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Search of human proteins with 21071056
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
(1647 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 3327 0.0
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 3327 0.0
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 3311 0.0
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 3241 0.0
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 3235 0.0
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 3234 0.0
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 3229 0.0
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 2402 0.0
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 2396 0.0
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 470 e-132
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 461 e-129
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 449 e-125
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 412 e-114
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 396 e-109
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 394 e-109
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 393 e-109
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 393 e-109
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 392 e-108
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 390 e-108
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 382 e-105
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 367 e-101
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 362 2e-99
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 358 2e-98
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 354 4e-97
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 353 8e-97
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 306 1e-82
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 305 3e-82
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 305 3e-82
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 274 6e-73
gi|38708321 INO80 complex homolog 1 [Homo sapiens] 259 1e-68
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 3327 bits (8627), Expect = 0.0
Identities = 1647/1647 (100%), Positives = 1647/1647 (100%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
Sbjct: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
Query: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
Sbjct: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
Query: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
Sbjct: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
Query: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
Sbjct: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
Query: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
Sbjct: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Query: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
Sbjct: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
Query: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
Sbjct: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
Query: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
Sbjct: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
Query: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
Sbjct: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
Query: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
Query: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
Sbjct: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
Query: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
Sbjct: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
Query: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
Query: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
Query: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
Sbjct: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
Query: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
Sbjct: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
Query: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
Sbjct: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
Query: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
Sbjct: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
Query: 1381 DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1440
DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ
Sbjct: 1381 DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1440
Query: 1441 KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL 1500
KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL
Sbjct: 1441 KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL 1500
Query: 1501 IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 1560
IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV
Sbjct: 1501 IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 1560
Query: 1561 RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS 1620
RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS
Sbjct: 1561 RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS 1620
Query: 1621 RAKPVVSDDDSEEEQEEDRSGSGSEED 1647
RAKPVVSDDDSEEEQEEDRSGSGSEED
Sbjct: 1621 RAKPVVSDDDSEEEQEEDRSGSGSEED 1647
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 3327 bits (8627), Expect = 0.0
Identities = 1647/1647 (100%), Positives = 1647/1647 (100%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
Sbjct: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
Query: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
Sbjct: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
Query: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
Sbjct: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
Query: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
Sbjct: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
Query: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
Sbjct: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Query: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
Sbjct: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
Query: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
Sbjct: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
Query: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
Sbjct: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
Query: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
Sbjct: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
Query: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
Query: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
Sbjct: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
Query: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
Sbjct: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
Query: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
Query: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
Query: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
Sbjct: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
Query: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
Sbjct: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
Query: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
Sbjct: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
Query: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
Sbjct: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
Query: 1381 DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1440
DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ
Sbjct: 1381 DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1440
Query: 1441 KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL 1500
KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL
Sbjct: 1441 KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL 1500
Query: 1501 IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 1560
IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV
Sbjct: 1501 IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 1560
Query: 1561 RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS 1620
RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS
Sbjct: 1561 RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS 1620
Query: 1621 RAKPVVSDDDSEEEQEEDRSGSGSEED 1647
RAKPVVSDDDSEEEQEEDRSGSGSEED
Sbjct: 1621 RAKPVVSDDDSEEEQEEDRSGSGSEED 1647
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 3311 bits (8584), Expect = 0.0
Identities = 1647/1679 (98%), Positives = 1647/1679 (98%), Gaps = 32/1679 (1%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
Sbjct: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
Query: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
Sbjct: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
Query: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
Sbjct: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
Query: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
Sbjct: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
Query: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
Sbjct: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Query: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
Sbjct: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
Query: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
Sbjct: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
Query: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
Sbjct: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
Query: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
Sbjct: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
Query: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
Query: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
Sbjct: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
Query: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
Sbjct: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
Query: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
Query: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
Query: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
Sbjct: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
Query: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR
Sbjct: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
Query: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD
Sbjct: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
Query: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
Sbjct: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
Query: 1381 DSLTEKQWL--------------------------------KAIEEGTLEEIEEEVRQKK 1408
DSLTEKQWL KAIEEGTLEEIEEEVRQKK
Sbjct: 1381 DSLTEKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIEEEVRQKK 1440
Query: 1409 SSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDA 1468
SSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDA
Sbjct: 1441 SSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDA 1500
Query: 1469 VIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKD 1528
VIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKD
Sbjct: 1501 VIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKD 1560
Query: 1529 VMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSES 1588
VMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSES
Sbjct: 1561 VMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSES 1620
Query: 1589 ESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1647
ESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED
Sbjct: 1621 ESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1679
