Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 211904177
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
(551 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|211904177 hypothetical protein LOC388336 [Homo sapiens] 1126 0.0
gi|223633890 hypothetical protein LOC729956 [Homo sapiens] 238 8e-63
gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo sapi... 175 8e-44
gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo sapi... 135 1e-31
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 132 1e-30
gi|113429443 PREDICTED: transmembrane protein 46-like [Homo sapi... 132 1e-30
gi|39930575 shisa homolog 4 [Homo sapiens] 54 3e-07
gi|56090523 shisa homolog 2 [Homo sapiens] 50 7e-06
gi|122937450 shisa homolog 3 [Homo sapiens] 49 9e-06
gi|28269693 xylosyltransferase I [Homo sapiens] 36 0.080
gi|27597059 DnaJ homolog, subfamily C, member 9 [Homo sapiens] 35 0.14
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 35 0.18
gi|116268103 zinc finger, FYVE domain containing 19 [Homo sapiens] 35 0.23
gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo ... 34 0.30
gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo ... 34 0.30
gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo ... 34 0.30
gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens] 34 0.30
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 34 0.30
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 33 0.68
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 33 0.68
gi|7706435 headcase [Homo sapiens] 33 0.68
gi|239756892 PREDICTED: hypothetical protein [Homo sapiens] 33 0.89
gi|169204628 PREDICTED: similar to hCG2045644 [Homo sapiens] 33 0.89
gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo ... 33 0.89
gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo ... 33 0.89
gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo ... 33 0.89
gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo ... 33 0.89
gi|12707580 paired-like homeobox 2b [Homo sapiens] 33 0.89
gi|239754489 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 32 1.2
>gi|211904177 hypothetical protein LOC388336 [Homo sapiens]
Length = 551
Score = 1126 bits (2913), Expect = 0.0
Identities = 551/551 (100%), Positives = 551/551 (100%)
Query: 1 MALRRLLLLLLLSLESLDLLPSVHGARGRAANRTLSAGGAAVGGRRAGGALARGGRELNG 60
MALRRLLLLLLLSLESLDLLPSVHGARGRAANRTLSAGGAAVGGRRAGGALARGGRELNG
Sbjct: 1 MALRRLLLLLLLSLESLDLLPSVHGARGRAANRTLSAGGAAVGGRRAGGALARGGRELNG 60
Query: 61 TARAPGIPEAGSRRGQPAAAVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYC 120
TARAPGIPEAGSRRGQPAAAVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYC
Sbjct: 61 TARAPGIPEAGSRRGQPAAAVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYC 120
Query: 121 CGTCYYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYI 180
CGTCYYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYI
Sbjct: 121 CGTCYYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYI 180
