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Search of human proteins with 21071058
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
(1052 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 2128 0.0
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 1727 0.0
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 1720 0.0
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 450 e-126
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 450 e-126
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 450 e-126
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 450 e-126
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 449 e-126
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 449 e-126
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 449 e-126
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 449 e-126
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 434 e-121
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 434 e-121
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 431 e-120
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 429 e-120
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 423 e-118
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 422 e-118
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 422 e-118
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 422 e-118
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 415 e-115
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 410 e-114
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 402 e-112
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 402 e-112
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 401 e-111
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 319 1e-86
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 319 1e-86
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 318 1e-86
gi|4557565 excision repair cross-complementing rodent repair def... 289 1e-77
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 272 1e-72
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 256 1e-67
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 2128 bits (5513), Expect = 0.0
Identities = 1052/1052 (100%), Positives = 1052/1052 (100%)
Query: 1 MSSAAEPPPPPPPESAPSKPAASIASGGSNSSNKGGPEGVAAQAVASAVSAGPADAEMEE 60
MSSAAEPPPPPPPESAPSKPAASIASGGSNSSNKGGPEGVAAQAVASAVSAGPADAEMEE
Sbjct: 1 MSSAAEPPPPPPPESAPSKPAASIASGGSNSSNKGGPEGVAAQAVASAVSAGPADAEMEE 60
Query: 61 IFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKM 120
IFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKM
Sbjct: 61 IFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKM 120
Query: 121 KPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKL 180
KPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKL
Sbjct: 121 KPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKL 180
Query: 181 RDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKST 240
RDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKST
Sbjct: 181 RDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKST 240
Query: 241 LHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKF 300
LHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKF
Sbjct: 241 LHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKF 300
Query: 301 NWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFN 360
NWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFN
Sbjct: 301 NWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFN 360
Query: 361 SADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQ 420
SADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQ
Sbjct: 361 SADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQ 420
Query: 421 REWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVT 480
REWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVT
Sbjct: 421 REWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVT 480
Query: 481 NSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQD 540
NSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQD
Sbjct: 481 NSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQD 540
Query: 541 SINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTK 600
SINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTK
Sbjct: 541 SINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTK 600
Query: 601 TVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATH 660
TVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATH
Sbjct: 601 TVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATH 660
Query: 661 VFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYR 720
VFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYR
Sbjct: 661 VFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYR 720
Query: 721 EKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPR 780
EKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPR
Sbjct: 721 EKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPR 780
Query: 781 LFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQ 840
LFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQ
Sbjct: 781 LFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQ 840
Query: 841 GFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKI 900
GFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKI
Sbjct: 841 GFTNWNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKI 900
Query: 901 MAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLH 960
MAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLH
Sbjct: 901 MAQIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLH 960
Query: 961 KLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEK 1020
KLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEK
Sbjct: 961 KLGFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEK 1020
Query: 1021 AEKKKRGPKPSTQKRKMDGAPDGRGRKKKLKL 1052
AEKKKRGPKPSTQKRKMDGAPDGRGRKKKLKL
Sbjct: 1021 AEKKKRGPKPSTQKRKMDGAPDGRGRKKKLKL 1052
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 1727 bits (4474), Expect = 0.0
Identities = 837/1003 (83%), Positives = 913/1003 (91%), Gaps = 1/1003 (0%)
Query: 28 GSNSSNKGGPEGVAAQAVASAVSAGPADAEMEEIFDDASPGKQ-KEIQEPDPTYEEKMQT 86
G ++S + G A +A A+ + F K K +E DP YEEKM+
Sbjct: 30 GPSTSQEEGAAAAATEATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKA 89
Query: 87 DRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRT 146
DRA RFE+LLKQTELFAHFIQP+AQK+PTSPL MK GRPRIKKDEKQ+L+S GDYRHRRT
Sbjct: 90 DRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRT 149
Query: 147 EQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADE 206
EQEEDEELL+ES K +NVC RFE SPSYVK G LRDYQ+RGLNWLISLYENG+NGILADE
Sbjct: 150 EQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADE 209
Query: 207 MGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQ 266
MGLGKTLQTI+LLGY+KHYRNIPGPHMVLVPKSTLHNWM+EFKRWVP+LR +C +GDK+
Sbjct: 210 MGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDA 269
Query: 267 RAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE 326
RAAF+RD ++PGEWDVCVTSYEM+IKEKSVFKKF+WRYLVIDEAHRIKNEKSKLSEIVRE
Sbjct: 270 RAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE 329
Query: 327 FKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHM 386
FK+TNRLLLTGTPLQNNLHELW+LLNFLLPDVFNSADDFDSWFDT NCLGDQKLVERLH
Sbjct: 330 FKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHA 389
Query: 387 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 446
VL+PFLLRRIK DVEKSLPPKKE+KIY+GLSKMQREWYT+ILMKDID+LNS+GKMDKMRL
Sbjct: 390 VLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRL 449
Query: 447 LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
LNILMQLRKCCNHPYLFDGAEPGPPYTTD H+V+NSGKMVVLDKLL KLKEQGSRVLIFS
Sbjct: 450 LNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFS 509
Query: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI 566
QMTR+LDILEDYCMWR YEYCRLDGQTPH+ER+++I A+N PNS+KF+FMLSTRAGGLGI
Sbjct: 510 QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGI 569
Query: 567 NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR 626
NLA+ADVVILYDSDWNPQVDLQAMDRAHRIGQ K VRVFR ITDNTVEERIVERAE+KLR
Sbjct: 570 NLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLR 629
Query: 627 LDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDEDIDGILERGAKKTA 686
LDSIVIQQGRL+DQ NK+ K+EMLQMIRHGATHVFASKESE+TDEDI ILERG KKTA
Sbjct: 630 LDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTA 689
Query: 687 EMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDA 746
EMNE+L KMGESSLRNF MD E S+Y FEGEDYREKQK+ EWIEPPKRERKANYAVDA
Sbjct: 690 EMNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDA 749
Query: 747 YFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPEL 806
YFREALRVSEPK PKAPRPPKQPNVQDFQFFPPRLFELLEKEIL+YRKTIGYKVPRNP++
Sbjct: 750 YFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDI 809
Query: 807 PNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIE 866
PN A AQ+EEQ KID AE L EE EEKEKLLTQGFTNW KRDFNQFIKANEK+GRDDI+
Sbjct: 810 PNPALAQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDID 869
Query: 867 NIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDTKIG 926
NIAREVEGK+PEEV+EYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALD KI
Sbjct: 870 NIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIA 929
Query: 927 RYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCIRNSPQFRFD 986
RYKAPFHQLRI YGT+KGKNYTEEEDRFLICMLHK+GFD+ENVY+ELRQC+RN+PQFRFD
Sbjct: 930 RYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFD 989
Query: 987 WFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1029
WF+KSRTAME QRRCNTLI+LIE+ENME+EE+E+AEKKKR K
Sbjct: 990 WFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATK 1032
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 1720 bits (4455), Expect = 0.0
Identities = 838/1015 (82%), Positives = 913/1015 (89%), Gaps = 13/1015 (1%)