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 3241 bits (8402), Expect = 0.0
Identities = 1614/1647 (97%), Positives = 1614/1647 (97%), Gaps = 33/1647 (2%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
Sbjct: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
Query: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
Sbjct: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
Query: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
Sbjct: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
Query: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
Sbjct: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
Query: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
Sbjct: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Query: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
Sbjct: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
Query: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
Sbjct: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
Query: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
Sbjct: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
Query: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
Sbjct: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
Query: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
Query: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
Sbjct: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
Query: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
Sbjct: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
Query: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
Query: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
Query: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
Sbjct: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
Query: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE
Sbjct: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE-- 1258
Query: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
EEDEVPDDETVNQMIARHEEEFDLFMRMD
Sbjct: 1259 -------------------------------EEDEVPDDETVNQMIARHEEEFDLFMRMD 1287
Query: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
Sbjct: 1288 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1347
Query: 1381 DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1440
DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ
Sbjct: 1348 DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1407
Query: 1441 KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL 1500
KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL
Sbjct: 1408 KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL 1467
Query: 1501 IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 1560
IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV
Sbjct: 1468 IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 1527
Query: 1561 RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS 1620
RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS
Sbjct: 1528 RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS 1587
Query: 1621 RAKPVVSDDDSEEEQEEDRSGSGSEED 1647
RAKPVVSDDDSEEEQEEDRSGSGSEED
Sbjct: 1588 RAKPVVSDDDSEEEQEEDRSGSGSEED 1614
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 3235 bits (8388), Expect = 0.0
Identities = 1614/1650 (97%), Positives = 1614/1650 (97%), Gaps = 36/1650 (2%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
Sbjct: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
Query: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
Sbjct: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
Query: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
Sbjct: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
Query: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
Sbjct: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
Query: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
Sbjct: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Query: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
Sbjct: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
Query: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
Sbjct: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
Query: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
Sbjct: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
Query: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
Sbjct: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
Query: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
Query: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
Sbjct: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
Query: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
Sbjct: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
Query: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
Query: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
Query: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
Sbjct: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
Query: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE
Sbjct: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE-- 1258
Query: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
EEDEVPDDETVNQMIARHEEEFDLFMRMD
Sbjct: 1259 -------------------------------EEDEVPDDETVNQMIARHEEEFDLFMRMD 1287
Query: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
Sbjct: 1288 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1347
Query: 1381 DSLTEKQW---LKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDES 1437
DSLTEKQW LKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDES
Sbjct: 1348 DSLTEKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDES 1407
Query: 1438 KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEY 1497
KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEY
Sbjct: 1408 KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEY 1467
Query: 1498 YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF 1557
YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF
Sbjct: 1468 YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF 1527
Query: 1558 TSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPS 1617
TSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPS
Sbjct: 1528 TSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPS 1587
Query: 1618 RGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1647
RGSRAKPVVSDDDSEEEQEEDRSGSGSEED
Sbjct: 1588 RGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1617
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 3234 bits (8386), Expect = 0.0
Identities = 1613/1647 (97%), Positives = 1613/1647 (97%), Gaps = 34/1647 (2%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
Sbjct: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
Query: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
Sbjct: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
Query: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
Sbjct: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
Query: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
Sbjct: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
Query: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
Sbjct: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Query: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
Sbjct: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
Query: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
Sbjct: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
Query: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
Sbjct: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
Query: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
Sbjct: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
Query: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
Query: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
Sbjct: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
Query: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
Sbjct: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
Query: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
Query: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
Query: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
Sbjct: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
Query: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE
Sbjct: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE-- 1258
Query: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
EEDEVPDDETVNQMIARHEEEFDLFMRMD
Sbjct: 1259 -------------------------------EEDEVPDDETVNQMIARHEEEFDLFMRMD 1287
Query: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
Sbjct: 1288 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1347
Query: 1381 DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1440
DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ
Sbjct: 1348 DSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQ 1407
Query: 1441 KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL 1500
KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKD SSGRQLSEVFIQLPSRKELPEYYEL
Sbjct: 1408 KKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKD-SSGRQLSEVFIQLPSRKELPEYYEL 1466
Query: 1501 IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 1560
IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV
Sbjct: 1467 IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSV 1526
Query: 1561 RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS 1620
RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS
Sbjct: 1527 RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS 1586
Query: 1621 RAKPVVSDDDSEEEQEEDRSGSGSEED 1647
RAKPVVSDDDSEEEQEEDRSGSGSEED
Sbjct: 1587 RAKPVVSDDDSEEEQEEDRSGSGSEED 1613
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 3229 bits (8372), Expect = 0.0
Identities = 1613/1650 (97%), Positives = 1613/1650 (97%), Gaps = 37/1650 (2%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG
Sbjct: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQG 60
Query: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY
Sbjct: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
Query: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL
Sbjct: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQL 180
Query: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
Sbjct: 181 RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP 240
Query: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
Sbjct: 241 GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ 300
Query: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG
Sbjct: 301 KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRG 360
Query: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
Sbjct: 361 LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV 420
Query: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
Sbjct: 421 VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL 480
Query: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
Sbjct: 481 QHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK 540
Query: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
Sbjct: 541 LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG 600
Query: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
Sbjct: 601 PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES 660
Query: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
Sbjct: 661 GSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV 720
Query: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
Sbjct: 721 SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE 780