Query: 181 TCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAIDT 240
TCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAIDT
Sbjct: 181 TCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAIDT 240
Query: 241 SPKENTPVRSSSKNHYTPVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTKGD 300
SPKENTPVRSSSKNHYTPVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTKGD
Sbjct: 241 SPKENTPVRSSSKNHYTPVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTKGD 300
Query: 301 HQYNHPILSSVTQIPPHEKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPS 360
HQYNHPILSSVTQIPPHEKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPS
Sbjct: 301 HQYNHPILSSVTQIPPHEKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPS 360
Query: 361 KYSSLKRLTDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQD 420
KYSSLKRLTDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQD
Sbjct: 361 KYSSLKRLTDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQD 420
Query: 421 RVLSPDRGLPDEFSMPYDRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDV 480
RVLSPDRGLPDEFSMPYDRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDV
Sbjct: 421 RVLSPDRGLPDEFSMPYDRILSDEQLLSTERLHSQDPLLSPERTAFPEQSLSRAISHTDV 480
Query: 481 FVSTPVLDRYRMSKMHSHPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHT 540
FVSTPVLDRYRMSKMHSHPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHT
Sbjct: 481 FVSTPVLDRYRMSKMHSHPSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHT 540
Query: 541 CYTASKTEVTV 551
CYTASKTEVTV
Sbjct: 541 CYTASKTEVTV 551
>gi|223633890 hypothetical protein LOC729956 [Homo sapiens]
Length = 538
Score = 238 bits (608), Expect = 8e-63
Identities = 213/613 (34%), Positives = 277/613 (45%), Gaps = 145/613 (23%)
Query: 6 LLLLLLLSLESLDLLPSVHGARGRAANRTLSAGGAAVGG-----RRAGGALARGGRELNG 60
LLLL+LL+ S AR R +N T + + RR GAL GG
Sbjct: 4 LLLLVLLA-------SSAGQARARPSNATSAEPAGPLPALLAHLRRLTGALTGGGG---- 52
Query: 61 TARAPGIPEAGSRRGQPAAAVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYC 120
A +PG A R PA AAA A E C GYYDV GQYD F C S Y +C
Sbjct: 53 -AASPG---ANGTRTGPAGGAGAAARAPPPAELCHGYYDVMGQYDATFNC--STGSYRFC 106
Query: 121 CGTCYYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTKV----------VSPGPENKYDPE 170
CGTC+YRFCC+ RH +L Q C+NY +P W TP PGP E
Sbjct: 107 CGTCHYRFCCEHRHMRLAQASCSNYDTPRWATTPPPLAGGAGGAGGAGGGPGPGQAGWLE 166
Query: 171 KDKT------------NFTVYITCGVIAFVIVAGVFAKVSYDKAHRPP---REMNIHRAL 215
+T T Y+ CGVI+F + GV AKV++ KA R P R++N+ RAL
Sbjct: 167 GGRTGGAGGRGGEGPGGSTAYVVCGVISFALAVGVGAKVAFSKASRAPRAHRDINVPRAL 226
Query: 216 ADILRQQ-GPIPIAHCERETISAIDTSPKENTPVRSSSKNHYTPVRTAKQTPGHYGKDAY 274
DILR Q GP T P R++ TPG G D+
Sbjct: 227 VDILRHQAGP--------------GTRPDR--------------ARSSSLTPGIGGPDSM 258
Query: 275 RSGGP-DLHNFISSGFVTLGRGHTKGDHQYNHPILSSVTQIPPHEKPRMNNILTSATEPY 333
P +L+N + + P L PP +
Sbjct: 259 PPRTPKNLYNTVKT------------------PNLDWRALPPPSPSLHYST--------- 291