Query: 28 GSNSSNKGGPEGVAAQAVASAVSAGPADAEMEEIFDDASPGKQ-KEIQEPDPTYEEKMQT 86
G ++S + G A +A A+ + F K K +E DP YEEKM+
Sbjct: 30 GPSTSQEEGAAAAATEATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKA 89
Query: 87 DRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRT 146
DRA RFE+LLKQTELFAHFIQP+AQK+PTSPL MK GRPRIKKDEKQ+L+S GDYRHRRT
Sbjct: 90 DRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRT 149
Query: 147 EQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADE 206
EQEEDEELL+ES K +NVC RFE SPSYVK G LRDYQ+RGLNWLISLYENG+NGILADE
Sbjct: 150 EQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADE 209
Query: 207 MGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQ 266
MGLGKTLQTI+LLGY+KHYRNIPGPHMVLVPKSTLHNWM+EFKRWVP+LR +C +GDK+
Sbjct: 210 MGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDA 269
Query: 267 RAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE 326
RAAF+RD ++PGEWDVCVTSYEM+IKEKSVFKKF+WRYLVIDEAHRIKNEKSKLSEIVRE
Sbjct: 270 RAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE 329
Query: 327 FKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHM 386
FK+TNRLLLTGTPLQNNLHELW+LLNFLLPDVFNSADDFDSWFDT NCLGDQKLVERLH
Sbjct: 330 FKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHA 389
Query: 387 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 446
VL+PFLLRRIK DVEKSLPPKKE+KIY+GLSKMQREWYT+ILMKDID+LNS+GKMDKMRL
Sbjct: 390 VLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRL 449
Query: 447 LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
LNILMQLRKCCNHPYLFDGAEPGPPYTTD H+V+NSGKMVVLDKLL KLKEQGSRVLIFS
Sbjct: 450 LNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFS 509
Query: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQD------------SINAYNEPNSTKFV 554
QMTR+LDILEDYCMWR YEYCRLDGQTPH+ER+D +I A+N PNS+KF+
Sbjct: 510 QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFI 569
Query: 555 FMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 614
FMLSTRAGGLGINLA+ADVVILYDSDWNPQVDLQAMDRAHRIGQ K VRVFR ITDNTVE
Sbjct: 570 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 629
Query: 615 ERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDEDI 674
ERIVERAE+KLRLDSIVIQQGRL+DQ NK+ K+EMLQMIRHGATHVFASKESE+TDEDI
Sbjct: 630 ERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDI 689
Query: 675 DGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPP 734
ILERG KKTAEMNE+L KMGESSLRNF MD E S+Y FEGEDYREKQK+ EWIEPP
Sbjct: 690 TTILERGEKKTAEMNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPP 749
Query: 735 KRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRK 794
KRERKANYAVDAYFREALRVSEPK PKAPRPPKQPNVQDFQFFPPRLFELLEKEIL+YRK
Sbjct: 750 KRERKANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRK 809
Query: 795 TIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFI 854
TIGYKVPRNP++PN A AQ+EEQ KID AE L EE EEKEKLLTQGFTNW KRDFNQFI
Sbjct: 810 TIGYKVPRNPDIPNPALAQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFI 869
Query: 855 KANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRR 914
KANEK+GRDDI+NIAREVEGK+PEEV+EYSAVFWERCNELQDIEKIMAQIERGEARIQRR
Sbjct: 870 KANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRR 929
Query: 915 ISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELR 974
ISIKKALD KI RYKAPFHQLRI YGT+KGKNYTEEEDRFLICMLHK+GFD+ENVY+ELR
Sbjct: 930 ISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELR 989
Query: 975 QCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1029
QC+RN+PQFRFDWF+KSRTAME QRRCNTLI+LIE+ENME+EE+E+AEKKKR K
Sbjct: 990 QCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATK 1044
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 450 bits (1157), Expect = e-126
Identities = 262/647 (40%), Positives = 370/647 (57%), Gaps = 47/647 (7%)
Query: 63 DDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKP 122
D G+ + E +P YE ++D E ++ E QP A + PT P++ K
Sbjct: 632 DAPKAGQLEAWLEMNPGYEVAPRSDSE---ESGSEEEEEEEEEEQPQAAQPPTLPVEEKK 688
Query: 123 GRPRIKKDEKQNLLSVGDYRH--RRTEQEEDEE----------LLTESSKATNVCTRFED 170
P D+ +S D RH +Q+ D+E L + + A V R +
Sbjct: 689 KIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDK 744
Query: 171 SPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG 230
+ + G L+ YQ++GL WL+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I G
Sbjct: 745 QSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRING 804
Query: 231 PHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
P +++VP STL NW EF +W P++ V G R AFV L G+++V +T+YE +
Sbjct: 805 PFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYI 863
Query: 291 IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWS 349
IK+K + K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELW+
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 350 LLNFLLPDVFNSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKAD 399
LLNFLLP +F S F+ WF+ + +K ++ RLH VLRPFLLRR+K +
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Query: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLR 454
VE LP K E I +S +QR Y +L+ D + GK L+N +MQLR
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 455 KCCNHPYLFDGAEPG--------PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
K CNHPY+F E + L SGK +LD++LPKL+ +VL+F
Sbjct: 1044 KICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFC 1103
Query: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI 566
QMT ++ I+EDY +R ++Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+
Sbjct: 1104 QMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGL 1163
Query: 567 NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR 626
NL +AD VI++DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL
Sbjct: 1164 NLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1223
Query: 627 LDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDED 673
+D VIQ G + DQ + + LQ I +E E+ D++
Sbjct: 1224 VDQKVIQAG-MFDQKSSSHERRAFLQAILEHEEQ--DEEEDEVPDDE 1267
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 450 bits (1157), Expect = e-126
Identities = 262/647 (40%), Positives = 370/647 (57%), Gaps = 47/647 (7%)
Query: 63 DDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKP 122
D G+ + E +P YE ++D E ++ E QP A + PT P++ K
Sbjct: 632 DAPKAGQLEAWLEMNPGYEVAPRSDSE---ESGSEEEEEEEEEEQPQAAQPPTLPVEEKK 688
Query: 123 GRPRIKKDEKQNLLSVGDYRH--RRTEQEEDEE----------LLTESSKATNVCTRFED 170
P D+ +S D RH +Q+ D+E L + + A V R +
Sbjct: 689 KIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDK 744
Query: 171 SPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG 230
+ + G L+ YQ++GL WL+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I G
Sbjct: 745 QSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRING 804
Query: 231 PHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
P +++VP STL NW EF +W P++ V G R AFV L G+++V +T+YE +
Sbjct: 805 PFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYI 863
Query: 291 IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWS 349
IK+K + K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELW+
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 350 LLNFLLPDVFNSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKAD 399
LLNFLLP +F S F+ WF+ + +K ++ RLH VLRPFLLRR+K +
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Query: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLR 454
VE LP K E I +S +QR Y +L+ D + GK L+N +MQLR
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 455 KCCNHPYLFDGAEPG--------PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
K CNHPY+F E + L SGK +LD++LPKL+ +VL+F
Sbjct: 1044 KICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFC 1103
Query: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI 566
QMT ++ I+EDY +R ++Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+
Sbjct: 1104 QMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGL 1163
Query: 567 NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR 626
NL +AD VI++DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL
Sbjct: 1164 NLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1223
Query: 627 LDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDED 673
+D VIQ G + DQ + + LQ I +E E+ D++
Sbjct: 1224 VDQKVIQAG-MFDQKSSSHERRAFLQAILEHEEQ--DEEEDEVPDDE 1267
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 450 bits (1157), Expect = e-126
Identities = 262/647 (40%), Positives = 370/647 (57%), Gaps = 47/647 (7%)
Query: 63 DDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKP 122
D G+ + E +P YE ++D E ++ E QP A + PT P++ K
Sbjct: 632 DAPKAGQLEAWLEMNPGYEVAPRSDSE---ESGSEEEEEEEEEEQPQAAQPPTLPVEEKK 688
Query: 123 GRPRIKKDEKQNLLSVGDYRH--RRTEQEEDEE----------LLTESSKATNVCTRFED 170
P D+ +S D RH +Q+ D+E L + + A V R +
Sbjct: 689 KIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDK 744
Query: 171 SPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG 230
+ + G L+ YQ++GL WL+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I G
Sbjct: 745 QSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRING 804
Query: 231 PHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
P +++VP STL NW EF +W P++ V G R AFV L G+++V +T+YE +
Sbjct: 805 PFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYI 863
Query: 291 IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWS 349
IK+K + K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELW+
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 350 LLNFLLPDVFNSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKAD 399
LLNFLLP +F S F+ WF+ + +K ++ RLH VLRPFLLRR+K +
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Query: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLR 454
VE LP K E I +S +QR Y +L+ D + GK L+N +MQLR
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 455 KCCNHPYLFDGAEPG--------PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