Query: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
Sbjct: 781 MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA 840
Query: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
Sbjct: 841 RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
Query: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
Sbjct: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
Query: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
Sbjct: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
Query: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
Sbjct: 1021 GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG 1080
Query: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
Sbjct: 1081 KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK 1140
Query: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
Sbjct: 1141 TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR 1200
Query: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESR 1260
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE
Sbjct: 1201 VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE-- 1258
Query: 1261 HCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMD 1320
EEDEVPDDETVNQMIARHEEEFDLFMRMD
Sbjct: 1259 -------------------------------EEDEVPDDETVNQMIARHEEEFDLFMRMD 1287
Query: 1321 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1380
LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS
Sbjct: 1288 LDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYS 1347
Query: 1381 DSLTEKQW---LKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDES 1437
DSLTEKQW LKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDES
Sbjct: 1348 DSLTEKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDES 1407
Query: 1438 KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEY 1497
KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKD SSGRQLSEVFIQLPSRKELPEY
Sbjct: 1408 KKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKD-SSGRQLSEVFIQLPSRKELPEY 1466
Query: 1498 YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF 1557
YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF
Sbjct: 1467 YELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF 1526
Query: 1558 TSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPS 1617
TSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPS
Sbjct: 1527 TSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPS 1586
Query: 1618 RGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1647
RGSRAKPVVSDDDSEEEQEEDRSGSGSEED
Sbjct: 1587 RGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1616
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 2402 bits (6224), Expect = 0.0
Identities = 1246/1666 (74%), Positives = 1368/1666 (82%), Gaps = 115/1666 (6%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58
MSTP P G P PGPSPGPGPSPG +LGPSPGP SPGS HSMMGPSPGPPS HP+PT
Sbjct: 1 MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
Query: 59 QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118
G +PQ+ MHQMHKP++ +H+KG+ +D MKG GMR H GMGPP SPMDQHSQ
Sbjct: 60 MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
Query: 119 GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
GY PSPLG EH SSP+ GP+ PQM GA + G DPQA+ Q NRGP+PF+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
Query: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233
QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ
Sbjct: 177 VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
Query: 234 -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286
P P PA NY+RP G PG GP
Sbjct: 237 QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
Query: 287 GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344
STPQKL P P GRPSPAPPA PPAA+ V P P P QP+P++
Sbjct: 273 ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
Query: 345 LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404
L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL DLRTKAT+EL
Sbjct: 321 LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
Query: 405 KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464
KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 381 KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
Query: 465 ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524
ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 441 ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
Query: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584
ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
Query: 585 KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642
++KK ENAEG A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 561 RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
Query: 643 LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702
LEMNPGYEVAPRSDSEES S+ EEE+EEEE + E+K + DP+S++VSE D
Sbjct: 621 LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
Query: 703 ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762
A+ IIE AKQDVDDEY + Q ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 674 AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
Query: 763 EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822
EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 733 EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
Query: 823 DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 793 DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
Query: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 853 GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
Query: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 913 FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
Query: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062
LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 973 LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
Query: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F
Sbjct: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
Query: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
YLRLDGTTK+EDR LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
Query: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
Query: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETV 1302
RRAFLQAILEHEE++E EEDEVPDDET+
Sbjct: 1213 RRAFLQAILEHEEENE---------------------------------EEDEVPDDETL 1239
Query: 1303 NQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1362
NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE
Sbjct: 1240 NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1299
Query: 1363 EEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSS 1422
EEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G LEE+EEEVR KK R+R D D
Sbjct: 1300 EEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA-- 1357
Query: 1423 TPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLS 1482
K+D K +K+RGRPPAEKLSPNPP LTK+M I+D VI YKDSS GRQLS
Sbjct: 1358 ----------KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDSS-GRQLS 1406
Query: 1483 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE 1542
EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSL DLEKDVMLLC NAQTFNLE
Sbjct: 1407 EVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLE 1466
Query: 1543 GSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRK 1602
GS IYEDSIVLQSVF S RQKI KE++SE E +EEEEE +EE SESE++SVKVKIKL +K
Sbjct: 1467 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKK 1526
Query: 1603 -EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1647
+K +D+ K G++RP+RG +AKPVVSD DS+EEQ+E GS D
Sbjct: 1527 DDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEEQDEREQSEGSGTD 1570
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 2396 bits (6209), Expect = 0.0
Identities = 1246/1683 (74%), Positives = 1369/1683 (81%), Gaps = 131/1683 (7%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGP--SPGSAHSMMGPSPGPPSAGHPIPT 58
MSTP P G P PGPSPGPGPSPG +LGPSPGP SPGS HSMMGPSPGPPS HP+PT
Sbjct: 1 MSTPTDP-GAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPT 59
Query: 59 QGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQ 118
G +PQ+ MHQMHKP++ +H+KG+ +D MKG GMR H GMGPP SPMDQHSQ
Sbjct: 60 MGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPP-HPGMGPPQSPMDQHSQ 118
Query: 119 GY----PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQ 174
GY PSPLG EH SSP+ GP+ PQM GA + G DPQA+ Q NRGP+PF+
Sbjct: 119 GYMSPHPSPLGAPEHVSSPMSGGGPTP-PQMPPSQPGALIPG-DPQAMSQPNRGPSPFSP 176
Query: 175 NQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPG- 233
QLHQLRAQI+AYKMLARGQPLP+ LQ+AVQGKR +PG+QQQ
Sbjct: 177 VQLHQLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQ 236
Query: 234 -------PGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPE 286
P P PA NY+RP G PG GP
Sbjct: 237 QQPQQQPPQPQTQQQQQPALVNYNRPSG------------------PGPELSGP------ 272
Query: 287 GPMANAAAPTSTPQKLIPPQPTGRPSPAPPAV--PPAASPVMPPQTQSPGQPAQPAPMVP 344
STPQKL P P GRPSPAPPA PPAA+ V P P P QP+P++
Sbjct: 273 ----------STPQKLPVPAPGGRPSPAPPAAAQPPAAA-VPGPSVPQPA-PGQPSPVLQ 320
Query: 345 LHQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIEL 404
L QKQSRI+PIQKP+GLDPVEILQEREYRLQARIAHRIQELENLPGSL DLRTKAT+EL
Sbjct: 321 LQQKQSRISPIQKPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVEL 380
Query: 405 KALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQ 464
KALRLLNFQRQLRQEVV CMRRDT LETALN+KAYKRSKRQ+LREAR+TEKLEKQQKIEQ
Sbjct: 381 KALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQ 440
Query: 465 ERKRRQKHQEYLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEK 524
ERKRRQKHQEYLNSILQHAKDFKEYHRSV GKIQKL+KAVAT+HANTEREQKKE ERIEK
Sbjct: 441 ERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEK 500
Query: 525 ERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKK 584
ERMRRLMAEDEEGYRKLIDQKKD+RLAYLLQQTDEYVANLT LV +HK AQ AKEKKK++
Sbjct: 501 ERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRR 560
Query: 585 KKKKA--ENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAW 642
++KK ENAEG A+GPDGEP+DE+SQMSDLPVKV H E+GK+L G +APKA QL+AW
Sbjct: 561 RRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAW 620
Query: 643 LEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVD 702
LEMNPGYEVAPRSDSEES S+ EEE+EEEE + E+K + DP+S++VSE D
Sbjct: 621 LEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQET-------EEKILLDPNSEEVSEKD 673
Query: 703 ARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGL 762
A+ IIE AKQDVDDEY + Q ARG QSYY VAHA++ERV+KQSAL++NG LK YQ++GL
Sbjct: 674 AKQIIETAKQDVDDEYSM-QYSARGSQSYYTVAHAISERVEKQSALLINGTLKHYQLQGL 732
Query: 763 EWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEF 822
EW+VSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR+NGP+LIIVPLSTLSNW YEF
Sbjct: 733 EWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEF 792
Query: 823 DKWAPSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
DKWAPSVVK+SYKG+PA RR+ VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE
Sbjct: 793 DKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 852
Query: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
GHRMKNHHCKLTQVLNTHYVAPRR+LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW
Sbjct: 853 GHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 912
Query: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
FNAPFAMTGE+VDLNEEETILIIRRLHKVLRPFLLRRLKKEVE+QLPEKVEYVIKCDMSA
Sbjct: 913 FNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
Query: 1003 LQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEH 1062
