Guide to the Human Genome
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Name: FANCE Sequence: fasta or formatted (536aa) NCBI GI: 11345454
Description:

Fanconi anemia, complementation group E

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         47           2
 C cysteine            2.4         13           2
 D aspartate           4.3         23           2
 E glutamate           9.3         50           4
 F phenylalanine       1.1          6           1
 G glycine             7.1         38           2
 H histidine           0.7          4           1
 I isoleucine          1.3          7           1
 K lysine              4.7         25           2
 L leucine            19.2        103           3
 M methionine          2.6         14           1
 N asparagine          1.1          6           1
 P proline             7.6         41           2
 Q glutamine           6.0         32           2
 R arginine            6.5         35           2
 S serine              6.9         37           2
 T threonine           4.5         24           2
 V valine              3.7         20           2
 W tryptophan          1.3          7           1
 Y tyrosine            0.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Fanconi anemia, complementation group E 
RGAG4                 0.019   retrotransposon gag domain containing 4 
ATRX                  0.015   transcriptional regulator ATRX isoform 2 
ATRX                  0.015   transcriptional regulator ATRX isoform 1 
KIF21B                0.014   kinesin family member 21B 
ANO8                  0.014   anoctamin 8 
ANP32E                0.014   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.014   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.014   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
VGF                   0.014   VGF nerve growth factor inducible precursor 
NES                   0.013   nestin 
PRG2                  0.013   plasticity-related protein 2 
OTUD3                 0.013   OTU domain containing 3 
LOC100170229          0.012   hypothetical protein LOC100170229 
NEFH                  0.012   neurofilament, heavy polypeptide 200kDa 
KIAA1211              0.012   hypothetical protein LOC57482 
KIF21A                0.012   kinesin family member 21A 
BAZ1A                 0.012   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.012   bromodomain adjacent to zinc finger domain, 1A isofo...
BAT2D1                0.012   HBxAg transactivated protein 2 
LOC100133599          0.011   PREDICTED: hypothetical protein 
GNAL                  0.011   guanine nucleotide binding protein (G protein), alph...
CCDC64B               0.011   coiled-coil domain containing 64B 
AHDC1                 0.011   AT hook, DNA binding motif, containing 1 
TSC2                  0.011   tuberous sclerosis 2 isoform 4 
TSC2                  0.011   tuberous sclerosis 2 isoform 1 
TSC2                  0.011   tuberous sclerosis 2 isoform 5 
CTDP1                 0.011   CTD (carboxy-terminal domain, RNA polymerase II, pol...
LOC100291206          0.011   PREDICTED: hypothetical protein XP_002347014 
LOC100294088          0.011   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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