K CNHPY+F E + L SGK +LD++LPKL+ +VL+F
Sbjct: 1044 KICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFC 1103
Query: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI 566
QMT ++ I+EDY +R ++Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+
Sbjct: 1104 QMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGL 1163
Query: 567 NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR 626
NL +AD VI++DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL
Sbjct: 1164 NLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1223
Query: 627 LDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDED 673
+D VIQ G + DQ + + LQ I +E E+ D++
Sbjct: 1224 VDQKVIQAG-MFDQKSSSHERRAFLQAILEHEEQ--DEEEDEVPDDE 1267
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 450 bits (1157), Expect = e-126
Identities = 262/647 (40%), Positives = 370/647 (57%), Gaps = 47/647 (7%)
Query: 63 DDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKP 122
D G+ + E +P YE ++D E ++ E QP A + PT P++ K
Sbjct: 632 DAPKAGQLEAWLEMNPGYEVAPRSDSE---ESGSEEEEEEEEEEQPQAAQPPTLPVEEKK 688
Query: 123 GRPRIKKDEKQNLLSVGDYRH--RRTEQEEDEE----------LLTESSKATNVCTRFED 170
P D+ +S D RH +Q+ D+E L + + A V R +
Sbjct: 689 KIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDK 744
Query: 171 SPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG 230
+ + G L+ YQ++GL WL+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I G
Sbjct: 745 QSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRING 804
Query: 231 PHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
P +++VP STL NW EF +W P++ V G R AFV L G+++V +T+YE +
Sbjct: 805 PFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYI 863
Query: 291 IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWS 349
IK+K + K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELW+
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 350 LLNFLLPDVFNSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKAD 399
LLNFLLP +F S F+ WF+ + +K ++ RLH VLRPFLLRR+K +
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Query: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLR 454
VE LP K E I +S +QR Y +L+ D + GK L+N +MQLR
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 455 KCCNHPYLFDGAEPG--------PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
K CNHPY+F E + L SGK +LD++LPKL+ +VL+F
Sbjct: 1044 KICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFC 1103
Query: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI 566
QMT ++ I+EDY +R ++Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+
Sbjct: 1104 QMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGL 1163
Query: 567 NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR 626
NL +AD VI++DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL
Sbjct: 1164 NLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1223
Query: 627 LDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDED 673
+D VIQ G + DQ + + LQ I +E E+ D++
Sbjct: 1224 VDQKVIQAG-MFDQKSSSHERRAFLQAILEHEEQ--DEEEDEVPDDE 1267
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 449 bits (1155), Expect = e-126
Identities = 259/628 (41%), Positives = 363/628 (57%), Gaps = 45/628 (7%)
Query: 63 DDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKP 122
D G+ + E +P YE ++D E ++ E QP A + PT P++ K
Sbjct: 632 DAPKAGQLEAWLEMNPGYEVAPRSDSE---ESGSEEEEEEEEEEQPQAAQPPTLPVEEKK 688
Query: 123 GRPRIKKDEKQNLLSVGDYRH--RRTEQEEDEE----------LLTESSKATNVCTRFED 170
P D+ +S D RH +Q+ D+E L + + A V R +
Sbjct: 689 KIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDK 744
Query: 171 SPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG 230
+ + G L+ YQ++GL WL+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I G
Sbjct: 745 QSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRING 804
Query: 231 PHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
P +++VP STL NW EF +W P++ V G R AFV L G+++V +T+YE +
Sbjct: 805 PFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYI 863
Query: 291 IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWS 349
IK+K + K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELW+
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 350 LLNFLLPDVFNSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKAD 399
LLNFLLP +F S F+ WF+ + +K ++ RLH VLRPFLLRR+K +
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Query: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLR 454
VE LP K E I +S +QR Y +L+ D + GK L+N +MQLR
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 455 KCCNHPYLFDGAEPG--------PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
K CNHPY+F E + L SGK +LD++LPKL+ +VL+F
Sbjct: 1044 KICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFC 1103
Query: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI 566
QMT ++ I+EDY +R ++Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+
Sbjct: 1104 QMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGL 1163
Query: 567 NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR 626
NL +AD VI++DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL
Sbjct: 1164 NLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1223
Query: 627 LDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
+D VIQ G + DQ + + LQ I
Sbjct: 1224 VDQKVIQAG-MFDQKSSSHERRAFLQAI 1250
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 449 bits (1155), Expect = e-126
Identities = 259/628 (41%), Positives = 363/628 (57%), Gaps = 45/628 (7%)
Query: 63 DDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKP 122
D G+ + E +P YE ++D E ++ E QP A + PT P++ K
Sbjct: 632 DAPKAGQLEAWLEMNPGYEVAPRSDSE---ESGSEEEEEEEEEEQPQAAQPPTLPVEEKK 688
Query: 123 GRPRIKKDEKQNLLSVGDYRH--RRTEQEEDEE----------LLTESSKATNVCTRFED 170
P D+ +S D RH +Q+ D+E L + + A V R +
Sbjct: 689 KIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDK 744
Query: 171 SPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG 230
+ + G L+ YQ++GL WL+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I G
Sbjct: 745 QSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRING 804
Query: 231 PHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
P +++VP STL NW EF +W P++ V G R AFV L G+++V +T+YE +
Sbjct: 805 PFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYI 863
Query: 291 IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWS 349
IK+K + K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELW+
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 350 LLNFLLPDVFNSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKAD 399
LLNFLLP +F S F+ WF+ + +K ++ RLH VLRPFLLRR+K +
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Query: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLR 454
VE LP K E I +S +QR Y +L+ D + GK L+N +MQLR
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 455 KCCNHPYLFDGAEPG--------PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
K CNHPY+F E + L SGK +LD++LPKL+ +VL+F
Sbjct: 1044 KICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFC 1103
Query: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI 566
QMT ++ I+EDY +R ++Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+
Sbjct: 1104 QMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGL 1163
Query: 567 NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR 626
NL +AD VI++DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL
Sbjct: 1164 NLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1223
Query: 627 LDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
+D VIQ G + DQ + + LQ I
Sbjct: 1224 VDQKVIQAG-MFDQKSSSHERRAFLQAI 1250
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 449 bits (1155), Expect = e-126
Identities = 259/628 (41%), Positives = 363/628 (57%), Gaps = 45/628 (7%)
Query: 63 DDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKP 122
D G+ + E +P YE ++D E ++ E QP A + PT P++ K
Sbjct: 632 DAPKAGQLEAWLEMNPGYEVAPRSDSE---ESGSEEEEEEEEEEQPQAAQPPTLPVEEKK 688
Query: 123 GRPRIKKDEKQNLLSVGDYRH--RRTEQEEDEE----------LLTESSKATNVCTRFED 170
P D+ +S D RH +Q+ D+E L + + A V R +
Sbjct: 689 KIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDK 744
Query: 171 SPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG 230
+ + G L+ YQ++GL WL+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I G
Sbjct: 745 QSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRING 804
Query: 231 PHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
P +++VP STL NW EF +W P++ V G R AFV L G+++V +T+YE +
Sbjct: 805 PFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYI 863
Query: 291 IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWS 349
IK+K + K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELW+
Sbjct: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
Query: 350 LLNFLLPDVFNSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKAD 399
LLNFLLP +F S F+ WF+ + +K ++ RLH VLRPFLLRR+K +
Sbjct: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
Query: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLR 454
VE LP K E I +S +QR Y +L+ D + GK L+N +MQLR
Sbjct: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
Query: 455 KCCNHPYLFDGAEPG--------PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
K CNHPY+F E + L SGK +LD++LPKL+ +VL+F
Sbjct: 1044 KICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFC 1103
Query: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI 566
QMT ++ I+EDY +R ++Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+
Sbjct: 1104 QMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGL 1163
Query: 567 NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR 626
NL +AD VI++DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL
Sbjct: 1164 NLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1223
Query: 627 LDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
+D VIQ G + DQ + + LQ I