LQ++LYRHMQAKG+LLTDGSEKDKKGKGG KTLMNTIMQLRKICNHPYMFQHIEESF+EH
Sbjct: 973 LQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEH 1032
Query: 1063 LGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFK 1122
LG++ G++ G +LYRASGKFELLDRILPKLRATNH+VLLFCQMTSLMTIMEDYFA+R F
Sbjct: 1033 LGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
Query: 1123 YLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQ 1182
YLRLDGTTK+EDR LLK FNEPGS+YFIFLLSTRAGGLGLNLQ+ADTV+IFDSDWNPHQ
Sbjct: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
Query: 1183 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1242
DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE
Sbjct: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
Query: 1243 RRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETV 1302
RRAFLQAILEHEE++E EEDEVPDDET+
Sbjct: 1213 RRAFLQAILEHEEENE---------------------------------EEDEVPDDETL 1239
Query: 1303 NQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1362
NQMIAR EEEFDLFMRMD+DRRRE+ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE
Sbjct: 1240 NQMIARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEE 1299
Query: 1363 EEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSS 1422
EEK+FGRGSR R++VDYSD+LTEKQWL+AIE+G LEE+EEEVR KK R+R D D
Sbjct: 1300 EEKIFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPA-- 1357
Query: 1423 TPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKD-------- 1474
K+D K +K+RGRPPAEKLSPNPP LTK+M I+D VI YKD
Sbjct: 1358 ----------KEDVEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVP 1407
Query: 1475 ---------SSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDL 1525
+SSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSL DL
Sbjct: 1408 SNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDL 1467
Query: 1526 EKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEG 1585
EKDVMLLC NAQTFNLEGS IYEDSIVLQSVF S RQKI KE++SE E +EEEEE +EE
Sbjct: 1468 EKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEE 1527
Query: 1586 SESESRSVKVKIKLGRK-EKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGS 1644
SESE++SVKVKIKL +K +K +D+ K G++RP+RG +AKPVVSD DS+EEQ+E GS
Sbjct: 1528 SESEAKSVKVKIKLNKKDDKGRDKGK-GKKRPNRG-KAKPVVSDFDSDEEQDEREQSEGS 1585
Query: 1645 EED 1647
D
Sbjct: 1586 GTD 1588
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 470 bits (1209), Expect = e-132
Identities = 271/643 (42%), Positives = 377/643 (58%), Gaps = 58/643 (9%)
Query: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS---EEEEEEEEEEQPQAA 677
+V S ++ APK+ + EM+P YE ++D + ++ E QP A
Sbjct: 60 NVSSFQLKLAAKAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQ 114
Query: 678 QPPTLPVEEKKKIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
+ PT P+ K P D+ +S D RH +Q+ D+E L S
Sbjct: 115 KSPTSPLNMKLGRPRIKKDEKQSLISAGDYRH--RRTEQEEDEE----------LLSESR 162
Query: 734 VAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI 793
V R + + + G L+ YQI+GL WL+SLY N +NGILADEMGLGKT+QTIAL+
Sbjct: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL 222
Query: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGK 852
YL ++ I GP +++VP STL NW EF +W PS+ + + G AR AF+ ++ G+
Sbjct: 223 GYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
Query: 853 FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
++V +T+YE +IK+K + K W+Y+++DE HR+KN KL++++ + + RLLLTGT
Sbjct: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGT 341
Query: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL 972
PLQN L ELWALLNFLLP +F S F+ WF+ + +K ++ RLH VL
Sbjct: 342 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVL 391
Query: 973 RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT 1032
+PFLLRR+K +VE LP K E I +S +QR Y +L+ D + GK
Sbjct: 392 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDK 446
Query: 1033 KTLMNTIMQLRKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRI 1088
L+N +MQLRK CNHPY+F E + EH+ SGK +LD++
Sbjct: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI------------VSNSGKMVVLDKL 494
Query: 1089 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSE 1148
L KL+ +VL+F QMT L+ I+EDY +RG++Y RLDG T E+R ++ FN P S
Sbjct: 495 LAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSS 554
Query: 1149 YFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVN 1208
FIF+LSTRAGGLG+NL SAD VI++DSDWNP DLQA DRAHRIGQ+ VRV RL T N
Sbjct: 555 KFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDN 614
Query: 1209 SVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAI 1250
+VEE+I+ A+ KL +D VIQ G + DQ+S+ + LQ I
Sbjct: 615 TVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI 657
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 461 bits (1186), Expect = e-129
Identities = 271/655 (41%), Positives = 377/655 (57%), Gaps = 70/655 (10%)
Query: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS---EEEEEEEEEEQPQAA 677
+V S ++ APK+ + EM+P YE ++D + ++ E QP A
Sbjct: 60 NVSSFQLKLAAKAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQ 114
Query: 678 QPPTLPVEEKKKIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
+ PT P+ K P D+ +S D RH +Q+ D+E L S
Sbjct: 115 KSPTSPLNMKLGRPRIKKDEKQSLISAGDYRH--RRTEQEEDEE----------LLSESR 162
Query: 734 VAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI 793
V R + + + G L+ YQI+GL WL+SLY N +NGILADEMGLGKT+QTIAL+
Sbjct: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL 222
Query: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGK 852
YL ++ I GP +++VP STL NW EF +W PS+ + + G AR AF+ ++ G+
Sbjct: 223 GYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
Query: 853 FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
++V +T+YE +IK+K + K W+Y+++DE HR+KN KL++++ + + RLLLTGT
Sbjct: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGT 341
Query: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL 972
PLQN L ELWALLNFLLP +F S F+ WF+ + +K ++ RLH VL
Sbjct: 342 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVL 391
Query: 973 RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT 1032
+PFLLRR+K +VE LP K E I +S +QR Y +L+ D + GK
Sbjct: 392 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDK 446
Query: 1033 KTLMNTIMQLRKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRI 1088
L+N +MQLRK CNHPY+F E + EH+ SGK +LD++
Sbjct: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI------------VSNSGKMVVLDKL 494
Query: 1089 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG------------ 1136
L KL+ +VL+F QMT L+ I+EDY +RG++Y RLDG T E+R
Sbjct: 495 LAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQR 554
Query: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
++ FN P S FIF+LSTRAGGLG+NL SAD VI++DSDWNP DLQA DRAHRIGQ+
Sbjct: 555 EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQK 614
Query: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAI 1250
VRV RL T N+VEE+I+ A+ KL +D VIQ G + DQ+S+ + LQ I
Sbjct: 615 KPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI 669
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 449 bits (1155), Expect = e-125
Identities = 259/628 (41%), Positives = 363/628 (57%), Gaps = 45/628 (7%)
Query: 632 DAPKAGQLEAWLEMNPGYEVAPRSDSE---ESGSEEEEEEEEEEQPQAAQPPTLPVEEKK 688
D G+ + E +P YE ++D E ++ E QP A + PT P++ K
Sbjct: 63 DDASPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKP 122
Query: 689 KIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDK 744
P D+ +S D RH +Q+ D+E L + + A V R +
Sbjct: 123 GRPRIKKDEKQNLLSVGDYRH--RRTEQEEDEE----------LLTESSKATNVCTRFED 170
Query: 745 QSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRING 804
+ + G L+ YQ++GL WL+SLY N +NGILADEMGLGKT+QTI+L+ Y+ ++ I G
Sbjct: 171 SPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPG 230
Query: 805 PFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ-LRSGKFNVLLTTYEYI 863
P +++VP STL NW EF +W P++ V G R AFV L G+++V +T+YE +
Sbjct: 231 PHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEML 290
Query: 864 IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWA 923
IK+K + K W+Y+++DE HR+KN KL++++ + RLLLTGTPLQN L ELW+
Sbjct: 291 IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR-EFKTTNRLLLTGTPLQNNLHELWS 349
Query: 924 LLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKE 983
LLNFLLP +F S F+ WF+ + +K ++ RLH VLRPFLLRR+K +
Sbjct: 350 LLNFLLPDVFNSADDFDSWFDTNNCLGDQK----------LVERLHMVLRPFLLRRIKAD 399
Query: 984 VEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLR 1043
VE LP K E I +S +QR Y +L+ D + GK L+N +MQLR
Sbjct: 400 VEKSLPPKKEVKIYVGLSKMQREWYTR-----ILMKDIDILNSAGKMDKMRLLNILMQLR 454
Query: 1044 KICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFC 1103
K CNHPY+F E + L SGK +LD++LPKL+ +VL+F
Sbjct: 455 KCCNHPYLFDGAEPG--------PPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
Query: 1104 QMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGL 1163
QMT ++ I+EDY +R ++Y RLDG T ++R + +NEP S F+F+LSTRAGGLG+
Sbjct: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGI 566
Query: 1164 NLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN 1223
NL +AD VI++DSDWNP DLQA DRAHRIGQ VRV R T N+VEE+I+ A+ KL
Sbjct: 567 NLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLR 626
Query: 1224 VDQKVIQAG-MFDQKSSSHERRAFLQAI 1250
+D VIQ G + DQ + + LQ I
Sbjct: 627 LDSIVIQQGRLVDQNLNKIGKDEMLQMI 654
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 412 bits (1059), Expect = e-114
Identities = 294/835 (35%), Positives = 426/835 (51%), Gaps = 105/835 (12%)
Query: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
L+ YQ++GL WL + N + ILADEMGLGKTIQTI+ ++YL ++ GPFLI+VPLS
Sbjct: 484 LRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 543
Query: 814 TLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------QLRSGKFNVLLTTYEYIIKDK 867
TL++W EF+ WAP + V Y G +R Q + KFN L+TTYE ++KDK
Sbjct: 544 TLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDK 603
Query: 868 HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 927
+L I W ++ VDE HR+KN L + L + + RLL+TGTPLQN L ELW+LL+F
Sbjct: 604 TVLGSINWAFLGVDEAHRLKNDDSLLYKTL-IDFKSNHRLLITGTPLQNSLKELWSLLHF 662
Query: 928 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQ 987
++P F+ FE E E + LHKVL PFLLRR+KK+VE
Sbjct: 663 IMPEKFEFWEDFE-----------EDHGKGRENGY---QSLHKVLEPFLLRRVKKDVEKS 708
Query: 988 LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICN 1047
LP KVE +++ +MSALQ+ Y K +L + K +G T +N +M+L+K CN
Sbjct: 709 LPAKVEQILRVEMSALQKQYY-----KWILTRNYKALAKGTRGSTSGFLNIVMELKKCCN 763
Query: 1048 HPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTS 1107
H Y+ + EE+ E+ G L L R+SGK LLD++L +LR ++VL+F QM
Sbjct: 764 HCYLIKPPEENEREN-----GQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVR 818
Query: 1108 LMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS 1167
++ I+ +Y + + + RLDG+ K E R L FN GSE F FLLSTRAGGLG+NL S
Sbjct: 819 MLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGLGINLAS 878
Query: 1168 ADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQK 1227
ADTV+IFDSDWNP DLQAQ RAHRIGQ+ +V + RL T +VEE+I+ AK K+ +D
Sbjct: 879 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHL 938
Query: 1228 VIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEE 1287
VIQ D + ILE+ SG ++
Sbjct: 939 VIQ--RMDTTG---------RTILEN-----------NSGRSN---------------SN 961
Query: 1288 PPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI 1347
P KEE + E E MD+D A + + DEL S
Sbjct: 962 PFNKEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLS-- 1019
Query: 1348 IKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEE--EVR 1405
+V E+EE++ R D+ + + E+Q K EE +E+EE +
