQRMNTAFTPF--LHQRNGNAARSLTSLTSDDNLWACLHT 256
+L G ++ E F C Q++N + Q NA SL S+T N+W C +
Sbjct: 259 DLSGNDIQGIEPGTFKCLPNLQKLNLDSNKLTNISQETVNAWISLISITLSGNMWECSRS 318
Query: 257 ---SFAWLLKACGSRLTEKLLEG 276
F WL G++ + + G
Sbjct: 319 ICPLFYWLKNFKGNKESTMICAG 341
>gi|61743930 zinc finger and BTB domain containing 41 [Homo sapiens]
Length = 909
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 77 KKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSIVRQACVRSLSCEVC 134
KK C C L A K+T K+V HP + Q F +++ S C++C
Sbjct: 419 KKEHKCPYCNKLHAS--------KKTLAKHVKRFHPENAQEFISIKKTKSESWKCDIC 468
>gi|111548650 family with sequence similarity 170, member A [Homo
sapiens]
Length = 329
Score = 30.8 bits (68), Expect = 1.8
Identities = 19/71 (26%), Positives = 25/71 (35%)
Query: 15 GPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSP 74
G R F V H + Q GN +S ++ EEE G + EG E
Sbjct: 250 GIREGFSCHVFHLTMAQLTGNMESESTQDEQEEENGNEKEEEEKPEAKEEEGQPTEEDLG 309
Query: 75 GPKKSDMCEGC 85
+ C GC
Sbjct: 310 LRRSWSQCPGC 320
>gi|13994253 Golgi reassembly stacking protein 1 [Homo sapiens]
Length = 440
Score = 30.8 bits (68), Expect = 1.8
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 14/77 (18%)
Query: 29 LPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSPGPKKSDMCEGCRSL 88
LP G EDSP E G + + M A A G+S+E PGP G S
Sbjct: 232 LPPGPTPEDSPSL-------ETGSRQSDYMEALLQAPGSSMEDPLPGP-------GSPSH 277
Query: 89 AAGHPGYISHDKETSIK 105
+A P + H ET ++
Sbjct: 278 SAPDPDGLPHFMETPLQ 294
>gi|142976638 sine oculis homeobox homolog 4 [Homo sapiens]
Length = 781
Score = 30.8 bits (68), Expect = 1.8
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 55 NSRMRAHSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKETSIKYVSHQHPSH 114
N R R +P+E S S P D + HP S D T++ SH P +
Sbjct: 273 NRRQRDRNPSETQSKSESDGNPSTEDESSKGHEDLSPHPLSSSSDGITNLSLSSHMEPVY 332
Query: 115 PQLFSIVRQACVRS---LSCEVCPGREGPIF 142
Q + + S L+ + P P+F
Sbjct: 333 MQQIGNAKISLSSSGVLLNGSLVPASTSPVF 363
>gi|101943240 general transcription factor IIIC, polypeptide 1,
alpha 220kDa [Homo sapiens]
Length = 2109
Score = 30.4 bits (67), Expect = 2.4
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 13/66 (19%)
Query: 28 PLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSPGPKKSDMCEGCRS 87
P+PQG+ EDS QG++ G Q++ AS S S KKSD G
Sbjct: 729 PVPQGEAEEDS--QGKEGPSGSGDSQLS-----------ASSRSESGRMKKSDNKMGITP 775
Query: 88 LAAGHP 93
L HP
Sbjct: 776 LRNYHP 781
>gi|197383784 zinc finger protein 213 [Homo sapiens]
Length = 459
Score = 30.4 bits (67), Expect = 2.4
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 31 QGDGNEDSPGQGEQAEEEEGGIQMN--SRMRAHSPAEGASVESSSPGPKKSDMCEGCRSL 88
QG E PG GE+A +Q R P+E A E++ G S
Sbjct: 102 QGWVREQHPGSGEEAVALVEDLQKQPVKAWRQDVPSEEAEPEAAGRG-----------SQ 150
Query: 89 AAGHPGYISHDKETSIKYVSHQHPSHPQLFSIVRQACVRSLSCEVCPGREGPIFFGD 145
A G P + + S+ H H + P + + +C V G GP+ GD
Sbjct: 151 ATGPPPTVGARRRPSVPQEQHSHSAQPPALLKEGRPGETTDTCFV-SGVHGPVALGD 206
>gi|32698678 zinc finger protein 213 [Homo sapiens]
Length = 459
Score = 30.4 bits (67), Expect = 2.4
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 31 QGDGNEDSPGQGEQAEEEEGGIQMN--SRMRAHSPAEGASVESSSPGPKKSDMCEGCRSL 88
QG E PG GE+A +Q R P+E A E++ G S
Sbjct: 102 QGWVREQHPGSGEEAVALVEDLQKQPVKAWRQDVPSEEAEPEAAGRG-----------SQ 150
Query: 89 AAGHPGYISHDKETSIKYVSHQHPSHPQLFSIVRQACVRSLSCEVCPGREGPIFFGD 145
A G P + + S+ H H + P + + +C V G GP+ GD
Sbjct: 151 ATGPPPTVGARRRPSVPQEQHSHSAQPPALLKEGRPGETTDTCFV-SGVHGPVALGD 206
>gi|5730081 T-box, brain, 1 [Homo sapiens]
Length = 682
Score = 30.4 bits (67), Expect = 2.4
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 20/90 (22%)
Query: 27 APLPQGDGNE------------DSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSP 74
+PLP G + ++P + + + GI ++ R SPA+ ESSS
Sbjct: 594 SPLPPGAAEDAKPKDLSDSSWIETPSSIKSIDSSDSGIYEQAKRRRISPADTPVSESSS- 652
Query: 75 GPKKSDM-----CE-GCRSLAAGHPGYISH 98
P KS++ CE C +G+ G+ SH
Sbjct: 653 -PLKSEVLAQRDCEKNCAKDISGYYGFYSH 681
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 29.6 bits (65), Expect = 4.1
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 28 PLPQGDGNEDSPG----QGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSPGPKKSDMC 82
P+ +G G + S G +GE EE +GG + +S E SSSP + C
Sbjct: 1230 PMEEGGGEQGSSGGGSGEGEGCEEAQGGAKASSSQDLAMEEEEEGRSSSSPALPTAGNC 1288