Query: 334 DLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKEADEYYMRRRHLPDLAARGTLP 393
LS SRSF NL+HLPPSYE+AVK+ ++YSSLKRL +K+ DE Y++RR L RGTLP
Sbjct: 292 -LSCSRSFHNLSHLPPSYEAAVKSELNRYSSLKRLAEKDLDEAYLKRRPLE--LPRGTLP 348
Query: 394 LNVIQ------------MSQQKPLPRERPRRPIRAMSQDRVLSPDRGLPDEFSMPYDRIL 441
L+ ++ + L P R MSQ+ +L EF++P R++
Sbjct: 349 LHALRRPGTGGGYRMEAWGGPEELGLAPAPNPRRVMSQEHLLGDGGRSRYEFTLPRARLV 408
Query: 442 SDEQLL--STERL-HSQDPLLSPERT-AFPEQSLSR---AISHTDVFVS-----TPVLDR 489
S E LL S E L S++ LLSP R+ A P +R A SH+++ + TP+
Sbjct: 409 SQEHLLLSSPEALRQSREHLLSPPRSPALPPDPTARASLAASHSNLLLGPGGPPTPLRGL 468
Query: 490 YRMSKMHSH--------PSASNNSYATLGQSQTAAKRHAFASRRHNTVEQLHYIPGHHT- 540
S +H+H P + S A G T A+R F +R T+EQL +IPGHH
Sbjct: 469 PPPSSLHAHHHHALHGSPQPAWMSDAG-GGGGTLARRPPF--QRQGTLEQLQFIPGHHLP 525
Query: 541 --CYTASKTEVTV 551
TASK EVTV
Sbjct: 526 QHLRTASKNEVTV 538
>gi|223633980 hypothetical protein LOC729993 isoform 1 [Homo
sapiens]
Length = 465
Score = 175 bits (444), Expect = 8e-44
Identities = 130/440 (29%), Positives = 190/440 (43%), Gaps = 116/440 (26%)
Query: 5 RLLLLLLLSLESLDLLPSVHGARGRAANRTLSAGGAAVGGRRAGGALARGGRELNGTARA 64
R +L LLL +L V A+ RA + L+ + GG L G +G A
Sbjct: 43 RRVLRLLLGCFLTELCARVCRAQERAGHGQLA---------QLGGVLLLAGGNRSGAA-- 91
Query: 65 PGIPEAGSRRGQPAAAVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYCCGTC 124
+ A A A + A T + C GY+DV GQ+D F C++ + +++CCGTC
Sbjct: 92 ------SGEASEGAEASDAPPTRAPTPDFCRGYFDVMGQWDPPFNCSSGD--FIFCCGTC 143
Query: 125 YYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYITCGV 184
+RFCC + +L+Q CTNY +P+W+ T P +DP KDKTN VYI CGV
Sbjct: 144 GFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDP--LHDPTKDKTNLIVYIICGV 201
Query: 185 IAFVIVAGVFAKVSYDKAHRPPREMNIHRALADILRQQGPIPIAHCERETISAIDTSPKE 244
+A +++ G+F K+ +KAHRP RE ++ RALAD++R QG H ER+ + E
Sbjct: 202 VAVMVLVGIFTKLGLEKAHRPQRE-HMSRALADVMRPQGHCNTDHMERDLNIVVHVQHYE 260
Query: 245 NTPVRSSSKNHYTPVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTKGDHQYN 304
N R TP+ T ++N + + + GH
Sbjct: 261 NMDTR-------TPINNLHAT--------------QMNNAVPTSPLLQQMGH-------- 291
Query: 305 HPILSSVTQIPPHEKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSS 364
PH P + I + PY+ PP E +KY+S
Sbjct: 292 -----------PHSYPNLGQI----SNPYE-----------QQPPGKEL------NKYAS 319
Query: 365 LKRL----------------TDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRE 408
LK + DK D++Y +RRHL +LAA+G LPL+
Sbjct: 320 LKAVGSSDGDWAVSTLKSPKADKVNDDFYTKRRHLAELAAKGNLPLH------------- 366
Query: 409 RPRRPIRAMSQDRVLSPDRG 428
P+R + R SP+ G
Sbjct: 367 ----PVRVEDEPRAFSPEHG 382
>gi|223633982 hypothetical protein LOC729993 isoform 2 [Homo
sapiens]
Length = 262
Score = 135 bits (339), Expect = 1e-31
Identities = 75/204 (36%), Positives = 108/204 (52%), Gaps = 21/204 (10%)
Query: 5 RLLLLLLLSLESLDLLPSVHGARGRAANRTLSAGGAAVGGRRAGGALARGGRELNGTARA 64
R +L LLL +L V A+ RA + L+ + GG L G +G A
Sbjct: 43 RRVLRLLLGCFLTELCARVCRAQERAGHGQLA---------QLGGVLLLAGGNRSGAA-- 91