Sbjct: 1020 ---QFKVANFATMEDEEEL-----EERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLP 1071
Query: 1406 QKKSSRKRKRDSDAGSST--------PTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPN 1457
+ +SS K+ + +D+ S T + S + D+ KK K+RGRP + +
Sbjct: 1072 RIRSSTKKAQTNDSDSDTESKRQAQRSSASESETEDSDDDKKPKRRGRPRSVRKDLVEGF 1131
Query: 1458 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRN 1516
++++ + A K+ + L + + EL+ K V D K++ E I N
Sbjct: 1132 TDAEIRRFIKAYKKFG------------LPLERLECIARDAELVDKSVADLKRLGELIHN 1179
Query: 1517 HKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSE 1571
++ + E+ L +NA G +I + V +V+ I+ E++ E
Sbjct: 1180 SCVSAMQEYEEQ---LKENASEGKGPGKR-RGPTIKISGVQVNVKSIIQHEEEFE 1230
Score = 40.0 bits (92), Expect = 0.019
Identities = 53/240 (22%), Positives = 104/240 (43%), Gaps = 25/240 (10%)
Query: 1404 VRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMK 1463
+R K S++ + +S+ + S + D S+ + ++G P + ++ +
Sbjct: 2 MRNKDKSQEEDSSLHSNASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSE 61
Query: 1464 KIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRN-HKYRSL 1522
++ + S+G + V LP KE P + + D KK+ E + + R
Sbjct: 62 SQSES----ESESAGSKSQPV---LPEAKEKPASKK--ERIADVKKMWEEYPDVYGVRRS 112
Query: 1523 NDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVR--QKIEKEDDSEGEESEEEEE 1580
N Q FN++ E S +S R ++++K++ + E SE+E+E
Sbjct: 113 NRSR-------QEPSRFNIKE----EASSGSESGSPKRRGQRQLKKQEKWKQEPSEDEQE 161
Query: 1581 -GEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDR 1639
G SE E + VK + + R+ + R+K + + RG R K SD+D ++++ R
Sbjct: 162 QGTSAESEPEQKKVKARRPVPRRTVPKPRVK-KQPKTQRGKRKKQDSSDEDDDDDEAPKR 220
Score = 37.0 bits (84), Expect = 0.16
Identities = 37/179 (20%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 1287 EPPLKEEDEV----PDDETVNQMIARHEEEFDLFMRMDLDRRR-----EEARNPKRKPRL 1337
+P LK D++ D + + + + +R L+++ EEA+ KRKPR+
Sbjct: 1287 DPELKLTDKILPVETDKKPQGKQLQTRADYLLKLLRKGLEKKGAVTGGEEAKLKKRKPRV 1346
Query: 1338 MEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTL 1397
+E+++P +K++ +E + + +E + D EK +K ++
Sbjct: 1347 KKENKVPR--LKEEHGIELSSPRHSDNP--------SEEGEVKDDGLEKSPMK--KKQKK 1394
Query: 1398 EEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPP 1456
+E +E ++ SSRK K + + + D +S + KR + P + + P
Sbjct: 1395 KENKENKEKQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPVHITAGSEP 1453
Score = 34.3 bits (77), Expect = 1.0
Identities = 49/240 (20%), Positives = 97/240 (40%), Gaps = 32/240 (13%)
Query: 473 QEYLNSILQHAKDFKEYHRSV-----TGKIQKLTKAVATYHANTEREQKKENERIEKERM 527
Q + SI+QH ++F+ H+S+ K LT V H + E + ++
Sbjct: 1216 QVNVKSIIQHEEEFEMLHKSIPVDPEEKKKYCLTCRVKAAHFDVEWGVEDDS-------- 1267
Query: 528 RRLMAEDEEGY---------------RKLIDQKKDKR-LAYLLQQTDEYVANLTELVRQH 571
R L+ E GY K++ + DK+ LQ +Y+ L +
Sbjct: 1268 RLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRADYLLKLLRKGLEK 1327
Query: 572 KAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGT 631
K A E+ K KK+K E + P + + + + SD P + V+ +
Sbjct: 1328 KGAVTGGEEAKLKKRKPRVKKENKVPRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSP 1387
Query: 632 DAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIP 691
K + E + N +++ R D +E E ++ ++++E+P++ + ++ + P
Sbjct: 1388 MKKKQKKKEN--KENKEKQMSSRKD-KEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGP 1444
Score = 33.9 bits (76), Expect = 1.3
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1546 IYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKA 1605
+ +D + + ++K KE+ + S +++EG++E +S+ + K K K +
Sbjct: 1378 VKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSKDKKEKPK-SGDAKSSS 1436
Query: 1606 QDRLKGGRRRPSRGSRAKPVVSDDDSEEEQE 1636
+ + G + GS P+ D+D + +QE
Sbjct: 1437 KSKRSQGPVHITAGSEPVPIGEDEDDDLDQE 1467
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 396 bits (1017), Expect = e-109
Identities = 264/716 (36%), Positives = 363/716 (50%), Gaps = 104/716 (14%)
Query: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
L+ YQ+ GL WL + + ILADEMGLGKTIQTI+ + YL ++ GPFL++VPLS
Sbjct: 481 LRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLS 540
Query: 814 TLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------QLRSGKFNVLLTTYEYIIKDK 867
TL++W E WA + V Y G +R Q + KFN+LLTTYE ++KDK
Sbjct: 541 TLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDK 600
Query: 868 HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNF 927
L + W ++ VDE HR+KN L + L + + RLL+TGTPLQN L ELW+LL+F
Sbjct: 601 AFLGGLNWAFIGVDEAHRLKNDDSLLYKTL-IDFKSNHRLLITGTPLQNSLKELWSLLHF 659
Query: 928 LLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQ 987
++P F S FE+ G + LHK L PFLLRR+KK+VE
Sbjct: 660 IMPEKFSSWEDFEEEHGK-----GREYGYAS---------LHKELEPFLLRRVKKDVEKS 705
Query: 988 LPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICN 1047
LP KVE +++ +MSALQ+ Y K +L + K KG T +N +M+L+K CN
Sbjct: 706 LPAKVEQILRMEMSALQKQYY-----KWILTRNYKALSKGSKGSTSGFLNIMMELKKCCN 760
Query: 1048 HPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTS 1107
H Y+ + + + F L R+SGK LLD++L +LR ++VL+F QM
Sbjct: 761 HCYLIKPPDNN-----EFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVR 815
Query: 1108 LMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQS 1167
++ I+ +Y YR F + RLDG+ K E R L FN GSE F FLLSTRAGGLG+NL S
Sbjct: 816 MLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLAS 875
Query: 1168 ADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQK 1227
ADTV+IFDSDWNP DLQAQ RAHRIGQ+ +V + RL T SVEE IL AK K+ +D
Sbjct: 876 ADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHL 935
Query: 1228 VIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEE 1287
VIQ R +TG + HT P+ P
Sbjct: 936 VIQ-----------------------------RMDTTGK---TVLHTGSAPSSSTP---- 959
Query: 1288 PPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI 1347
++EE ++ + +E +++P+ M+ DE+
Sbjct: 960 --------------------FNKEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRA 999
Query: 1348 IKDDAEVERLTCEEE---EEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEV 1404
+ E LT +E + K+ + +++ K W + I E +EEE
Sbjct: 1000 ETHENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEE 1059
Query: 1405 RQKKSS------RKR---KRDSDAGSSTPTTSTR-----SRDKDDESKKQKKRGRP 1446
RQK+ R R K+ S GS + +R D E K+ KKRGRP
Sbjct: 1060 RQKELEEIYMLPRMRNCAKQISFNGSEGRRSRSRRYSGSDSDSISEGKRPKKRGRP 1115
Score = 37.4 bits (85), Expect = 0.12
Identities = 49/245 (20%), Positives = 94/245 (38%), Gaps = 67/245 (27%)
Query: 1409 SSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDA 1468
SS+ DSD+GS + ++S + D S++ K + +PP VD
Sbjct: 44 SSQSGSSDSDSGSES---GSQSESESDTSRENKVQAKPPK-----------------VDG 83
Query: 1469 VIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKD 1528
+K S S +++ KK +++ + ++++ ++ +
Sbjct: 84 AEFWKSSPS--------------------ILAVQRSAILKKQQQQQQQQQHQASSNSGSE 123
Query: 1529 VMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDD----------SEGEESEEE 1578
E S EDS + V++K K++D G +SE E
Sbjct: 124 -------------EDSSSSEDS---DDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESE 167
Query: 1579 EEGEEEGSESESRSVKVKIKL-GRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEE 1637
EE E+ + + K K+ RK + + + K G++ + R +DD EE+ +
Sbjct: 168 EEREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDN 227
Query: 1638 DRSGS 1642
D+ S
Sbjct: 228 DKRSS 232
Score = 33.1 bits (74), Expect = 2.3
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 1561 RQKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGS 1620
+Q+ +++ + EE+ E S+ S VK K K K +D G PS+
Sbjct: 107 QQQQQQQHQASSNSGSEEDSSSSEDSDDSSSEVKRK-----KHKDEDWQMSGSGSPSQ-- 159
Query: 1621 RAKPVVSDDDSEEEQEEDRSGSGSEE 1646
S DSE E+E ++S E
Sbjct: 160 ------SGSDSESEEEREKSSCDETE 179
Score = 31.6 bits (70), Expect = 6.6
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 1567 EDDSEGEESEEEEEGEEEGSESESRS-VKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPV 1625
+ S S + + G E GS+SES S + K+ K D + + PS + +
Sbjct: 41 DGSSSQSGSSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSA 100
Query: 1626 VSDDDSEEEQEEDR---SGSGSEED 1647
+ +++Q++ S SGSEED
Sbjct: 101 ILKKQQQQQQQQQHQASSNSGSEED 125
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 394 bits (1012), Expect = e-109
Identities = 267/782 (34%), Positives = 401/782 (51%), Gaps = 110/782 (14%)
Query: 739 TERVDKQSALM--VNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYL 796
T + DKQ + G L YQ++GL WL + + ILADEMGLGKT+QTI + L
Sbjct: 683 TVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSL 742
Query: 797 MEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ--------L 848
+ GP+L+ PLST+ NW EF+ WAP V+Y G +R +
Sbjct: 743 YKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAI 802
Query: 849 RSGK------------FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 896
RSGK F+VLLT+YE I D+ IL I W ++VDE HR+KN+ K +V
Sbjct: 803 RSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRV 862
Query: 897 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL 956
LN+ Y +LLLTGTPLQN L EL+ LLNFL P F + F + F D+
Sbjct: 863 LNS-YKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADI 911
Query: 957 NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
++E+ I ++LH +L P +LRRLK +V +P K E +++ ++S +Q+ Y K +
Sbjct: 912 SKEDQI---KKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY-----KFI 963
Query: 1017 LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLY 1076
L + + KG G +L+N +M L+K CNHPY+F + E G G L
Sbjct: 964 LTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP---VAAVEAPVLPNGSYDGSSLV 1020
Query: 1077 RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG 1136
++SGK LL ++L KLR H+VL+F QMT ++ ++ED+ Y G+KY R+DG R
Sbjct: 1021 KSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1080
Query: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
+ FN PG++ F FLLSTRAGGLG+NL +ADTVII+DSDWNPH D+QA RAHRIGQ
Sbjct: 1081 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN 1140
Query: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ 1256
+V + R T SVEE+I AK K+ + V++ G+ + S ++ L IL+ +
Sbjct: 1141 KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE--LDDILKFGTE 1198
Query: 1257 D-----------------------ESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEE 1293
+ +S + SA H + PP G N D+E+ +
Sbjct: 1199 ELFKDDVEGMMSQGQRPVTPIPDVQSSKGGNLAASAKKKHGSTPP-GDNKDVEDSSVIHY 1257
Query: 1294 DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEE----DELPSWIIK 1349
DD +++++ R+++ D +L E + K ++ E +E+ IIK
Sbjct: 1258 ----DDAAISKLLDRNQDATD---DTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIK 1310
Query: 1350 DDAEVE--------RLTCEEEEEKM---FGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLE 1398
+ V+ R E+++E + G+G R RK+V+Y+D+ E Q
Sbjct: 1311 QEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDASQEDQ----------- 1359
Query: 1399 EIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNL 1458
E ++E+ +S + GS R + ++Q +R + +++ P PP L
Sbjct: 1360 EWQDELSDNQS------EYSIGSEDEDEDFEERPEGQSGRRQSRR-QLKSDRDKPLPPLL 1412
Query: 1459 TK 1460
+
Sbjct: 1413 AR 1414
Score = 32.3 bits (72), Expect = 3.9
Identities = 50/180 (27%), Positives = 72/180 (40%), Gaps = 35/180 (19%)
Query: 1269 ASFAHTAPPPAGVNPDLEEPPLKEEDEV-PDDETVNQMIARHEEEFDLFMRMDLDRRREE 1327
AS AH P P G+ PD E L DE P + Q + E
Sbjct: 1553 ASPAHLLPAPLGL-PDKMEAQLGYMDEKDPGAQKPRQPL-------------------EV 1592
Query: 1328 ARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQ 1387
P R+ ED+ S K+ A ER EE EK +++ + L EK+
Sbjct: 1593 QALPAALDRVESEDKHESPASKERAREER---PEETEK----APPSPEQLPREEVLPEKE 1645
Query: 1388 WLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDK--DDESKKQKKRGR 1445