>gi|58218970 protease, serine, 36 [Homo sapiens]
Length = 855
Score = 29.6 bits (65), Expect = 4.1
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 253 CLHTSFAWLLKACGSRLTEKLLEGAPTEDTLVQMEKLAGEAGVLLPGPWPGWPWGGTS 310
C T +W+L + + +L E+ + + GEA L P P WP GG++
Sbjct: 772 CQMTEGSWILVGMAVQGSRELFAAIGPEEAWIS--QTVGEANFLPPSGSPHWPTGGSN 827
>gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo
sapiens]
Length = 359
Score = 29.3 bits (64), Expect = 5.3
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 7 LCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEE 49
+C C L+ E+L PLP G E+ EEEE
Sbjct: 87 ICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEE 129
>gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo
sapiens]
Length = 375
Score = 29.3 bits (64), Expect = 5.3
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 7 LCHFCELHGPRTLFCTEVLHAPLPQGDGNEDSPGQGEQAEEEE 49
+C C L+ E+L PLP G E+ EEEE
Sbjct: 103 ICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEE 145
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 29.3 bits (64), Expect = 5.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 31 QGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPAEGASVESSSPGPKKSDMCEG 84
+G+G E+ G+GE+ E E G + EG E G + + EG
Sbjct: 884 EGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEG 937
>gi|20070191 thymic dendritic cell-derived factor 1 [Homo sapiens]
Length = 323
Score = 29.3 bits (64), Expect = 5.3
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 176 MMD--RIYLINSWPFLLGKVRGIIDELQGKALKVFEAEQFGCPQRAQRMNTAFTPFLHQR 233
MMD + ++ +SW F L G I Q K + P + + + +L R
Sbjct: 154 MMDSAQSFITSSWTFYLQADDGKIVIFQSKPEIQYAPHLEQEPTNLRESSLSKMSYLQMR 213
Query: 234 NGNAARSLTSLTSDDNLWACLHTSFAWLL 262
N A R+ D CL + W+L
Sbjct: 214 NSQAHRNFLEDGESDGFLRCLSLNSGWIL 242
>gi|222136585 timeless homolog [Homo sapiens]
Length = 1208
Score = 28.9 bits (63), Expect = 7.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 23 EVLHAPLPQGDGNEDSPGQGEQAEEEE 49
++L APLP+ G E+ + E+ EEEE
Sbjct: 648 QILSAPLPRQQGPEERGAEEEEEEEEE 674
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 28.9 bits (63), Expect = 7.0
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 43 EQAEEEEGGIQMNSRMRAHSPAEGASVESSSPGPKKSDMCEGCRSLAAGHPGYISHDKET 102
E+ ++E G +Q + RA + A A++E+SS PK + G S A P +
Sbjct: 506 EELQKESGPLQGKGKPRAWARAWAAALENSS--PKNLERSAGQSSPAKEGPLDLYPKLAD 563
Query: 103 SIKYVSHQHPSHPQLFSIVRQACVRSLSCEVCPGREGPIFFG 144
+I+ ++ P+H L + + + S E P GP+ G
Sbjct: 564 TIQ--TNPIPTHLSLVDSAQASPMPVDSVEADPTAVGPVLAG 603
>gi|50659084 suppressor of variegation 4-20 homolog 1 isoform 2
[Homo sapiens]
Length = 393
Score = 28.9 bits (63), Expect = 7.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 83 EGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSIVRQACVRSLSCEVCPGREGPIF 142
+ C L G +I+HD + K+VS + ACV++L ++ PG E +
Sbjct: 258 KNCAQLWLGPAAFINHDCRPNCKFVSTGRDT----------ACVKALR-DIEPGEEISCY 306
Query: 143 FGD 145
+GD
Sbjct: 307 YGD 309
>gi|50659082 suppressor of variegation 4-20 homolog 1 isoform 1
[Homo sapiens]
Length = 885
Score = 28.9 bits (63), Expect = 7.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 83 EGCRSLAAGHPGYISHDKETSIKYVSHQHPSHPQLFSIVRQACVRSLSCEVCPGREGPIF 142
+ C L G +I+HD + K+VS + ACV++L ++ PG E +
Sbjct: 258 KNCAQLWLGPAAFINHDCRPNCKFVSTGRDT----------ACVKALR-DIEPGEEISCY 306
Query: 143 FGD 145
+GD
Sbjct: 307 YGD 309
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 28.9 bits (63), Expect = 7.0
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 28 PLPQGDGNEDSPGQGEQAEEEEGGIQMNSRMRAHSPA-EGASVESSSPGPK 77
P+ + G ++ E+EEGG + + R H EG+ + + GPK
Sbjct: 930 PISKKKKRRKGSGSEQEGEDEEGGERKKKKRRRHPKGEEGSDDDETENGPK 980
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,568,212
Number of Sequences: 37866
Number of extensions: 779467
Number of successful extensions: 2587
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2545
Number of HSP's gapped (non-prelim): 54
length of query: 342
length of database: 18,247,518
effective HSP length: 103
effective length of query: 239
effective length of database: 14,347,320
effective search space: 3429009480
effective search space used: 3429009480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.