Sbjct: 1224 VDQKVIQAG-MFDQKSSSHERRAFLQAI 1250
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 449 bits (1154), Expect = e-126
Identities = 340/1022 (33%), Positives = 525/1022 (51%), Gaps = 145/1022 (14%)
Query: 96 LKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIK---KDEK------QNLLSVGDYRHRRT 146
L QT+ AH +PA P K G P + +DE QN + D H R
Sbjct: 393 LGQTDFPAHSRKPAPSNEPEYLCKWM-GLPYSECSWEDEALIGKKFQNCI---DSFHSRN 448
Query: 147 EQEEDEELLTESSKATNVCTRF---EDSPSYVKWG--KLRDYQVRGLNWLISLYENGING 201
+ + T KA RF + P+Y+ +LRDYQ+ GLNWL + +
Sbjct: 449 NSKT---IPTRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSV 505
Query: 202 ILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLI 261
ILADEMGLGKT+QTIS L Y+ H + GP +++VP STL +W EF+ W P + V I
Sbjct: 506 ILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYI 565
Query: 262 GDKEQRAA-----FVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNE 316
GD R ++ +++ +T+YE+L+K+K+V NW +L +DEAHR+KN+
Sbjct: 566 GDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKND 625
Query: 317 KSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLG 376
S L + + +FK+ +RLL+TGTPLQN+L ELWSLL+F++P+ F +DF+ ++ G
Sbjct: 626 DSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE----DHGKG 681
Query: 377 DQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILN 436
+ + LH VL PFLLRR+K DVEKSLP K E + V +S +Q+++Y IL ++ L
Sbjct: 682 RENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALA 741
Query: 437 SAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTD---MHLVTNSGKMVVLDKLLP 493
+ LNI+M+L+KCCNH YL E + L+ +SGK+++LDKLL
Sbjct: 742 KGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLT 801
Query: 494 KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF 553
+L+E+G+RVLIFSQM R+LDIL +Y ++Y + RLDG + R+ +++ +N S F
Sbjct: 802 RLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF 861
Query: 554 VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613
F+LSTRAGGLGINLA+AD V+++DSDWNPQ DLQA RAHRIGQ K V ++R +T TV
Sbjct: 862 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 921
Query: 614 EERIVERAEMKLRLDSIVIQQ----GRLV------DQNLNKIGKDEMLQMIRHGATHVF- 662
EE I+ERA+ K+ LD +VIQ+ GR + N N K+E+ +++ GA +F
Sbjct: 922 EEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFK 981
Query: 663 --ASKESEITDEDIDGILERGAKKTAEMNEKLSK--MGESSLRNF-TMDTESSVYNFEGE 717
+ESE + DID IL + E++ + + + + NF TM+ E + E
Sbjct: 982 ELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEEL---EER 1038
Query: 718 DYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFF 777
+++ +I E + + E + + Y +R S KA Q N D
Sbjct: 1039 PHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKA--------QTNDSD---- 1086
Query: 778 PPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEK--- 834
+ + QAQ+ + + +S +D++ + +
Sbjct: 1087 --------------------------SDTESKRQAQRSSASESETEDSDDDKKPKRRGRP 1120
Query: 835 ---EKLLTQGFTNWNKRDFNQFIKANEKWG--RDDIENIAREVE--GKTPEEVIEYSAVF 887
K L +GFT+ + +FIKA +K+G + +E IAR+ E K+ ++ +
Sbjct: 1121 RSVRKDLVEGFTD---AEIRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELI 1177
Query: 888 WERC-NELQDI-EKIMAQIERGEARIQRR-----ISIKKALDTKIGRYKAPFHQLRISYG 940
C + +Q+ E++ G+ +RR IS + I +++ F L S
Sbjct: 1178 HNSCVSAMQEYEEQLKENASEGKGPGKRRGPTIKISGVQVNVKSIIQHEEEFEMLHKSIP 1237
Query: 941 TNKGKNYTEEEDRF-LICMLHKLGFDKE-NVYDELR-------------QCIRNSPQFRF 985
+ EE+ ++ L C + FD E V D+ R + I+ P+ +
Sbjct: 1238 VD-----PEEKKKYCLTCRVKAAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKL 1292
Query: 986 -DWFL-----KSRTAMELQRRCNTLITLIERENMELEEK------EKAEKKKRGPKPSTQ 1033
D L K +LQ R + L+ L+ + LE+K E+A+ KKR P+ +
Sbjct: 1293 TDKILPVETDKKPQGKQLQTRADYLLKLLRK---GLEKKGAVTGGEEAKLKKRKPRVKKE 1349
Query: 1034 KR 1035
+
Sbjct: 1350 NK 1351
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 434 bits (1115), Expect = e-121
Identities = 244/637 (38%), Positives = 363/637 (56%), Gaps = 64/637 (10%)
Query: 70 QKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKK 129
+ + +E D YEE+ + + ++R ++TE + + P + +
Sbjct: 632 RSDSEESDSDYEEEDEEEESSR-----QETE---------------EKILLDPNSEEVSE 671
Query: 130 DEKQNLLSVGDYRHRRTEQEEDEELLTESSK---------ATNVCTRFEDSPSYVKWGKL 180
+ + ++ +Q+ D+E + S A + R E + + G L
Sbjct: 672 KDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTL 724
Query: 181 RDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKST 240
+ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ + GP++++VP ST
Sbjct: 725 KHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLST 784
Query: 241 LHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKF 300
L NW EF +W P++ + G R + V L G+++V +T+YE +IK+K + K
Sbjct: 785 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 843
Query: 301 NWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
W+Y+++DE HR+KN KL++++ + R+LLTGTPLQN L ELW+LLNFLLP +F
Sbjct: 844 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 903
Query: 360 NSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKADVEKSLPPKKE 409
S F+ WF+ + ++ ++ RLH VLRPFLLRR+K +VE LP K E
Sbjct: 904 KSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVE 963
Query: 410 VKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD 464
I +S +Q+ Y IL+ D + GK L+N +MQLRK CNHPY+F
Sbjct: 964 YVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1023
Query: 465 GAEPGPP----YTTDM----HLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILE 516
E Y+ + L SGK +LD++LPKL+ RVL+F QMT ++ I+E
Sbjct: 1024 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1083
Query: 517 DYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVIL 576
DY +RN+ Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+NL AD V++
Sbjct: 1084 DYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVI 1143
Query: 577 YDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636
+DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL +D VIQ G
Sbjct: 1144 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG- 1202
Query: 637 LVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDED 673
+ DQ + + LQ I +E E+ D++
Sbjct: 1203 MFDQKSSSHERRAFLQAILEHEEE--NEEEDEVPDDE 1237
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 434 bits (1115), Expect = e-121
Identities = 244/637 (38%), Positives = 363/637 (56%), Gaps = 64/637 (10%)
Query: 70 QKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKK 129
+ + +E D YEE+ + + ++R ++TE + + P + +
Sbjct: 632 RSDSEESDSDYEEEDEEEESSR-----QETE---------------EKILLDPNSEEVSE 671
Query: 130 DEKQNLLSVGDYRHRRTEQEEDEELLTESSK---------ATNVCTRFEDSPSYVKWGKL 180
+ + ++ +Q+ D+E + S A + R E + + G L
Sbjct: 672 KDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSALLINGTL 724
Query: 181 RDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKST 240
+ YQ++GL W++SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ + GP++++VP ST
Sbjct: 725 KHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLST 784
Query: 241 LHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKF 300
L NW EF +W P++ + G R + V L G+++V +T+YE +IK+K + K
Sbjct: 785 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 843
Query: 301 NWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
W+Y+++DE HR+KN KL++++ + R+LLTGTPLQN L ELW+LLNFLLP +F
Sbjct: 844 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 903
Query: 360 NSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKADVEKSLPPKKE 409
S F+ WF+ + ++ ++ RLH VLRPFLLRR+K +VE LP K E
Sbjct: 904 KSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVE 963
Query: 410 VKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD 464
I +S +Q+ Y IL+ D + GK L+N +MQLRK CNHPY+F
Sbjct: 964 YVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQ 1023
Query: 465 GAEPGPP----YTTDM----HLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILE 516
E Y+ + L SGK +LD++LPKL+ RVL+F QMT ++ I+E
Sbjct: 1024 HIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIME 1083
Query: 517 DYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVIL 576
DY +RN+ Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+NL AD V++
Sbjct: 1084 DYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVI 1143
Query: 577 YDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGR 636
+DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL +D VIQ G
Sbjct: 1144 FDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG- 1202
Query: 637 LVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDED 673
+ DQ + + LQ I +E E+ D++
Sbjct: 1203 MFDQKSSSHERRAFLQAILEHEEE--NEEEDEVPDDE 1237
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 431 bits (1107), Expect = e-120
Identities = 245/596 (41%), Positives = 364/596 (61%), Gaps = 40/596 (6%)
Query: 172 PSYV---KWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNI 228
PSY+ + +LRDYQ+ GLNWL + G + ILADEMGLGKT+QTIS L Y+ H +
Sbjct: 470 PSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQL 529
Query: 229 PGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEW-------- 280
GP +++VP STL +W E + W + +V +GD R +++ EW
Sbjct: 530 YGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSR-----NMIRTHEWTHHQTKRL 584
Query: 281 --DVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGT 338
++ +T+YE+L+K+K+ NW ++ +DEAHR+KN+ S L + + +FK+ +RLL+TGT
Sbjct: 585 KFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGT 644
Query: 339 PLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKA 398
PLQN+L ELWSLL+F++P+ F+S +DF+ + G + LH L PFLLRR+K
Sbjct: 645 PLQNSLKELWSLLHFIMPEKFSSWEDFEE----EHGKGREYGYASLHKELEPFLLRRVKK 700
Query: 399 DVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCN 458
DVEKSLP K E + + +S +Q+++Y IL ++ L+ K LNI+M+L+KCCN
Sbjct: 701 DVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCN 760
Query: 459 HPYLFDGAEPGPPYTTD---MHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDIL 515
H YL + Y HL+ +SGK+++LDKLL +L+E+G+RVLIFSQM R+LDIL
Sbjct: 761 HCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDIL 820