Query: 65 PGIPEAGSRRGQPAAAVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYCCGTC 124
+ A A A + A T + C GY+DV GQ+D F C++ + +++CCGTC
Sbjct: 92 ------SGEASEGAEASDAPPTRAPTPDFCRGYFDVMGQWDPPFNCSSGD--FIFCCGTC 143
Query: 125 YYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYITCGV 184
+RFCC + +L+Q CTNY +P+W+ T P +DP KDKTN VYI CGV
Sbjct: 144 GFRFCCTFKKRRLNQSTCTNYDTPLWLNTGKPPARKDDP--LHDPTKDKTNLIVYIICGV 201
Query: 185 IAFVIVAGVFAKVSYDKAHRPPRE 208
+A +++ G+F K+ +KAHRP RE
Sbjct: 202 VAVMVLVGIFTKLGLEKAHRPQRE 225
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 132 bits (331), Expect = 1e-30
Identities = 71/187 (37%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 54 GGRELNGTARAPGI--------------PEAGSRRGQPAAAVAAA--ASAAVTYETCWGY 97
G R L G R PG+ P +G R G P A AA +A + C GY
Sbjct: 5 GARGLLGGRRPPGLRLALALRLALLLARPPSG-RAGAPEAQGPAAPGTTAPEGGDRCRGY 63
Query: 98 YDVSGQYDKEFECNNSESGYLYCCGTCYYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTK 157
YDV GQ+D F C S Y +CCGTC YRFCC +LDQ +C+NY +P WVQT
Sbjct: 64 YDVMGQWDPPFNC--SSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPP 121
Query: 158 VVSPGPENKYDPEKDKTNFTVYITCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALAD 217
+ DP +++++ VY CGV A +++AG+ A++ ++AH P + RAL +
Sbjct: 122 ARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTE 181
Query: 218 ILRQQGP 224
+L+Q GP
Sbjct: 182 LLKQPGP 188
>gi|113429443 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 492
Score = 132 bits (331), Expect = 1e-30
Identities = 71/187 (37%), Positives = 99/187 (52%), Gaps = 19/187 (10%)
Query: 54 GGRELNGTARAPGI--------------PEAGSRRGQPAAAVAAA--ASAAVTYETCWGY 97
G R L G R PG+ P +G R G P A AA +A + C GY
Sbjct: 5 GARGLLGGRRPPGLRLALALRLALLLARPPSG-RAGAPEAQGPAAPGTTAPEGGDRCRGY 63
Query: 98 YDVSGQYDKEFECNNSESGYLYCCGTCYYRFCCKKRHEKLDQRQCTNYQSPVWVQTPSTK 157
YDV GQ+D F C S Y +CCGTC YRFCC +LDQ +C+NY +P WVQT
Sbjct: 64 YDVMGQWDPPFNC--SSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPP 121
Query: 158 VVSPGPENKYDPEKDKTNFTVYITCGVIAFVIVAGVFAKVSYDKAHRPPREMNIHRALAD 217
+ DP +++++ VY CGV A +++AG+ A++ ++AH P + RAL +
Sbjct: 122 ARARDTAAPRDPGRERSHTAVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTE 181
Query: 218 ILRQQGP 224
+L+Q GP
Sbjct: 182 LLKQPGP 188
>gi|39930575 shisa homolog 4 [Homo sapiens]
Length = 197
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 67 IPEAGSRRGQPAAAVAA---AASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYCCGT 123
+P AG RR P A+A A + E C Y D +G + F C + +CCGT
Sbjct: 1 MPPAGLRRAAPLTAIALLVLGAPLVLAGEDCLWYLDRNGSWHPGFNCEF----FTFCCGT 56
Query: 124 CYYRFCCKKRHEKLDQRQ 141
CY+R+CC+ + +RQ
Sbjct: 57 CYHRYCCRDLTLLITERQ 74
>gi|56090523 shisa homolog 2 [Homo sapiens]
Length = 295
Score = 49.7 bits (117), Expect = 7e-06
Identities = 33/114 (28%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 80 AVAAAASAAVTYETCWGYYDVSGQYDKEFECNNSESG--YLYCCGTCYYRFCCKKRHEKL 137
