Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RAB2B Sequence: fasta or formatted (170aa) NCBI GI: 254281345
Description:

RAB2B protein isoform 2

Referenced in:

Rab

Other entries for this name:
alt prot [216aa] RAB2B protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         13           2
 C cysteine            1.8          3           2
 D aspartate           4.7          8           1
 E glutamate           7.6         13           2
 F phenylalanine       3.5          6           1
 G glycine             7.6         13           1
 H histidine           2.4          4           1
 I isoleucine          8.8         15           1
 K lysine              4.7          8           1
 L leucine             5.3          9           2
 M methionine          2.4          4           1
 N asparagine          5.9         10           1
 P proline             1.2          2           1
 Q glutamine           5.3          9           2
 R arginine            7.6         13           2
 S serine             10.6         18           3
 T threonine           5.3          9           1
 V valine              4.1          7           1
 W tryptophan          1.2          2           1
 Y tyrosine            2.4          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB2B protein isoform 2 
RAB2B                 1.000   RAB2B protein isoform 1 
RAB2A                 0.787   RAB2A, member RAS oncogene family 
RAB14                 0.505   GTPase Rab14 
RAB4A                 0.460   RAB4A, member RAS oncogene family 
RAB4B                 0.448   ras-related GTP-binding protein 4b 
RAB8B                 0.394   RAB8B, member RAS oncogene family 
RAB11B                0.387   RAB11B, member RAS oncogene family 
RAB11A                0.381   Ras-related protein Rab-11A 
RAB8A                 0.378   mel transforming oncogene 
RAB37                 0.368   RAB37, member RAS oncogene family isoform 2 
RAB37                 0.368   RAB37, member RAS oncogene family isoform 3 
RAB13                 0.365   RAB13, member RAS oncogene family 
RAB43                 0.362   RAB43 protein 
RAB39                 0.362   RAB39, member RAS oncogene family 
LOC100131294          0.356   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.356   PREDICTED: similar to hCG24991 
LOC100131294          0.356   PREDICTED: similar to hCG24991 
RAB10                 0.356   ras-related GTP-binding protein RAB10 
RAB39B                0.349   RAB39B, member RAS oncogene family 
RAB1A                 0.346   RAB1A, member RAS oncogene family isoform 1 
RAB26                 0.343   RAB26, member RAS oncogene family 
RAB18                 0.340   RAB18, member RAS oncogene family 
RAB1B                 0.340   RAB1B, member RAS oncogene family 
RAB19                 0.333   RAB19, member RAS oncogene family 
RAB25                 0.330   RAB25 
RAB5B                 0.327   RAB5B, member RAS oncogene family 
RAB5C                 0.317   RAB5C, member RAS oncogene family isoform a 
RAB5C                 0.317   RAB5C, member RAS oncogene family isoform b 
RAB12                 0.317   RAB12, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press