Query: 516 EDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVI 575
+Y +R + + RLDG + R+ +++ +N S F F+LSTRAGGLGINLA+AD V+
Sbjct: 821 AEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVV 880
Query: 576 LYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ- 634
++DSDWNPQ DLQA RAHRIGQ K V ++R +T +VEE I+ERA+ K+ LD +VIQ+
Sbjct: 881 IFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRM 940
Query: 635 ---GRLV------DQNLNKIGKDEMLQMIRHGATHVF---ASKESEITDEDIDGILERGA 682
G+ V + K+E+ +++ GA +F +E E + DID IL+R
Sbjct: 941 DTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRA- 999
Query: 683 KKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRER 738
+T E +G+ L F + S++ + E E+ + E I +R R
Sbjct: 1000 -ETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRR 1054
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 429 bits (1104), Expect = e-120
Identities = 271/703 (38%), Positives = 390/703 (55%), Gaps = 52/703 (7%)
Query: 176 KWG----KLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGP 231
+WG LR YQ+ G+NWL + IL DEMGLGKT QTI+L Y+ N GP
Sbjct: 38 QWGLTGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGP 97
Query: 232 HMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLI 291
++L P S L NW E +R+ P L V GDKE+RA +D+ + V +T+YE+ +
Sbjct: 98 FLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEICL 157
Query: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
K+ S K F W LV+DEAHR+KN+ S L + + EF LLLTGTP+QN+L EL+SLL
Sbjct: 158 KDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLL 217
Query: 352 NFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVK 411
+F+ PD+F+ + D + + + LH +L+PFLLRR+KA+V LP K EV
Sbjct: 218 SFVEPDLFSKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELPKKTEVV 277
Query: 412 IYVGLSKMQREWYTRILMKDIDIL-NSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGP 470
IY G+S +Q+++Y ILMKD+D N K K++L NIL QLRKC +HPYLFDG EP
Sbjct: 278 IYHGMSALQKKYYKAILMKDLDAFENETAK--KVKLQNILSQLRKCVDHPYLFDGVEP-E 334
Query: 471 PYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLD 530
P+ HL SGK+ +LDKLL L G RVL+FSQMT++LDIL+DY +R Y Y R+D
Sbjct: 335 PFEVGDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVD 394
Query: 531 GQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 590
G +ER +I + + FVF+LSTRAGG+G+NL AD VI DSD+NPQ DLQA
Sbjct: 395 GSVRGEERHLAIKNFGQ--QPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAA 452
Query: 591 DRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEM 650
RAHRIGQ K+V+V R I +TVEE + +A KL+L +++I+ G K D
Sbjct: 453 ARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFT-LGAQKPAADAD 511
Query: 651 LQM---IRHGATHVFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDT 707
LQ+ ++ G + AS+ S + + D++ IL G K + E R+ +
Sbjct: 512 LQLSEILKFGLDKLLASEGSTMDEIDLESIL--GETKDGQWVSDALPAAEGGSRD-QEEG 568
Query: 708 ESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPK 767
++ +Y FEG+DY + EP K +RK+ F + + + + KA + +
Sbjct: 569 KNHMYLFEGKDYSK----------EPSKEDRKS-------FEQLVNLQKTLLEKASQEGR 611
Query: 768 QPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKE---EQLKIDEAE 824
+ P L T +V EL + + ++E ++ ++ E +
Sbjct: 612 SLRNKGSVLIPG----------LVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEK 661
Query: 825 SLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRDDIEN 867
EE E K+K+ W ++ F +E+ +D+EN
Sbjct: 662 KRQKEEAEHKKKMAW-----WESNNYQSFCLPSEESEPEDLEN 699
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 423 bits (1087), Expect = e-118
Identities = 231/573 (40%), Positives = 348/573 (60%), Gaps = 39/573 (6%)
Query: 150 EDEELLTESSKATNVCTRFEDSPSYVK--WGKLRDYQVRGLNWLISLYENGINGILADEM 207
+D++ + + +F+ P Y+ G L YQ+ GLNWL + G + ILADEM
Sbjct: 668 DDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEM 727
Query: 208 GLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQR 267
GLGKT+QTI L + + GP++V P ST+ NW EF+ W P V GDKE R
Sbjct: 728 GLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESR 787
Query: 268 A-------AFVRDVLLPGE------------WDVCVTSYEMLIKEKSVFKKFNWRYLVID 308
+ +F + + G+ + V +TSYE++ ++++ W LV+D
Sbjct: 788 SVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVD 847
Query: 309 EAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSW 368
EAHR+KN +SK ++ +K +LLLTGTPLQNNL EL+ LLNFL P+ FN+ + F
Sbjct: 848 EAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE 907
Query: 369 FDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL 428
F + + +++LH +L P +LRR+KADV K++P K E+ + V LS+MQ+++Y IL
Sbjct: 908 FAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFIL 964
Query: 429 MKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTD-----MHLVTNSG 483
++ + LNS G +++ LLNI+M L+KCCNHPYLF A P + LV +SG
Sbjct: 965 TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSG 1024
Query: 484 KMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSIN 543
K+++L K+L KL+++G RVLIFSQMT++LD+LED+ + Y+Y R+DG RQ++I+
Sbjct: 1025 KLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAID 1084
Query: 544 AYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVR 603
+N P + +F F+LSTRAGGLGINLATAD VI+YDSDWNP D+QA RAHRIGQ K V
Sbjct: 1085 RFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVM 1144
Query: 604 VFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFA 663
++RF+T +VEERI + A+ K+ L +V++ G + + K E+ +++ G +F
Sbjct: 1145 IYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKSGSMTKQELDDILKFGTEELF- 1201
Query: 664 SKESEITDEDIDGILERGAKKTAEMNEKLSKMG 696
+D++G++ +G + + + S G
Sbjct: 1202 -------KDDVEGMMSQGQRPVTPIPDVQSSKG 1227
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 422 bits (1085), Expect = e-118
Identities = 276/794 (34%), Positives = 422/794 (53%), Gaps = 79/794 (9%)
Query: 141 YRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVK--WGKLRDYQVRGLNWLISLYENG 198
Y+ ++ E + D SS + ++E P ++ G L YQ+ GLNWL + G
Sbjct: 698 YKKKKKELQGDGP---PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQG 754
Query: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSV 258
+ ILADEMGLGKT+QTI L + + GP +V P ST+ NW EF+ W P V
Sbjct: 755 TDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVV 814
Query: 259 CLIGDKEQRA-------AFVRDVLLPGE------------WDVCVTSYEMLIKEKSVFKK 299
GDK+ RA +F + + G+ + V +TSYE++ +++
Sbjct: 815 TYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGS 874
Query: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+ LLNFL P+ F
Sbjct: 875 IRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 934
Query: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419
N+ + F F + + +++LH +L P +LRR+KADV K++P K E+ + V LS M
Sbjct: 935 NNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPM 991
Query: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMH- 477
Q+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A P + +
Sbjct: 992 QKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYE 1051
Query: 478 ---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTP 534
L+ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + Y+Y R+DG
Sbjct: 1052 GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGIT 1111
Query: 535 HDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAH 594
RQ++I+ +N P + +F F+LSTRAGGLGINLATAD VI++DSDWNP D+QA RAH
Sbjct: 1112 GALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAH 1171
Query: 595 RIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
RIGQ V ++RF+T +VEERI + A+ K+ L +V++ G + + K E+ ++
Sbjct: 1172 RIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAGSMSKQELDDIL 1229
Query: 655 RHGATHVFASK-ESEITDED----------IDGILERGAKKTAE-----MNEKLSKMGES 698
+ G +F + E E +ED I +L+R T + MNE LS
Sbjct: 1230 KFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF--- 1286
Query: 699 SLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPK 758
+ + + E + E E ++++ ++P E+ + + + R
Sbjct: 1287 KVAQYVVREEDKIEEIEREIIKQEEN------VDPDYWEKLLRHHYEQQQEDLAR----N 1336
Query: 759 APKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQL 818
K R KQ N D + + + E + PE + Q + QL
Sbjct: 1337 LGKGKRVRKQVNYND----AAQEDQDNQSEYSVGSEEEDEDFDERPE----GRRQSKRQL 1388
Query: 819 KIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRD-----DIENIAREVE 873
+ ++ + L + GF N R F+ A +WG + + R++
Sbjct: 1389 RNEKDKPLPPLLARVGGNIEVLGF---NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLR 1445
Query: 874 GKTPEEVIEYSAVF 887
GKT +E Y ++F
Sbjct: 1446 GKTEKEFKAYVSLF 1459
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 422 bits (1085), Expect = e-118
Identities = 276/794 (34%), Positives = 422/794 (53%), Gaps = 79/794 (9%)
Query: 141 YRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVK--WGKLRDYQVRGLNWLISLYENG 198
Y+ ++ E + D SS + ++E P ++ G L YQ+ GLNWL + G
Sbjct: 698 YKKKKKELQGDGP---PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQG 754
Query: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSV 258
+ ILADEMGLGKT+QTI L + + GP +V P ST+ NW EF+ W P V
Sbjct: 755 TDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVV 814
Query: 259 CLIGDKEQRA-------AFVRDVLLPGE------------WDVCVTSYEMLIKEKSVFKK 299
GDK+ RA +F + + G+ + V +TSYE++ +++
Sbjct: 815 TYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGS 874
Query: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+ LLNFL P+ F
Sbjct: 875 IRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 934
Query: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419
N+ + F F + + +++LH +L P +LRR+KADV K++P K E+ + V LS M
Sbjct: 935 NNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPM 991
Query: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMH- 477
Q+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A P + +
Sbjct: 992 QKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYE 1051
Query: 478 ---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTP 534
L+ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + Y+Y R+DG