A AA A + E C G+ D G + F+C G CCG+C R+CC +L
Sbjct: 24 AALLAAGARASGEYCHGWLDAQGVWRIGFQCPERFDGGDATICCGSCALRYCCSSAEARL 83
Query: 138 DQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYITCGVIAFVIVA 191
DQ C N + PG +K P D + +Y+ ++ V VA
Sbjct: 84 DQGGCDNDR--------QQGAGEPGRADKDGP--DGSAVPIYVPFLIVGSVFVA 127
>gi|122937450 shisa homolog 3 [Homo sapiens]
Length = 238
Score = 49.3 bits (116), Expect = 9e-06
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 85 ASAAVTYETCWGYYDVSGQYDKEFECNNSESGY--LYCCGTCYYRFCCKKRHEKLDQRQC 142
A A + E C G+ DV G Y + F+C CCG+C R+CC +L+Q C
Sbjct: 19 AGAQQSGEYCHGWVDVQGNYHEGFQCPEDFDTLDATICCGSCALRYCCAAADARLEQGGC 78
Query: 143 TN 144
TN
Sbjct: 79 TN 80
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 36.2 bits (82), Expect = 0.080
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 29 RAANRTLSAGGAAVGGRRAGGALARGGRELNGTARA--PGIP---EAGSRRGQPAAAVAA 83
R R L A AA G GG GGR AR PG P + SR PA A+
Sbjct: 64 RRERRDLPAEPAAARGGGGGGGGGGGGRGPQARARGGGPGEPRGQQPASRGALPARALDP 123
Query: 84 AASAAVTYETCWGYYDVSGQYDKEFECNNSES 115
S +T ET GY+ + + NN S
Sbjct: 124 HPSPLITLETQDGYFSHRPKEKVRTDSNNENS 155
>gi|27597059 DnaJ homolog, subfamily C, member 9 [Homo sapiens]
Length = 260
Score = 35.4 bits (80), Expect = 0.14
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 307 ILSSVTQIPPHEKPRMNNILTSATEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLK 366
I+ SV + E+PR+ NI+ A + ++ PSY + VK + K ++ K
Sbjct: 144 IMESVLCVQYTEEPRIRNIIQQAIDAGEV-------------PSYNAFVKESKQKMNARK 190
Query: 367 RLTDKEADEYYMRRRHLPDLAARGTLPLNVIQMSQQKPLPRE 408
R +EA E M R+ L G L S+QK +E
Sbjct: 191 RRAQEEAKEAEMSRKELG--LDEGVDSLKAAIQSRQKDRQKE 230
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 35.0 bits (79), Expect = 0.18
Identities = 26/67 (38%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 24 HGARGRAANRTLSAGGAAVGGRRAGGALARGGRELNGTARAPGIPEAGSRRGQPAA--AV 81
H R R R + GG GGRR G R + + PG P G G P + AV
Sbjct: 3 HSCRWRFPARPGTTGGGGGGGRRGLGGAPR--QRVPALLLPPGPPVGGGGPGAPPSPPAV 60
Query: 82 AAAASAA 88
AAAA+AA
Sbjct: 61 AAAAAAA 67
>gi|116268103 zinc finger, FYVE domain containing 19 [Homo sapiens]
Length = 471
Score = 34.7 bits (78), Expect = 0.23
Identities = 69/305 (22%), Positives = 105/305 (34%), Gaps = 48/305 (15%)
Query: 25 GARGRAANRTLSAGGAAVGGRRAGGALARGGRELNGTARAPGIPEAGSRRGQPAAAVAAA 84
G R + L GG G G R GR R PG+ PA A
Sbjct: 17 GCRRASGFPALGRGGTVPVGVWGGAGQGREGRSWGEGPRGPGLGRRDLSSADPAVLGATM 76
Query: 85 ASAAVTYETCWGYYDVSGQYDKEFECNNSESGYLYCCGTCYY-----------RFCCKKR 133
S C+G + KE+ C N G +C G + + CK+
Sbjct: 77 ES------RCYGCAVKFTLFKKEYGCKN--CGRAFCSGCLSFSAAVPRTGNTQQKVCKQC 128
Query: 134 HEKLDQRQCTNYQSPVWVQTPSTKVVSPGPENKYDPEKDKTNFTVYITCGVIAFVIVAGV 193
HE L + N + W + K E K P ++ ++A
Sbjct: 129 HEVLTRGSSAN--ASKWSPPQNYKKRVAALEAKQKPSTSQSQGLTR------QDQMIAER 180
Query: 194 FAKVSYD-KAHRPPREMNIHRALADIL-RQQGPIPIAHCERETISAIDTSPKENTPVRSS 251
A++ + K P + I LA + +QG IP ++A+ P ++