K +++ L I + SS R D+ A P + ++ DK DDE KK+ K+G+
Sbjct: 1646 --KILDKLELSLIHS---RGDSSELRPDDTKAEEKEPIETQQNGDKEEDDEGKKEDKKGK 1700
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 393 bits (1009), Expect = e-109
Identities = 307/981 (31%), Positives = 462/981 (47%), Gaps = 137/981 (13%)
Query: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
Query: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
Query: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
Query: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
Query: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
Query: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
Query: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
E+I AK K+ + V++ G+ + S ++ L IL+ ++
Sbjct: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235
Query: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
+ D E KEED D+E + +++ R++ D D+ E
Sbjct: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283
Query: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373
+ K ++ E +E+ IIK + V+ R E+++E + G+G R
Sbjct: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
Query: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419
RK+V+Y+D+ E Q ++ E+ +E E RQ K + ++D +
Sbjct: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403
Query: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473
G + +R + + G PP + + K+ K V +++
Sbjct: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1463
Query: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530
G SE F R+ L L R V KK++E + S+ +L D
Sbjct: 1464 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1522
Query: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575
+ + + + S ++ S TS +R +EKE+ EE
Sbjct: 1523 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1582
Query: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPS---RGSRAKPV 1625
E+ E E+E+ + LG RK +D + G G P RG R K
Sbjct: 1583 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1642
Query: 1626 VSDDDSEEEQEEDRSGSGSEE 1646
E +E+ G E
Sbjct: 1643 TESTPGERGEEKPLDGQEHRE 1663
Score = 38.5 bits (88), Expect = 0.054
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
Query: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
Query: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
Query: 690 IPDP 693
P P
Sbjct: 1394 KPLP 1397
Score = 32.0 bits (71), Expect = 5.1
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643
+K++AEN E + GE ++ E S P +E KI + P + +
Sbjct: 1572 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1628
Query: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ +
Sbjct: 1629 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1674
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 393 bits (1009), Expect = e-109
Identities = 307/981 (31%), Positives = 462/981 (47%), Gaps = 137/981 (13%)
Query: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 793 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 852
Query: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 853 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 912
Query: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 913 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 971
Query: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 972 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 1018
Query: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 1019 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1073
Query: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1074 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1130
Query: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1131 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1190
Query: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1191 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
Query: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
E+I AK K+ + V++ G+ + S ++ L IL+ ++
Sbjct: 1251 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1294
Query: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
+ D E KEED D+E + +++ R++ D D+ E
Sbjct: 1295 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1342
Query: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373
+ K ++ E +E+ IIK + V+ R E+++E + G+G R
Sbjct: 1343 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1402
Query: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419
RK+V+Y+D+ E Q ++ E+ +E E RQ K + ++D +
Sbjct: 1403 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1462
Query: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473
G + +R + + G PP + + K+ K V +++
Sbjct: 1463 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1522
Query: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530
G SE F R+ L L R V KK++E + S+ +L D
Sbjct: 1523 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1581
Query: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575
+ + + + S ++ S TS +R +EKE+ EE
Sbjct: 1582 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1641
Query: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPS---RGSRAKPV 1625
E+ E E+E+ + LG RK +D + G G P RG R K
Sbjct: 1642 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSA 1701
Query: 1626 VSDDDSEEEQEEDRSGSGSEE 1646
E +E+ G E
Sbjct: 1702 TESTPGERGEEKPLDGQEHRE 1722
Score = 38.5 bits (88), Expect = 0.054
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 1292 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1344
Query: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 1345 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1392
Query: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 1393 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1452
Query: 690 IPDP 693
P P
Sbjct: 1453 KPLP 1456
Score = 33.9 bits (76), Expect = 1.3
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 1565 EKEDDSEGEESEEEEEGEEEGSESESRSVK 1594
E+E++ E SEEEEE EEEG E E V+
Sbjct: 8 EEEEEEEMVVSEEEEEEEEEGDEEEEEEVE 37
Score = 32.0 bits (71), Expect = 5.1
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 585 KKKKAENAEGQTPAIGPDGEPLD-ETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWL 643
+K++AEN E + GE ++ E S P +E KI + P + +
Sbjct: 1631 EKEEAENQEEKPEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPG---VPGEM 1687
Query: 644 EMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
E PGY R D E+S +E E EE+P L +E ++ P+ ++ D+ +
Sbjct: 1688 EPEPGY----RGDREKSATESTPGERGEEKP-------LDGQEHRERPEGETGDLGK 1733
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 392 bits (1006), Expect = e-108
Identities = 308/984 (31%), Positives = 465/984 (47%), Gaps = 140/984 (14%)
Query: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
G L YQ++GL WL + + ILADEMGLGKTIQTI + L + GPFL+ P
Sbjct: 734 GTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAP 793
Query: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-------------------RAFVPQLRSG- 851
LST+ NW EF WAP V+Y G +R +AF + +
Sbjct: 794 LSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQV 853
Query: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
KF+VLLT+YE I D+ L IRW ++VDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 854 KFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNG-YKIDHKLLLTG 912
Query: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
TPLQN L EL+ LLNFL P F + F + F D+++E+ I ++LH +
Sbjct: 913 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEF----------ADISKEDQI---KKLHDL 959
Query: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 960 LGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKY-----ILTRNFEALNSRGGGN 1014
Query: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
+L+N +M L+K CNHPY+F + E G +G L ++SGK LL ++L K
Sbjct: 1015 QVSLLNIMMDLKKCCNHPYLFP---VAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRK 1071
Query: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
L+ H+VL+F QMT ++ ++ED+ Y G+KY R+DG R + FN PG++ F
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1131
Query: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
FLLSTRAGGLG+NL +ADTVIIFDSDWNPH D+QA RAHRIGQ N+V + R T SVE
Sbjct: 1132 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Query: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
E+I AK K+ + V++ G+ + S ++ L IL+ ++
Sbjct: 1192 ERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQE--LDDILKFGTEE-------------- 1235
Query: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVP---DDETVNQMIARHEEEFDLFMRMDLDRRREEA 1328
+ D E KEED D+E + +++ R++ D D+ E
Sbjct: 1236 ---------LFKDENEGENKEEDSSVIHYDNEAIARLLDRNQ---DATEDTDVQNMNEYL 1283
Query: 1329 RNPKRKPRLMEE----DELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRH 1373
+ K ++ E +E+ IIK + V+ R E+++E + G+G R
Sbjct: 1284 SSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRV 1343
Query: 1374 RKEVDYSDSLTEKQWLKA-------IEEGTLEEIEEEVRQKKSSRKRKRD-------SDA 1419
RK+V+Y+D+ E Q ++ E+ +E E RQ K + ++D +
Sbjct: 1344 RKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARV 1403
Query: 1420 GSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPN------PPNLTKKMKKIVDAVIKYK 1473
G + +R + + G PP + + K+ K V +++
Sbjct: 1404 GGNIEVLGFNTRQRKAFLNAVMRWGMPPQDAFTTQWLVRDLRGKTEKEFKAYVSLFMRHL 1463
Query: 1474 DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDF---KKIKERIRNHKYRSLNDLEKDVM 1530
G SE F R+ L L R V KK++E + S+ +L D
Sbjct: 1464 -CEPGADGSETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHINGRWSMPELMPDPS 1522
Query: 1531 LLCQNAQTFN--LEGSLIYEDSIVLQSVFTS-------------VRQKIEKEDDSEGEES 1575
+ + + + S ++ S TS +R +EKE+ EE
Sbjct: 1523 ADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKEEAENQEEK 1582
Query: 1576 EEEEEGEEEGSESESRSVKVKIKLG-----RKEKAQDRLKG--GRRRPSRGSRAKPVVSD 1628
E+ E E+E+ + LG RK +D + G G P G R S+
Sbjct: 1583 PEKNSRIGEKMETEADAPSPAPSLGERLEPRKIPLEDEVPGVPGEMEPEPGYRGDREKSE 1642
Query: 1629 DDSEEEQ------EEDRSGSGSEE 1646
D + + +E RS EE
Sbjct: 1643 DVKGDRELRPGPRDEPRSNGRREE 1666
Score = 38.5 bits (88), Expect = 0.054
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 511 TEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQ 570
TE K ENE KE ++ D E +L+D+ +D + TD V N+ E +
Sbjct: 1233 TEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQD-----ATEDTD--VQNMNEYLSS 1285
Query: 571 HKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD-GEPLDETSQMSDLPVKVIHVESGKILT 629
K AQ ++ K ++ + E + Q + PD E L H E +
Sbjct: 1286 FKVAQYVVREEDKIEEIEREIIK-QEENVDPDYWEKLLRH-----------HYEQQQEDL 1333
Query: 630 GTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKK 689
+ K ++ + N + + SE S EEE+E+ +E+P+ + + +K
Sbjct: 1334 ARNLGKGKRVRKQVNYNDAAQEDQDNQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKD 1393
Query: 690 IPDP 693
P P
Sbjct: 1394 KPLP 1397
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 390 bits (1003), Expect = e-108
Identities = 251/722 (34%), Positives = 381/722 (52%), Gaps = 82/722 (11%)
Query: 752 GVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVP 811
G L YQ++GL WL + + ILADEMGLGKT+QT + L + GPFL+ P
Sbjct: 724 GTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAP 783
Query: 812 LSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQ--------LRSGK----------- 852
LST+ NW EF+ WAP + V+Y G +R +R GK
Sbjct: 784 LSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASV 843
Query: 853 -FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
F+VLLT+YE I D IL I W +IVDE HR+KN+ K +VLN Y +LLLTG
Sbjct: 844 KFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNG-YSLQHKLLLTG 902