Sbjct: 1052 GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGIT 1111
Query: 535 HDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAH 594
RQ++I+ +N P + +F F+LSTRAGGLGINLATAD VI++DSDWNP D+QA RAH
Sbjct: 1112 GALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAH 1171
Query: 595 RIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
RIGQ V ++RF+T +VEERI + A+ K+ L +V++ G + + K E+ ++
Sbjct: 1172 RIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAGSMSKQELDDIL 1229
Query: 655 RHGATHVFASK-ESEITDED----------IDGILERGAKKTAE-----MNEKLSKMGES 698
+ G +F + E E +ED I +L+R T + MNE LS
Sbjct: 1230 KFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF--- 1286
Query: 699 SLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPK 758
+ + + E + E E ++++ ++P E+ + + + R
Sbjct: 1287 KVAQYVVREEDKIEEIEREIIKQEEN------VDPDYWEKLLRHHYEQQQEDLAR----N 1336
Query: 759 APKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQL 818
K R KQ N D + + + E + PE + Q + QL
Sbjct: 1337 LGKGKRVRKQVNYND----AAQEDQDNQSEYSVGSEEEDEDFDERPE----GRRQSKRQL 1388
Query: 819 KIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRD-----DIENIAREVE 873
+ ++ + L + GF N R F+ A +WG + + R++
Sbjct: 1389 RNEKDKPLPPLLARVGGNIEVLGF---NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLR 1445
Query: 874 GKTPEEVIEYSAVF 887
GKT +E Y ++F
Sbjct: 1446 GKTEKEFKAYVSLF 1459
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 422 bits (1085), Expect = e-118
Identities = 276/794 (34%), Positives = 422/794 (53%), Gaps = 79/794 (9%)
Query: 141 YRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVK--WGKLRDYQVRGLNWLISLYENG 198
Y+ ++ E + D SS + ++E P ++ G L YQ+ GLNWL + G
Sbjct: 757 YKKKKKELQGDGP---PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQG 813
Query: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSV 258
+ ILADEMGLGKT+QTI L + + GP +V P ST+ NW EF+ W P V
Sbjct: 814 TDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVV 873
Query: 259 CLIGDKEQRA-------AFVRDVLLPGE------------WDVCVTSYEMLIKEKSVFKK 299
GDK+ RA +F + + G+ + V +TSYE++ +++
Sbjct: 874 TYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGS 933
Query: 300 FNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVF 359
W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+ LLNFL P+ F
Sbjct: 934 IRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERF 993
Query: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419
N+ + F F + + +++LH +L P +LRR+KADV K++P K E+ + V LS M
Sbjct: 994 NNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPM 1050
Query: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMH- 477
Q+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A P + +
Sbjct: 1051 QKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYE 1110
Query: 478 ---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTP 534
L+ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + Y+Y R+DG
Sbjct: 1111 GGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGIT 1170
Query: 535 HDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAH 594
RQ++I+ +N P + +F F+LSTRAGGLGINLATAD VI++DSDWNP D+QA RAH
Sbjct: 1171 GALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAH 1230
Query: 595 RIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
RIGQ V ++RF+T +VEERI + A+ K+ L +V++ G + + K E+ ++
Sbjct: 1231 RIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAGSMSKQELDDIL 1288
Query: 655 RHGATHVFASK-ESEITDED----------IDGILERGAKKTAE-----MNEKLSKMGES 698
+ G +F + E E +ED I +L+R T + MNE LS
Sbjct: 1289 KFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSF--- 1345
Query: 699 SLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPK 758
+ + + E + E E ++++ ++P E+ + + + R
Sbjct: 1346 KVAQYVVREEDKIEEIEREIIKQEEN------VDPDYWEKLLRHHYEQQQEDLAR----N 1395
Query: 759 APKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRNPELPNAAQAQKEEQL 818
K R KQ N D + + + E + PE + Q + QL
Sbjct: 1396 LGKGKRVRKQVNYND----AAQEDQDNQSEYSVGSEEEDEDFDERPE----GRRQSKRQL 1447
Query: 819 KIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFIKANEKWGRD-----DIENIAREVE 873
+ ++ + L + GF N R F+ A +WG + + R++
Sbjct: 1448 RNEKDKPLPPLLARVGGNIEVLGF---NTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLR 1504
Query: 874 GKTPEEVIEYSAVF 887
GKT +E Y ++F
Sbjct: 1505 GKTEKEFKAYVSLF 1518
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 415 bits (1066), Expect = e-115
Identities = 250/655 (38%), Positives = 373/655 (56%), Gaps = 66/655 (10%)
Query: 167 RFEDSPSYVK--WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKH 224
++E P Y+ G L YQ+ GLNWL + G + ILADEMGLGKT+QT L +
Sbjct: 711 KYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYK 770
Query: 225 YRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRA-------AFVRDVLLP 277
+ GP +V P ST+ NW EF+ W P + V +GDK+ RA +F + +
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRG 830
Query: 278 GE------------WDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR 325
G+ + V +TSYE++ + ++ +W L++DEAHR+KN +SK ++
Sbjct: 831 GKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLN 890
Query: 326 EFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLH 385
+ ++LLLTGTPLQNNL EL+ LLNFL P+ F++ + F F + + +++LH
Sbjct: 891 GYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFAD---IAKEDQIKKLH 947
Query: 386 MVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMR 445
+L P +LRR+KADV K++P K E+ + V LS MQ+++Y IL ++ + LN+ G +++
Sbjct: 948 DMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQVS 1007
Query: 446 LLNILMQLRKCCNHPYLFD-GAEPGPPYTTDMH----LVTNSGKMVVLDKLLPKLKEQGS 500
LLN++M L+KCCNHPYLF A P M+ L+ SGK+++L K+L LKE G
Sbjct: 1008 LLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGH 1067
Query: 501 RVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTR 560
RVLIFSQMT++LD+LED+ Y+Y R+DG + RQ++I+ +N P + +F F+LSTR
Sbjct: 1068 RVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTR 1127
Query: 561 AGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVER 620
AGGLGINLATAD VI+YDSDWNP D+QA RAHRIGQ K V ++RF+T +VEERI +
Sbjct: 1128 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQV 1187
Query: 621 AEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFA---------SKESE--- 668
A+ K+ L +V++ G + + K E+ +++ G +F +KE E
Sbjct: 1188 AKKKMMLTHLVVRPG--LGSKTGSMSKQELDDILKFGTEELFKDEATDGGGDNKEGEDSS 1245
Query: 669 ---ITDEDIDGILERGAKKTAE-----MNEKLS--KMGESSLRNFTMDTESSVYNFEGED 718
D+ I+ +L+R +T + MNE LS K+ + +R M E V
Sbjct: 1246 VIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVVREEEMGEEEEV------- 1298
Query: 719 YREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQD 773
E++ I E ++P E+ + + + R K R KQ N D
Sbjct: 1299 --EREIIKQEESVDPDYWEKLLRHHYEQQQEDLAR----NLGKGKRIRKQVNYND 1347
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 410 bits (1055), Expect = e-114
Identities = 247/593 (41%), Positives = 352/593 (59%), Gaps = 38/593 (6%)
Query: 139 GDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENG 198
G R + Q EL + + + E S Y +LR+YQ+ G+NWL+ + N
Sbjct: 491 GKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNR 550
Query: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVP----- 253
N ILADEMGLGKT+Q+I+ L + + I GP +V+ P ST+ NW EF W
Sbjct: 551 QNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLSTITNWEREFNTWTEMNTIV 609
Query: 254 ---TLRSVCLIGDKEQRAAFVRDVLLPG--EWDVCVTSYEMLIKEKSVFKKFNWRYLVID 308
+L S +I E R L+PG ++D +T++EM++ + ++ WR ++ID
Sbjct: 610 YHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIID 669
Query: 309 EAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSW 368
EAHR+KN KL + ++ +++LLTGTPLQN + EL+SLL+FL P F S +F
Sbjct: 670 EAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKD 729
Query: 369 FDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL 428
F L ++ V++L +L+P +LRR+K DVEK+L PK+E I V L+ +Q+++Y IL
Sbjct: 730 FGD---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAIL 786
Query: 429 MKDIDILNS-AGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGP-----------PYTTDM 476
K+ L+ AG + LLN +M+LRKCCNHPYL +GAE P+ D
Sbjct: 787 EKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH--DF 844
Query: 477 HL---VTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQT 533
HL V ++GK+V++DKLLPKLK G +VLIFSQM R LDILEDY + R Y Y R+DG+
Sbjct: 845 HLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRV 904
Query: 534 PHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRA 593
+ RQ +I+ +++P+S +FVF+L TRAGGLGINL AD I++DSDWNPQ DLQA R
Sbjct: 905 RGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARC 964
Query: 594 HRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKI---GKDEM 650
HRIGQ+K V+V+R IT N+ E + ++A +KL LD V+Q D N+ I K E+
Sbjct: 965 HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEI 1024
Query: 651 LQMIRHGATHVFASKE---SEITDEDIDGI-LERGAKKTAEMNEKLSKMGESS 699
++R GA ++ S+ +EDID I L R T E K S ++S
Sbjct: 1025 EDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKAS 1077
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 402 bits (1034), Expect = e-112
Identities = 247/655 (37%), Positives = 370/655 (56%), Gaps = 51/655 (7%)
Query: 161 ATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLG 220
A++ + E S Y +LR+YQ+ G+NWL+ + N N ILADEMGLGKT+Q+I+ L
Sbjct: 442 ASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLS 501
Query: 221 YMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDK------EQRAAFVRDV 274
+ R I GP +++ P ST+ NW EF+ W + ++ G + +Q RD
Sbjct: 502 EI-FLRGIHGPFLIIAPLSTITNWEREFRTWTE-MNAIVYHGSQISRQMIQQYEMVYRDA 559
Query: 275 L---LPG--EWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKT 329
L G ++ V +T++EM++ + KK +W ++IDEAHR+KN KL E ++
Sbjct: 560 QGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMAL 619
Query: 330 TNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLR 389
+++LLTGTPLQN++ EL+SLLNFL P F S F F L ++ V++L +L+