Sbjct: 181 LARLRQENKPKLVPSQAEIEARLAALKDERQGSIPSTQEMEARLAALQ---GRVLPSQTP 237
Query: 252 SKNHYTP-VRT-AKQTPGHYGK--------DAYRSGGP--DLHNFISSGFVTLGRGHTKG 299
H+TP RT A+QT + ++++ GGP L N ++ G G G T
Sbjct: 238 QPAHHTPDTRTQAQQTQDLLTQLAAEVAIDESWKGGGPAASLQNDLNQG----GPGSTNS 293
Query: 300 DHQYN 304
Q N
Sbjct: 294 KRQAN 298
>gi|169167848 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 34.3 bits (77), Expect = 0.30
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 94 CWGYYDVSGQYDKEFECNNSESGYL--YCCGTCYYRFCCKK 132
C GYY ++ + + F+C G YCCG ++CC +
Sbjct: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSE 48
>gi|169167926 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 34.3 bits (77), Expect = 0.30
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 94 CWGYYDVSGQYDKEFECNNSESGYL--YCCGTCYYRFCCKK 132
C GYY ++ + + F+C G YCCG ++CC +
Sbjct: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSE 48
>gi|169167633 PREDICTED: hypothetical protein LOC100132916 [Homo
sapiens]
Length = 160
Score = 34.3 bits (77), Expect = 0.30
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 94 CWGYYDVSGQYDKEFECNNSESGYL--YCCGTCYYRFCCKK 132
C GYY ++ + + F+C G YCCG ++CC +
Sbjct: 8 CSGYYSLNQSFVEPFQCPRRGEGAALQYCCGFADLKYCCSE 48
>gi|30387611 cell division cycle 2-like 6 (CDK8-like) [Homo sapiens]
Length = 502
Score = 34.3 bits (77), Expect = 0.30
Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 23/185 (12%)
Query: 205 PPREMNIHRALADILRQQGPIP---------IAHCERETISAIDTSPKENTPVRSSSKNH 255
P + + +AL D Q+ P+P I + +RE ++ D K + + H
Sbjct: 320 PTKRITSEQALQDPYFQEDPLPTLDVFAGCQIPYPKREFLNEDDPEEKGDKNQQQQQNQH 379
Query: 256 YTPVRTAKQTPGHYGKDAYRSGGPDLHNFISSGFVTLGRGHTKGDHQYNHPILSSVTQIP 315
P +Q + + ++G G G T Q++ SS+ Q+P
Sbjct: 380 QQPTAPPQQAAAPPQAPPPQQNSTQTNG--TAGGAGAGVGGTGAGLQHSQD--SSLNQVP 435
Query: 316 PHEKPRMNNILTSA---TEPYDLSFSRSFQNLAHLPPSYESAVKTNPSKYSSLKRLTDKE 372
P++KPR+ ++ P D S S N Y+S+V+ + S+L + +
Sbjct: 436 PNKKPRLGPSGANSGGPVMPSDYQHSSSRLN-------YQSSVQGSSQSQSTLGYSSSSQ 488
Query: 373 ADEYY 377
Y
Sbjct: 489 QSSQY 493
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 34.3 bits (77), Expect = 0.30
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 36 SAGGAAVG-GRRAGGALARGGRELNGTARAPGIPEAGSRRGQPAAAVAAAASAA 88
+ GGAA G G +GG GG G++ +P A + AAA AAAA+AA
Sbjct: 129 TGGGAAGGPGDDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAAAAA 182
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 33.1 bits (74), Expect = 0.68
Identities = 22/62 (35%), Positives = 28/62 (45%)
Query: 27 RGRAANRTLSAGGAAVGGRRAGGALARGGRELNGTARAPGIPEAGSRRGQPAAAVAAAAS 86
R RA R + A A GR+ GA G R +G + + R Q A AAAA+
Sbjct: 851 RVRAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAA 910
Query: 87 AA 88
AA
Sbjct: 911 AA 912
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 33.1 bits (74), Expect = 0.68
Identities = 22/62 (35%), Positives = 28/62 (45%)
Query: 27 RGRAANRTLSAGGAAVGGRRAGGALARGGRELNGTARAPGIPEAGSRRGQPAAAVAAAAS 86