Query: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
TPLQN L EL+ LLNFL P F + F + F D+ +E+ I ++LH +
Sbjct: 903 TPLQNNLEELFHLLNFLTPERFHNLEGFLEEF----------ADIAKEDQI---KKLHDM 949
Query: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGG 1031
L P +LRRLK +V +P K E +++ ++S +Q+ Y++ +L + + +G G
Sbjct: 950 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKY-----ILTRNFEALNARGGGN 1004
Query: 1032 TKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPK 1091
+L+N +M L+K CNHPY+F + E G+ G L RASGK LL ++L
Sbjct: 1005 QVSLLNVVMDLKKCCNHPYLFP---VAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKN 1061
Query: 1092 LRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFI 1151
L+ H+VL+F QMT ++ ++ED+ + G+KY R+DG R + FN PG++ F
Sbjct: 1062 LKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFC 1121
Query: 1152 FLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1211
FLLSTRAGGLG+NL +ADTVII+DSDWNPH D+QA RAHRIGQ +V + R T SVE
Sbjct: 1122 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1181
Query: 1212 EKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASF 1271
E+I AK K+ + V++ G+ + S ++ L IL+ ++ + +T G
Sbjct: 1182 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQE--LDDILKFGTEELFKDEATDGG---- 1235
Query: 1272 AHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREE---A 1328
G N + E+ + DD+ + +++ R+++E + ++ A
Sbjct: 1236 --------GDNKEGEDSSVIHY----DDKAIERLLDRNQDETEDTELQGMNEYLSSFKVA 1283
Query: 1329 RNPKRKPRLMEEDELPSWIIKDDAEVE--------RLTCEEEEEKM---FGRGSRHRKEV 1377
+ R+ + EE+E+ IIK + V+ R E+++E + G+G R RK+V
Sbjct: 1284 QYVVREEEMGEEEEVEREIIKQEESVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQV 1343
Query: 1378 DYSD-SLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDE 1436
+Y+D S ++ W ++ + + +S + D D S P +R ++D+
Sbjct: 1344 NYNDGSQEDRDWQD-------DQSDNQSDYSVASEEGDEDFDERSEAPRRPSRKGLRNDK 1396
Query: 1437 SK 1438
K
Sbjct: 1397 DK 1398
Score = 33.9 bits (76), Expect = 1.3
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 650 EVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIEN 709
EVA RSDSE S ++++++ P+ + +E+++ D D D + ++E+
Sbjct: 98 EVALRSDSEGSDYTPGKKKKKKLGPKKEKKSKSKRKEEEEEEDDDDDSKEPKSSAQLLED 157
Query: 710 -AKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSL 768
+D+D + S+ R L +Y A + V + ++ + V K + G +W
Sbjct: 158 WGMEDIDHVF--SEEDYRTLTNYKAFSQFVRPLIAAKNPKI--AVSKMMMVLGAKWREFS 213
Query: 769 YNNNLNG 775
NN G
Sbjct: 214 TNNPFKG 220
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 382 bits (982), Expect = e-105
Identities = 267/801 (33%), Positives = 405/801 (50%), Gaps = 129/801 (16%)
Query: 497 IQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQ 556
+++L AV T A E E++ E +E+ER +++ + + + + + +RL +LL++
Sbjct: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
Query: 557 TDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLP 616
++ Y L + Q Q+ ++KKK+K ++K E+
Sbjct: 75 SNIYSKFLLTKMEQQ---QLEEQKKKEKLERKKES------------------------- 106
Query: 617 VKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQA 676
+ V+ GK K + + Y ++ EE S ++ ++E E +
Sbjct: 107 ---LKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENS 163
Query: 677 AQPPTLPVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
+ L VE+ +K D +S D +SE + +N K D
Sbjct: 164 SST-NLCVEDLQKNKDSNSIIKDRLSET----VRQNTKFFFDP----------------- 201
Query: 734 VAHAVTERVD-KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
V + V +Q GV++ YQ++G+EWL L+ N +NGILADEMGLGKT+Q IA
Sbjct: 202 VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIAT 261
Query: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQL--RS 850
I LM + + GPFL+ PLSTL NW EF ++ P + + Y G+ R+ V + R
Sbjct: 262 IA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRK 320
Query: 851 GKFN---VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
G V++T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A +L
Sbjct: 321 GTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKL 379
Query: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIR 966
LLTGTPLQN L ELW+LLNFLLP +F +FE WF+ + T E + E E ++
Sbjct: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLH 438
Query: 967 RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK 1026
LH++L PFLLRRLK +V ++P K E V+ +S Q + Y + + + GS + +
Sbjct: 439 MLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKE 498
Query: 1027 --------KGKGGTKTLMN----------------------------------------- 1037
+ K T+ +N
Sbjct: 499 TIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNL 558
Query: 1038 ----TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLR 1093
+M LRK CNHPY+ ++ + ++ +V SGKF +LDR+LP+L+
Sbjct: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTN------SGKFLILDRMLPELK 612
Query: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
HKVLLF QMTS++ I+ DY R F + RLDG+ +R + +FN E FIFL
Sbjct: 613 KRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFL 671
Query: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
+STRAGGLG+NL +ADTVII+DSDWNP DLQAQDR HRIGQ V V RL T N++++K
Sbjct: 672 VSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQK 731
Query: 1214 ILAAAKYKLNVDQKVIQAGMF 1234
I+ A K +++ +I F
Sbjct: 732 IVERAAAKRKLEKLIIHKNHF 752
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 367 bits (943), Expect = e-101
Identities = 214/498 (42%), Positives = 300/498 (60%), Gaps = 38/498 (7%)
Query: 751 NGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIV 810
N L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I + Y + K I+GPFL+I
Sbjct: 965 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIA 1023
Query: 811 PLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV--------PQLR----SGKFNVLLT 858
PLST+ NW EF W V V Y GS A+RR PQ R S KF+ ++T
Sbjct: 1024 PLSTIPNWEREFRTWTELNVVV-YHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
Query: 859 TYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKL 918
T+E I+ D L I W+ +++DE HR+KN +CKL + L + ++LLTGTPLQN +
Sbjct: 1083 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLE-HKVLLTGTPLQNTV 1141
Query: 919 PELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLR 978
EL++LL+FL P+ F S +TF Q F DL EE + ++L +L+P +LR
Sbjct: 1142 EELFSLLHFLEPSRFPSETTFMQEFG----------DLKTEEQV---QKLQAILKPMMLR 1188
Query: 979 RLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG-VLLTDGSEKDKKGKGGTKTLMN 1037
RLK++VE L K E +I+ +++ +Q+ YR + K L+ G G+ L+N
Sbjct: 1189 RLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGG-----GQANVPNLLN 1243
Query: 1038 TIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLDRILPKLR 1093
T+M+LRK CNHPY+ EE E T Q + +A+GK L+D++LPKL+
Sbjct: 1244 TMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLK 1303
Query: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
A H+VL+F QM + I+EDY R + Y R+DG + R + F++P S+ F+FL
Sbjct: 1304 AGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFL 1363
Query: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
L TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V++ RL T NS E +
Sbjct: 1364 LCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYERE 1423
Query: 1214 ILAAAKYKLNVDQKVIQA 1231
+ A KL +D+ V+Q+
Sbjct: 1424 MFDKASLKLGLDKAVLQS 1441
Score = 53.9 bits (128), Expect = 1e-06
Identities = 82/336 (24%), Positives = 116/336 (34%), Gaps = 53/336 (15%)
Query: 48 GPPSAGHPIPTQGPGGYP--QDNMHQMHK-PMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
GP H +P Q P P + ++ Q H P ++H + ++ PR++
Sbjct: 231 GPGHLSH-VPQQSPSMAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQ------QG 283
Query: 105 GMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADPQALGQ 164
+ P SQ PSP + S P S + G ++G Q LG
Sbjct: 284 AVRPQTLNFSSRSQTVPSPTINNSGQYSRYPYSNLNQGLVNNTGMN---------QNLGL 334
Query: 165 QNRGPTPFNQNQLHQLRA---QIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLP 221
N TP NQ+ A + + L QP+ + + M Q Q
Sbjct: 335 TNN--TPMNQSVPRYPNAVGFPSNSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYAS 392
Query: 222 PPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG--QPPGG 279
PP +S P P P P G PNMP P PS PPG G Q G
Sbjct: 393 PPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVG-SYPNMPHPQPSHQPPGAMGIGQRNMG 451
Query: 280 P-----PKPW---------------PEG-PMANAAAPTSTPQKLIPPQPTGRPSPAPPAV 318
P +P+ P G P P + ++LIP Q P+ +
Sbjct: 452 PRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVGLGDPQAIQERLIPGQQHPGQQPSFQQL 511
Query: 319 PPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITP 354
P PP PG Q +P P HQ +++ P
Sbjct: 512 PTC-----PPLQPHPGLHHQSSPPHPHHQPWAQLHP 542
Score = 52.4 bits (124), Expect = 4e-06
Identities = 90/380 (23%), Positives = 120/380 (31%), Gaps = 79/380 (20%)
Query: 20 PGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQD---NMHQMHKPM 76
P P P P P PS GPP+ GHP Q G Y +M Q +P
Sbjct: 165 PQPQP-----PQPAPS------------GPPAQGHPQHMQQMGSYMARGDFSMQQHGQPQ 207
Query: 77 ESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPA 136
+ M + + + GH P SP S + S H S+ +
Sbjct: 208 QRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPSMAPSLRH-SVQQFHHHPSTALHG 266
Query: 137 SGPSSGPQMSSGPGGAPLDGA-DPQALGQQNRG---PTPFNQNQLHQLRAQIMAYKMLAR 192
+ P+ S P P GA PQ L +R P+P N Q Y
Sbjct: 267 ESVAHSPRFSPNP---PQQGAVRPQTLNFSSRSQTVPSPTINNS-----GQYSRYPYSNL 318
Query: 193 GQPLPDHLQMAVQ-GKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSR 251
Q L ++ M G M Q +P P +A G +
Sbjct: 319 NQGLVNNTGMNQNLGLTNNTPMNQSVPRYP----NAVG-------------------FPS 355
Query: 252 PHGMGGPNMPPPGPSGVPPGM------PGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPP 305
G G + P PSG M P QP G P P PM + P TP + P
Sbjct: 356 NSGQGLMHQQPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRP 415
Query: 306 QPTG----------RPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPI 355
G P P P PP A + + P Q P + + +T
Sbjct: 416 GSAGIPMEVGSYPNMPHPQPSHQPPGAMGI-GQRNMGPRNMQQSRPFIGMSSAPRELTGH 474
Query: 356 QKPR-----GLDPVEILQER 370
+P GL + +QER
Sbjct: 475 MRPNGCPGVGLGDPQAIQER 494
Score = 41.2 bits (95), Expect = 0.008
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 543 DQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPD 602
D K+K L L+ Y ++ V ++ + +K K+K+ + N
Sbjct: 2584 DAPKNKDLVEWLKLHPTYTVDMPSYVPKNADVLFSSFQKPKQKRHRCRNPN--------- 2634
Query: 603 GEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAP 653
LD + + V V++ +GK + G AP L WLE NP + VAP
Sbjct: 2635 --KLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 2683
Score = 38.5 bits (88), Expect = 0.054
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 561 VANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVI 620
V L L HK ++ E + K + + T I G+ LD D + VI
Sbjct: 2519 VEGLDLLFMSHKRTSLSAEDAEVTKAFEEDIETPPTRNIPSPGQ-LDP-----DTRIPVI 2572
Query: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEV 651
++E G L G DAPK L WL+++P Y V
Sbjct: 2573 NLEDGTRLVGEDAPKNKDLVEWLKLHPTYTV 2603
Score = 36.2 bits (82), Expect = 0.27
Identities = 56/239 (23%), Positives = 89/239 (37%), Gaps = 36/239 (15%)
Query: 1434 DDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE 1493
DDE P E+ + + ++KI + V+ + QL E +
Sbjct: 2033 DDEPPDLSSIIEPITEERASRTLYRIELLRKIREQVLHHP------QLGERLKLCQPSLD 2086
Query: 1494 LPEYYELIRKPVDFK--KIKERIRNHKYRSLNDLEKDVMLLCQN---------------- 1535
LPE++E R D K + Y LND E + +N
Sbjct: 2087 LPEWWECGRHDRDLLVGAAKHGVSRTDYHILNDPELSFLDAHKNFAQNRGAGNTSSLNPL 2146
Query: 1536 ----AQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK--EDDSEGEESEEEEE--GEEEGSE 1587
QT + S +D VL+ V + ++ EG+E EEE + G+E E
Sbjct: 2147 AVGFVQTPPVISSAHIQDERVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQE 2206