Sbjct: 620 EHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD---LKTEEQVKKLQSILK 676
Query: 390 PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKM-RLLN 448
P +LRR+K DVEK+L PK+E I V L+ +Q+++Y IL K+ L M L+N
Sbjct: 677 PMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNMPNLIN 736
Query: 449 ILMQLRKCCNHPYLFDGAE------------PGPPYTTDMHLVTNSGKMVVLDKLLPKLK 496
+M+LRKCCNHPYL +GAE P P ++ +GK+V++DKLLPKL
Sbjct: 737 TMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLI 796
Query: 497 EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFM 556
G +VLIFSQM R LDILEDY + R Y Y R+DG+ + RQ +I+ + +P+S +FVF+
Sbjct: 797 AGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFL 856
Query: 557 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEER 616
L TRAGGLGINL AD I++DSDWNPQ DLQA R HRIGQ+K V+V+R IT N+ E
Sbjct: 857 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYERE 916
Query: 617 IVERAEMKLRLDSIVIQQ-----GRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITD 671
+ ++A +KL LD V+Q G Q L+K+ +++L+ +GA + S+ +
Sbjct: 917 MFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCE 976
Query: 672 EDIDGILERGAKKTAEMNE-------KLSKMGESSLRNFTMDTE------SSVYNFEGED 718
EDID IL+R +E K S + + + ++D + + + E
Sbjct: 977 EDIDQILQRRTHTITIQSEGKGSTFAKASFVASGNRTDISLDDPNFWQKWAKIAELDTEA 1036
Query: 719 YREKQKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQD 773
EK+ + I+ P+ ++ + E + SE + RP + + D
Sbjct: 1037 KNEKESLV----IDRPRVRKQTKHYNSFEEDELMEFSELDSDSDERPTRSRRLND 1087
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 402 bits (1033), Expect = e-112
Identities = 248/634 (39%), Positives = 360/634 (56%), Gaps = 49/634 (7%)
Query: 162 TNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGY 221
+N+ + + S Y +LR+YQ+ GLNWL+ + N N ILADEMGLGKT+Q+I+ L Y
Sbjct: 842 SNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFL-Y 900
Query: 222 MKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVP--------TLRSVCLIGDKEQRAAFVRD 273
I GP +++ P ST+ NW EF+ W +L S +I E +
Sbjct: 901 EILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHGSLISRQMIQQYEMYFRDSQG 960
Query: 274 VLLPGEW--DVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTN 331
++ G + +T++EM++ WR ++IDEAHR+KN+ KL E ++ +
Sbjct: 961 RIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEH 1020
Query: 332 RLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPF 391
++LLTGTPLQN + EL+SLL+FL P F S F F L ++ V++L +L+P
Sbjct: 1021 KVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGD---LKTEEQVQKLQAILKPM 1077
Query: 392 LLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNS-AGKMDKMRLLNIL 450
+LRR+K DVEK L PK+E I V L+ +Q+++Y IL K+ L+ AG+ + L+N +
Sbjct: 1078 MLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTM 1137
Query: 451 MQLRKCCNHPYLFDGAEPG---------PPYTTDMHL---VTNSGKMVVLDKLLPKLKEQ 498
M+LRKCCNHPYL GAE P +D HL + ++GK+V++DKLLPK+K
Sbjct: 1138 MELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAG 1197
Query: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLS 558
G +VLIFSQM R LDILEDY + + Y Y R+DG+ + RQ +I+ +++P+S +FVF+L
Sbjct: 1198 GHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLC 1257
Query: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
TRAGGLGINL AD I++DSDWNPQ DLQA R HRIGQ K V+V+R +T N+ E +
Sbjct: 1258 TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMF 1317
Query: 619 ERAEMKLRLDSIVIQQGRLVDQN---LNKIGKDEMLQMIRHGATHVFASKE---SEITDE 672
+RA +KL LD V+Q + N + ++ K E+ ++R GA +E S+ +E
Sbjct: 1318 DRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIMEEEDEGSKFCEE 1377
Query: 673 DIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIE 732
DID IL R K ES R T S V + D + +W
Sbjct: 1378 DIDQILLRRTKTITI---------ESEGRGSTFAKASFVASGNRTDISLDDPNFWQKW-- 1426
Query: 733 PPKRERKANYAVDAYF-REALRVSEPKAPKAPRP 765
+KA ++A R +L + P+ K RP
Sbjct: 1427 ----AKKAEIDIEAISGRNSLVIDTPRIRKQTRP 1456
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 401 bits (1030), Expect = e-111
Identities = 239/570 (41%), Positives = 343/570 (60%), Gaps = 44/570 (7%)
Query: 149 EEDEELLTESSKATNV-------CTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGING 201
EE E+L++ + V + E S Y KLR+YQ+ G+NWL+ + N N
Sbjct: 930 EEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNC 989
Query: 202 ILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLI 261
ILADEMGLGKT+Q+I+ L Y + + I GP +V+ P ST+ NW EF+ W L V
Sbjct: 990 ILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWTE-LNVVVYH 1047
Query: 262 GDKEQRAA------FVRDV---LLPGEWD--VCVTSYEMLIKEKSVFKKFNWRYLVIDEA 310
G + R + +D ++ G + +T++EM++ + + WR +VIDEA
Sbjct: 1048 GSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEA 1107
Query: 311 HRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD 370
HR+KN KL E ++ +++LLTGTPLQN + EL+SLL+FL P F S F F
Sbjct: 1108 HRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFG 1167
Query: 371 TNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK 430
L ++ V++L +L+P +LRR+K DVEK+L PK+E I V L+ +Q+++Y IL K
Sbjct: 1168 D---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1224
Query: 431 DIDILNSAGKMDKM-RLLNILMQLRKCCNHPYLFDGAEP-------------GPPYTTDM 476
+ L+ G + LLN +M+LRKCCNHPYL +GAE P +
Sbjct: 1225 NFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQA 1284
Query: 477 HLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHD 536
++ +GK+V++DKLLPKLK G RVLIFSQM R LDILEDY + R Y Y R+DG+ +
Sbjct: 1285 -MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGN 1343
Query: 537 ERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRI 596
RQ +I+ +++P+S +FVF+L TRAGGLGINL AD I++DSDWNPQ DLQA R HRI
Sbjct: 1344 LRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRI 1403
Query: 597 GQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQ--QGRLVDQN-LNKIGKDEMLQM 653
GQ+K+V+++R IT N+ E + ++A +KL LD V+Q GR N + ++ K E+ +
Sbjct: 1404 GQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDL 1463
Query: 654 IRHGATHVFASKE---SEITDEDIDGILER 680
+R GA +E S+ +EDID IL R
Sbjct: 1464 LRKGAYGALMDEEDEGSKFCEEDIDQILLR 1493
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 319 bits (817), Expect = 1e-86
Identities = 192/506 (37%), Positives = 283/506 (55%), Gaps = 59/506 (11%)
Query: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 239
L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q I+ L Y+ N GPH+++VP S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
Query: 240 TLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-WDVCVTSYEMLIK---EKS 295
T+ NW+ E W PTL+ +C G +E+R ++ E ++V VT+Y I ++S
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
Query: 296 VFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLL 355
+F++ Y + DE H +KN S + + NRLLLTGTP+QNNL EL SLLNF++
Sbjct: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
Query: 356 PDVFNSA-DDFDSWFDTNNCLGDQKLV---ERL---HMVLRPFLLRRIKADVEKSLPPKK 408
P +F+S+ + F + D++ + ER+ +++PF+LRR+K +V K LPPKK
Sbjct: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
Query: 409 EVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLF----- 463
+ +S+ Q + Y + + +N+ + N++MQLRK NHP L
Sbjct: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795
Query: 464 ---------------DGAEPGPP--------------------------YTTDMHLVTNS 482
E P + DM L+ +S
Sbjct: 796 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855
Query: 483 GKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSI 542
GK VL +L +LK++G RV++FSQ T +LDILE + Y RLDG+T ER I
Sbjct: 856 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 915
Query: 543 NAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTV 602
+ +N + FVF+LST+AGGLGINL +A+VVIL+D D NP D QA DR HR+GQTK V
Sbjct: 916 DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 974
Query: 603 RVFRFITDNTVEERIVERAEMKLRLD 628
V + I+ T+EE +++ + KL+L+
Sbjct: 975 LVIKLISQGTIEESMLKINQQKLKLE 1000
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 319 bits (817), Expect = 1e-86
Identities = 192/506 (37%), Positives = 283/506 (55%), Gaps = 59/506 (11%)
Query: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 239
L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q I+ L Y+ N GPH+++VP S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
Query: 240 TLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-WDVCVTSYEMLIK---EKS 295
T+ NW+ E W PTL+ +C G +E+R ++ E ++V VT+Y I ++S
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
Query: 296 VFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLL 355
+F++ Y + DE H +KN S + + NRLLLTGTP+QNNL EL SLLNF++
Sbjct: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
Query: 356 PDVFNSA-DDFDSWFDTNNCLGDQKLV---ERL---HMVLRPFLLRRIKADVEKSLPPKK 408
P +F+S+ + F + D++ + ER+ +++PF+LRR+K +V K LPPKK
Sbjct: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
Query: 409 EVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLF----- 463
+ +S+ Q + Y + + +N+ + N++MQLRK NHP L
Sbjct: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795
Query: 464 ---------------DGAEPGPP--------------------------YTTDMHLVTNS 482
E P + DM L+ +S
Sbjct: 796 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855
Query: 483 GKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSI 542
GK VL +L +LK++G RV++FSQ T +LDILE + Y RLDG+T ER I
Sbjct: 856 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 915
Query: 543 NAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTV 602
+ +N + FVF+LST+AGGLGINL +A+VVIL+D D NP D QA DR HR+GQTK V
Sbjct: 916 DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 974
Query: 603 RVFRFITDNTVEERIVERAEMKLRLD 628
V + I+ T+EE +++ + KL+L+
Sbjct: 975 LVIKLISQGTIEESMLKINQQKLKLE 1000
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 318 bits (816), Expect = 1e-86
Identities = 194/506 (38%), Positives = 285/506 (56%), Gaps = 61/506 (12%)
Query: 180 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 239