R RA R + A A GR+ GA G R +G + + R Q A AAAA+
Sbjct: 851 RVRAGRRRVGARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAA 910
Query: 87 AA 88
AA
Sbjct: 911 AA 912
>gi|7706435 headcase [Homo sapiens]
Length = 543
Score = 33.1 bits (74), Expect = 0.68
Identities = 42/138 (30%), Positives = 54/138 (39%), Gaps = 32/138 (23%)
Query: 25 GARGRAANRTLSA----GGAAVGGRRAGGALARGGRELNGTARAPGIPEAGSRRGQPAAA 80
GA G AA L+A G AA G AGGA GG GT G A + G AA
Sbjct: 34 GAAGAAAGGALAAAAGCGAAAAGAPGAGGAAGAGGA---GT----GAANAAAAAGAAAAG 86
Query: 81 VAAAASAAVTYETCWGYYDVSGQYD--KEFECNNSESGYLYC-CGT-----CYY------ 126
A + T C V + D ++ CNN +C C T C+Y
Sbjct: 87 DAKNEAPCATPLICSFGRPVDLEKDDYQKVVCNNE-----HCPCSTWMHLQCFYEWESSI 141
Query: 127 --RFCCKKRHEKLDQRQC 142
+F C R +++QC
Sbjct: 142 LVQFNCIGRARSWNEKQC 159
Score = 30.8 bits (68), Expect = 3.4
Identities = 24/54 (44%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 35 LSAGGAAVGGRRAGGALARGGRELNGTARAPGIPEAGSRRGQPAAAVAAAASAA 88
L+A GAA G AGGALA A A G P AG G A AA +AA
Sbjct: 30 LAAAGAA--GAAAGGALAAAA---GCGAAAAGAPGAGGAAGAGGAGTGAANAAA 78
>gi|239756892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 576
Score = 32.7 bits (73), Expect = 0.89
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 24 HGARGRAANRTLSAGGAAVGGRRAGGALARGG-RELNGTARAPGIPEAG-----SRRGQP 77
HG GR GGAA+G +RAG G R G R+ G P G +RR P
Sbjct: 247 HGPAGRELEGP--GGGAALGEQRAGATTTPGSRRRRRGAGRSAGWPHPGGPSRPTRRNAP 304
Query: 78 AAAVAAA 84
A AA
Sbjct: 305 PARPDAA 311
>gi|169204628 PREDICTED: similar to hCG2045644 [Homo sapiens]
Length = 363
Score = 32.7 bits (73), Expect = 0.89
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 48 GGALARGGRELNGTARAPGIPEAGSRRGQPAAAVAAAASAAVTYETCW 95
G A RG GT+RA A +R G P++ VAAAA CW
Sbjct: 218 GLAGRRGQCASPGTSRAAAAGRARARTGSPSSDVAAAAGRITLLALCW 265
>gi|239751388 PREDICTED: hypothetical protein XP_002347834 [Homo
sapiens]
Length = 404
Score = 32.7 bits (73), Expect = 0.89
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 24 HGARGRAANRTLSAGGAAVGGRRAGGALARGG-RELNGTARAPGIPEAG-----SRRGQP 77
HG GR GGAA+G +RAG G R G R+ G P G +RR P
Sbjct: 247 HGPAGRELEGP--GGGAALGEQRAGATTTPGSRRRRRGAGRSAGWPHPGGPSRPTRRNAP 304
Query: 78 AAAVAAA 84
A AA
Sbjct: 305 PARPDAA 311
>gi|239745895 PREDICTED: hypothetical protein XP_002343612 [Homo
sapiens]
Length = 404
Score = 32.7 bits (73), Expect = 0.89
Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 24 HGARGRAANRTLSAGGAAVGGRRAGGALARGG-RELNGTARAPGIPEAG-----SRRGQP 77
HG GR GGAA+G +RAG G R G R+ G P G +RR P
Sbjct: 247 HGPAGRELEGP--GGGAALGEQRAGATTTPGSRRRRRGAGRSAGWPHPGGPSRPTRRNAP 304
Query: 78 AAAVAAA 84
A AA
Sbjct: 305 PARPDAA 311
>gi|67514036 SH3-domain kinase binding protein 1 isoform b [Homo
sapiens]
Length = 628
Score = 32.7 bits (73), Expect = 0.89
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 18/155 (11%)
Query: 378 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLP-DEFSMP 436
+++ +P + + P +S+ LP RP RP+ ++ R SP L S