L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q I+ L Y+ N GPH+++VP S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
Query: 240 TLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGE-WDVCVTSYEMLIK---EKS 295
T+ NW+ E W PTL+ +C G +E+R ++ E ++V VT+Y I ++S
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
Query: 296 VFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLL 355
+F++ Y + DE H +KN S + + NRLLLTGTP+QNNL EL SLLNF++
Sbjct: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
Query: 356 PDVFNSA-DDFDSWFDTNNCLGDQKLV---ERL---HMVLRPFLLRRIKADVEKSLPPKK 408
P +F+S+ + F + D++ + ER+ +++PF+LRR+K +V K LPPKK
Sbjct: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
Query: 409 EVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLF----- 463
+ +S+ Q + Y + + +N+ K +M N++MQLRK NHP L
Sbjct: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEM--CNVMMQLRKMANHPLLHRQYYT 793
Query: 464 ---------------DGAEPGPP--------------------------YTTDMHLVTNS 482
E P + DM L+ +S
Sbjct: 794 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 853
Query: 483 GKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSI 542
GK VL +L +LK++G RV++FSQ T +LDILE + Y RLDG+T ER I
Sbjct: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLI 913
Query: 543 NAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTV 602
+ +N + FVF+LST+AGGLGINL +A+VVIL+D D NP D QA DR HR+GQTK V
Sbjct: 914 DEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 603 RVFRFITDNTVEERIVERAEMKLRLD 628
V + I+ T+EE +++ + KL+L+
Sbjct: 973 LVIKLISQGTIEESMLKINQQKLKLE 998
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 289 bits (739), Expect = 1e-77
Identities = 205/622 (32%), Positives = 315/622 (50%), Gaps = 57/622 (9%)
Query: 57 EMEEIFDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTS 116
E EE DD G + ++ YE K R + + Q E+ F + ++ +
Sbjct: 379 EEEEEEDDEVEGAEADLSGDGTDYELKPLPKGGKRQKKVPVQ-EIDDDFFPSSGEEAEAA 437
Query: 117 PLK------MKPGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFED 170
+ K GR R DE + + R + +E L + S+ ++ F++
Sbjct: 438 SVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLRLQDKEKRLKLEDDSEESDA--EFDE 495
Query: 171 S---PSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKH--- 224
P ++ + KL YQ G+ WL L+ GIL DEMGLGKT+Q I+ L + +
Sbjct: 496 GFKVPGFL-FKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKI 554
Query: 225 ------YR-NIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGD---KEQRAAFVRDV 274
YR GP +++ P + +H W+ EF W P R L ++ +RDV
Sbjct: 555 RTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDV 614
Query: 275 LLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLL 334
+ +TSY + + +++W Y+++DE H+I+N + ++ ++F+T +R++
Sbjct: 615 AHCH--GILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRII 672
Query: 335 LTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ--------KLVERLHM 386
L+G+P+QNNL ELWSL +F+ P + F F +G K +
Sbjct: 673 LSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCAC 732
Query: 387 VLR----PFLLRRIKADVEKSL--PPKKEVKIYVGLSKMQREWYTRIL-MKDI-DILNSA 438
VLR P+LLRR+K+DV+ SL P K E ++ L+ Q + Y + K++ ILN
Sbjct: 733 VLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNG- 791
Query: 439 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTN-------SGKMVVLDKL 491
+M++ + L+ LRK CNHP LF G D L + SGKM+V++ L
Sbjct: 792 ----EMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESL 847
Query: 492 LPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNST 551
L +QG RVL+FSQ ++LDILE + + Y Y ++DG T RQ I YNE S
Sbjct: 848 LKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSI 907
Query: 552 KFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDN 611
FVF+L+TR GGLG+NL A+ V++YD DWNP D QA +RA RIGQ K V V+R +T
Sbjct: 908 -FVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAG 966
Query: 612 TVEERIVERAEMKLRLDSIVIQ 633
T+EE+I R K L + V++
Sbjct: 967 TIEEKIYHRQIFKQFLTNRVLK 988
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 272 bits (696), Expect = 1e-72
Identities = 174/480 (36%), Positives = 248/480 (51%), Gaps = 42/480 (8%)
Query: 2 SSAAEPPPPPPPESAPSKPAASIASGGSNSSNKGGPEGVAAQAVASAVSAGPADAEMEEI 61
SS EP P E P + ++S + + S E + + + ++ +++E E
Sbjct: 474 SSDCEPEGPVEAEEPPQEDSSSQSDSVEDRSEDEEDEHSEEEETSGSSASEESESEESE- 532
Query: 62 FDDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMK 121
DA Q + +E D + EYLL + E + + TP P +
Sbjct: 533 --DAQSQSQADEEEEDDDFG----------VEYLLARDEEQSEADAGSGPPTP-GPTTLG 579
Query: 122 PGRPRIKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLR 181
P + L Y T+ + LL G+LR
Sbjct: 580 PKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLR--------------------GQLR 619
Query: 182 DYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTL 241
+YQ GL+WL+++YE +NGILADEMGLGKT+QTISLL ++ + GPH+++VP S +
Sbjct: 620 EYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVM 679
Query: 242 HNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFN 301
NW E KRW P+ + + G +++R + P + VC+TSY++++++ F++ N
Sbjct: 680 LNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKN 739
Query: 302 WRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNS 361
WRYL++DEA IKN KS+ + + F + RLLLTGTPLQN+L ELWSL++FL+P VF S
Sbjct: 740 WRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQS 799
Query: 362 ADDFDSWFD---TNNCLGDQK----LVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYV 414
+F WF T G Q+ LV+RLH VLRPFLLRR+K DVEK +P K E I
Sbjct: 800 HREFKEWFSNPLTGMIEGSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRC 859
Query: 415 GLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTT 474
LSK QR Y M + M ++NILMQLRK CNHP LFD P+ T
Sbjct: 860 RLSKRQRCLYDD-FMAQTTTKETLATGHFMSVINILMQLRKVCNHPNLFDPRPVTSPFIT 918
Score = 153 bits (387), Expect = 7e-37
Identities = 77/162 (47%), Positives = 109/162 (67%), Gaps = 2/162 (1%)
Query: 475 DMHLVT-NSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQT 533
D+ L+ + GK+ L LL +LK +G RVLIF+QMTR+LD+LE + + + Y RLDG T
Sbjct: 2034 DLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGST 2093
Query: 534 PHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRA 593
++RQ + +N F F+LSTR+GG+G+NL AD V+ YDSDWNP +D QA DR
Sbjct: 2094 RVEQRQALMERFNADKRI-FCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRC 2152
Query: 594 HRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQG 635
HRIGQT+ V ++R I++ TVEE I+++A K L + I+ G
Sbjct: 2153 HRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGG 2194
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 256 bits (653), Expect = 1e-67
Identities = 170/494 (34%), Positives = 254/494 (51%), Gaps = 85/494 (17%)
Query: 32 SNKGGPEGVAAQAVASAVSAGPADAEMEEIFDDASPGKQKEIQEPDPTYEEKMQTD-RAN 90
+ GG E A PA E EE + A +++++ E ++ T+ R
Sbjct: 7 AGSGGSEAPAMVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYR 66
Query: 91 RFEYLLKQTELFAHFI-------QPAAQKTPTS------PLKMKPGRPRIKKDEKQNLLS 137
R ++LL+++ +++ F+ Q QK LK+K G+ I E++ ++
Sbjct: 67 RLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASEEKPVMR 126
Query: 138 VG----DYRHRRTEQEEDEELLT-----------ESSKATNVCT----RFEDSPSYVK-- 176
D + +E EE+L+ E+S +TN+C + +DS S +K
Sbjct: 127 KKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDR 186
Query: 177 ---------------------------------WGKLRDYQVRGLNWLISLYENGINGIL 203
G +R YQV G+ WL L+ENGINGIL
Sbjct: 187 LSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGIL 246
Query: 204 ADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGD 263
ADEMGLGKT+Q I+ + M R +PGP +V P STL NWM+EFKR+ P + ++ G
Sbjct: 247 ADEMGLGKTVQCIATIALMIQ-RGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGT 305
Query: 264 KEQRAAFVRDVLLPGEW----DVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSK 319
+E+R VR++ V +TS+E+ +++++ + W+YL++DE HRIKN K +
Sbjct: 306 QEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCR 365
Query: 320 LSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--- 376
L ++ F N+LLLTGTPLQNNL ELWSLLNFLLPDVF+ F+SWFD +
Sbjct: 366 LIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAE 425
Query: 377 -------DQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILM 429
+Q ++ LH +L PFLLRR+K+DV +PPK+EV +Y LSK Q +YT I+
Sbjct: 426 DIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVN 485
Query: 430 KDIDILNSAGKMDK 443
+ I N G +K
Sbjct: 486 R--TIANMFGSSEK 497
Score = 227 bits (578), Expect = 5e-59
Identities = 116/249 (46%), Positives = 172/249 (69%), Gaps = 15/249 (6%)
Query: 444 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTT----DMHLVTNSGKMVVLDKLLPKLKEQG 499
++L NI+M LRKCCNHPYL + P P T D LVTNSGK ++LD++LP+LK++G
Sbjct: 558 LKLQNIMMLLRKCCNHPYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRG 615
Query: 500 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLST 559
+VL+FSQMT +LDIL DYC R++ + RLDG + ER+ +++++N F+F++ST
Sbjct: 616 HKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEV-FIFLVST 674
Query: 560 RAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVE 619
RAGGLGINL AD VI+YDSDWNPQ DLQA DR HRIGQTK V V+R +T NT++++IVE
Sbjct: 675 RAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734
Query: 620 RAEMKLRLDSIVIQQGRL------VDQNLNKIGKDEMLQMI--RHGATHVFASKESEITD 671
RA K +L+ ++I + ++ + N + E+++++ R + S+E I+D
Sbjct: 735 RAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISD 794
Query: 672 EDIDGILER 680
+D++ +L+R
Sbjct: 795 KDLELLLDR 803
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,367,935
Number of Sequences: 37866
Number of extensions: 2110507
Number of successful extensions: 23020
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 19775
Number of HSP's gapped (non-prelim): 2720
length of query: 1052
length of database: 18,247,518
effective HSP length: 113
effective length of query: 939
effective length of database: 13,968,660
effective search space: 13116571740
effective search space used: 13116571740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.