Sbjct: 353 LQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHTRGDSPKIDLAGSSLSGI 412
Query: 437 YDRILSDEQ-----------LLSTERLHSQDPLLSPERTAF--PEQSL-SRAISHTDVFV 482
D+ LSD + STE+L S P+ T P QSL S ++S D+F
Sbjct: 413 LDKDLSDRSNDIDLEGFDSVVSSTEKL-SHPTTSRPKATGRRPPSQSLTSSSLSSPDIFD 471
Query: 483 S-TPVLDR-YRMSKMHSHPSASNNSYATLGQSQTA 515
S +P D+ +S H AS + T+ SQ +
Sbjct: 472 SPSPEEDKEEHISLAHRGVDASKKTSKTVTISQVS 506
>gi|13994242 SH3-domain kinase binding protein 1 isoform a [Homo
sapiens]
Length = 665
Score = 32.7 bits (73), Expect = 0.89
Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 18/155 (11%)
Query: 378 MRRRHLPDLAARGTLPLNVIQMSQQKPLPRERPRRPIRAMSQDRVLSPDRGLP-DEFSMP 436
+++ +P + + P +S+ LP RP RP+ ++ R SP L S
Sbjct: 390 LQKPSVPAIPPKKPRPPKTNSLSRPGALPPRRPERPVGPLTHTRGDSPKIDLAGSSLSGI 449
Query: 437 YDRILSDEQ-----------LLSTERLHSQDPLLSPERTAF--PEQSL-SRAISHTDVFV 482
D+ LSD + STE+L S P+ T P QSL S ++S D+F
Sbjct: 450 LDKDLSDRSNDIDLEGFDSVVSSTEKL-SHPTTSRPKATGRRPPSQSLTSSSLSSPDIFD 508
Query: 483 S-TPVLDR-YRMSKMHSHPSASNNSYATLGQSQTA 515
S +P D+ +S H AS + T+ SQ +
Sbjct: 509 SPSPEEDKEEHISLAHRGVDASKKTSKTVTISQVS 543
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 32.7 bits (73), Expect = 0.89
Identities = 27/76 (35%), Positives = 30/76 (39%)
Query: 13 SLESLDLLPSVHGARGRAANRTLSAGGAAVGGRRAGGALARGGRELNGTARAPGIPEAGS 72
S E+ P G G N T S G GG A A G G PG A +
Sbjct: 184 SKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAA 243
Query: 73 RRGQPAAAVAAAASAA 88
AAA AAAA+AA
Sbjct: 244 AAAAAAAAAAAAAAAA 259
>gi|239754489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 228
Score = 32.3 bits (72), Expect = 1.2
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 21/72 (29%)
Query: 24 HGARGRAANRTLSAGGAAVGG-----------------RRAGGALARGGRELNGTARAPG 66
H A GR A R AG A + RR GG RGGR G AR PG
Sbjct: 93 HWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGG---RGGRGA-GRARKPG 148
Query: 67 IPEAGSRRGQPA 78
AG+ R PA
Sbjct: 149 PDRAGAERSLPA 160
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 32.3 bits (72), Expect = 1.2
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 21/72 (29%)
Query: 24 HGARGRAANRTLSAGGAAVGG-----------------RRAGGALARGGRELNGTARAPG 66
H A GR A R AG A + RR GG RGGR G AR PG
Sbjct: 96 HWAAGRRAQREQGAGAAVLADFGHVRAAPSGLRRRRLQRRRGG---RGGRGA-GRARKPG 151
Query: 67 IPEAGSRRGQPA 78
AG+ R PA
Sbjct: 152 PDRAGAERSLPA 163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,171,075
Number of Sequences: 37866
Number of extensions: 1151005
Number of successful extensions: 5478
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 5237
Number of HSP's gapped (non-prelim): 265
length of query: 551
length of database: 18,247,518
effective HSP length: 107
effective length of query: 444
effective length of database: 14,195,856
effective search space: 6302960064
effective search space used: 6302960064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.