Query: 1588 SESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSR--AKPVVSDDDSEEEQEEDRSGSGS 1644
E+ + VK +L E D G + +GS + + DDD EE + +G+ S
Sbjct: 2207 CEAEASSVKNELKGVEVGAD--TGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVS 2263
Score = 34.3 bits (77), Expect = 1.0
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Query: 1336 RLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEG 1395
R++E+ E ++ A E+ +EEEE+ G G ++E + +++ + K LK +E G
Sbjct: 2166 RVLEQAEGKVEEPENPAAKEKCEGKEEEEETDGSGKESKQECE-AEASSVKNELKGVEVG 2224
Query: 1396 T----------------LEEIEEEVRQKKS--------SRKRKRDSDAGSSTPTTSTRSR 1431
E++E++ + ++S SR + D ++ +S T +R
Sbjct: 2225 ADTGSKSISEKGSEEDEEEKLEDDDKSEESSQPEAGAVSRGKNFDEESNASMSTARDETR 2284
Query: 1432 D-----KDDESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQL 1481
D D S Q R A P + ++ I +AV+K K + RQ+
Sbjct: 2285 DGFYMEDGDPSVAQLLHERTFAFSFWPKDRVMINRLDNICEAVLKGKWPVNRRQM 2339
Score = 33.1 bits (74), Expect = 2.3
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 1397 LEEIEEEVRQKKSSRKR-------------KRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1443
L IE++ +QKK +K K D G + S D E KK+KKR
Sbjct: 587 LPSIEQQPQQKKKKKKNNHIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKKKR 646
Query: 1444 GRPPAEKLSPNPPNLTKKMKK 1464
+ + P P K+ K+
Sbjct: 647 SKAKKDPKEPKEPKEKKEPKE 667
Score = 31.2 bits (69), Expect = 8.7
Identities = 34/141 (24%), Positives = 58/141 (41%), Gaps = 31/141 (21%)
Query: 554 LQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS 613
L ++D+Y+ ++ + +Q KKKKKK AE + G D
Sbjct: 580 LVKSDDYLPSIEQQPQQ----------KKKKKKNNHIVAEDPSKGFGKD----------- 618
Query: 614 DLPVKVIHVESGK-ILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEE 672
D P V + E + L G+ K + + + +P E +E++E +E +
Sbjct: 619 DFPGGVDNQELNRNSLDGSQEEKKKKKRSKAKKDP---------KEPKEPKEKKEPKEPK 669
Query: 673 QPQAAQPPTLPVEEKKKIPDP 693
P+A + P P E+K K P
Sbjct: 670 TPKAPKIPKEPKEKKAKTATP 690
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 362 bits (928), Expect = 2e-99
Identities = 313/1039 (30%), Positives = 474/1039 (45%), Gaps = 141/1039 (13%)
Query: 301 KLIPPQPTGRPSPA-PPAVPPAA-SPVMPPQTQSPGQ-PAQ--PAPMVPLHQKQSRITPI 355
+++P P+ +P P PP+ P S V Q PGQ P Q P+ + Q Q+ +
Sbjct: 73 QIVPQPPSSQPQPQQPPSTQPVTLSSVQQAQIMGPGQSPGQRLSVPVKVVLQPQAGSSQ- 131
Query: 356 QKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQ 415
GL V++L E + P S A K +E + Q
Sbjct: 132 GASSGLSVVKVLSASEVAALSS-----------PASSAPHSGGKTGMEENR----RLEHQ 176
Query: 416 LRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQ-E 474
+QE + + A+A R ++ R E + + E E+KRR+K E
Sbjct: 177 KKQE------KANRIVAEAIARARARGEQNIPRVLNEDELPSVRPEEEGEKKRRKKSAGE 230
Query: 475 YLNSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAED 534
L + K K S T KL +R +N +E + ++
Sbjct: 231 RLKE--EKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDE 288
Query: 535 EEGYRKLIDQKKDKRLAYL----LQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAE 590
E +K ++ KR Y ++ TD+ ++ K + E
Sbjct: 289 ESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGPIKPEPILPE----------- 337
Query: 591 NAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPK---AGQLEAWLEMNP 647
P PDGE L + P + K+L+ K +GQ E
Sbjct: 338 ------PVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRIVKKELPSGQYTEAEEFFV 391
Query: 648 GYEVAPRSDSEESGSEEEEEEEEEEQP------QAAQPPTLPVEEKKKIPDPDSDDVSEV 701
Y+ E + + E+++ Q + AQ E+++ +PD +V +
Sbjct: 392 KYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPF-NPDYVEVDRI 450
Query: 702 -DARHIIEN------------------------AKQDVDD----EYGVSQALARGLQSYY 732
D H I+ K+DVD+ E+ Q+ L+
Sbjct: 451 LDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSRHPELKRVN 510
Query: 733 AVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
+ ++++ L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+IA
Sbjct: 511 RPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAF 570
Query: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP------ 846
+ + + I+GPFL+I PLST++NW EF+ W + + Y GS A+R+
Sbjct: 571 LQEVY-NVGIHGPFLVIAPLSTITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCK 628
Query: 847 ----QLRSG--KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH 900
+L G KF+ L+TT+E I+ D L +I W+ +I+DE HR+KN +CKL L H
Sbjct: 629 DSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLK-H 687
Query: 901 YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE 960
++LLTGTPLQN + EL++LL+FL P+ F S S F + F DL EE
Sbjct: 688 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFG----------DLKTEE 737
Query: 961 TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD 1020
+ ++L +L+P +LRRLK++VE L K E +I+ +++ +Q+ YR + K
Sbjct: 738 QV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS 794
Query: 1021 GSEKDKKGKGGTK--TLMNTIMQLRKICNHPYMFQHIEES----FSEHLGFTGGIVQGLD 1074
KG G T L+NT+M+LRK CNHPY+ EE F E
Sbjct: 795 ------KGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQA 848
Query: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
+ R++GK L+D++LPKL+A HKVL+F QM + I+EDY R + Y R+DG +
Sbjct: 849 MVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNL 908
Query: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
R + F++P S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIG
Sbjct: 909 RQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIG 968
Query: 1195 QQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQA-----------GMFDQKSSSHER 1243
Q V+V RL T NS E ++ A KL +D+ V+Q+ F +K
Sbjct: 969 QSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLL 1028
Query: 1244 RAFLQAILEHEEQDESRHC 1262
R A + E+ + S+ C
Sbjct: 1029 RKGAYAAIMEEDDEGSKFC 1047
Score = 38.5 bits (88), Expect = 0.054
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 581 KKKKKKKKAENAEGQTPAIGPDGEPLDETSQMS---DLPVKVIHVESGKILTGTDAPKAG 637
KKK +KK E E ++E + + + + VI+ G +L G DAP+
Sbjct: 2006 KKKGNRKKLVELEV---------ECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRA 2056
Query: 638 QLEAWLEMNPGYEVAPR 654
+LE WL+ +P + V PR
Sbjct: 2057 ELEMWLQGHPEFAVDPR 2073
Score = 35.0 bits (79), Expect = 0.60
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 1325 REEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT 1384
R AR + PR++ EDELPS +++ E +R +K G + K S
Sbjct: 192 RARARGEQNIPRVLNEDELPSVRPEEEGEKKR------RKKSAGERLKEEKPKKSKTSGA 245
Query: 1385 EKQWLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKR 1443
K K+ L I V +K RKR SD S +S +D+ES QK+R
Sbjct: 246 SKTKGKS----KLNTITPVVGKK---RKRNTSSD-NSDVEVMPAQSPREDEESSIQKRR 296
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 358 bits (920), Expect = 2e-98
Identities = 265/804 (32%), Positives = 389/804 (48%), Gaps = 124/804 (15%)
Query: 453 TEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHR-----SVTGKIQKLTKAVATY 507
TE + Q++ + +R+K+ E L DFK +V G + + +T
Sbjct: 228 TESTDSQKRRSGRQVKRRKYNEDL--------DFKVVDDDGETIAVLGAGRTSALSASTL 279
Query: 508 HANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYV----AN 563
E + + IEK + + E G + D L Y+ + Y+ A
Sbjct: 280 AWQAEEPPEDDANIIEKILASKTVQEVHPG-----EPPFDLELFYVKYRNFSYLHCKWAT 334
Query: 564 LTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVE 623
+ EL + + AQ K + K+ + K E PD +D ++V H +
Sbjct: 335 MEELEKDPRIAQKIKRFRNKQAQMKHIFTEPDEDLFNPDYVEVDRI-------LEVAHTK 387
Query: 624 SGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLP 683
+ TG + L W + EES E EE+ + + + LP
Sbjct: 388 DAE--TGEEVTH--YLVKWCSL----------PYEESTWELEEDVDPAKVKEFESLQVLP 433
Query: 684 VEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVD 743
E K + P SD +++ +N+ Q
Sbjct: 434 --EIKHVERPASDSWQKLEKSREYKNSNQ------------------------------- 460
Query: 744 KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRIN 803
L++YQ++G+ WL+ + N N ILADEMGLGKTIQ+I ++ + + I+
Sbjct: 461 ----------LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFL-RGIH 509
Query: 804 GPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV------------PQLRSG 851
GPFLII PLST++NW EF W + + Y GS +R+ P
Sbjct: 510 GPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVF 568
Query: 852 KFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTG 911
KF+V++TT+E I+ D L KI W +I+DE HR+KN +CKL + L ++LLTG
Sbjct: 569 KFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKL-MALEHKVLLTG 627
Query: 912 TPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKV 971
TPLQN + EL++LLNFL P+ F S + F + F DL EE + ++L +
Sbjct: 628 TPLQNSVEELFSLLNFLEPSQFPSETAFLEEFG----------DLKTEEQV---KKLQSI 674
Query: 972 LRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKG 1030
L+P +LRRLK +VE L K E +I+ +++ +Q+ YR + K LT G+ +
Sbjct: 675 LKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHNM--- 731
Query: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGI----VQGLDLYRASGKFELLD 1086
L+NT+M+LRK CNHPY+ EE E T Q + +A+GK L+D
Sbjct: 732 --PNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLID 789
Query: 1087 RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG 1146
++LPKL A HKVL+F QM + I+EDY R + Y R+DG + R + F +P
Sbjct: 790 KLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPD 849
Query: 1147 SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT 1206
S+ F+FLL TRAGGLG+NL +ADT IIFDSDWNP DLQAQ R HRIGQ V+V RL T
Sbjct: 850 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 909
Query: 1207 VNSVEEKILAAAKYKLNVDQKVIQ 1230
NS E ++ A KL +D+ V+Q
Sbjct: 910 RNSYEREMFDKASLKLGLDKAVLQ 933
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 354 bits (908), Expect = 4e-97
Identities = 226/585 (38%), Positives = 327/585 (55%), Gaps = 55/585 (9%)
Query: 711 KQDVD----DEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLV 766
K+DVD +E+ QA + + +++D+ L++YQ++GL WL+
Sbjct: 813 KEDVDLAKIEEFEQLQASRPDTRRLDRPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLL 872
Query: 767 SLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA 826
+ N N ILADEMGLGKTIQ+I + Y + I GPFLII PLST++NW EF W
Sbjct: 873 FNWYNRRNCILADEMGLGKTIQSITFL-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT 931
Query: 827 PSVVKVSYKGSPAARRAFVPQ-----------LRSG-KFNVLLTTYEYIIKDKHILAKIR 874
V V Y GS +R+ +R +F ++TT+E I+ L I
Sbjct: 932 DINVVV-YHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILGGCGELNAIE 990
Query: 875 WKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFK 934
W+ +I+DE HR+KN +CKL + L + ++LLTGTPLQN + EL++LL+FL P F
Sbjct: 991 WRCVIIDEAHRLKNKNCKLLEGLKLMNLE-HKVLLTGTPLQNTVEELFSLLHFLEPLRFP 1049
Query: 935 SCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEY 994
S STF Q F DL EE + ++L +L+P +LRRLK++VE +L K E
Sbjct: 1050 SESTFMQEFG----------DLKTEEQV---QKLQAILKPMMLRRLKEDVEKKLAPKEET 1096
Query: 995 VIKCDMSALQRVLYRHMQAKGV-LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQ 1053
+I+ +++ +Q+ YR + K L+ G+ G+ L+NT+M+LRK CNHPY+ +
Sbjct: 1097 IIEVELTNIQKKYYRAILEKNFSFLSKGA-----GQTNVPNLVNTMMELRKCCNHPYLIK 1151
Query: 1054 HIEES----FSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLM 1109
EE F + + +++GK L+D++LPK++A HKVL+F QM +
Sbjct: 1152 GAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCL 1211
Query: 1110 TIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSAD 1169
I+EDY ++ + Y R+DG + R + F++P S+ F+FLL TRAGGLG+NL +AD
Sbjct: 1212 DILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAAD 1271
Query: 1170 TVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
T IIFDSDWNP DLQAQ R HRIGQ V+V RL T NS E ++ A KL +D+ V+
Sbjct: 1272 TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVL 1331
Query: 1230 QA--------GMFDQKSSSH----ERRAFLQAILEHEEQDESRHC 1262
Q+ G Q S RR AI+E EE + S+ C
Sbjct: 1332 QSMSGRESNVGGIQQLSKKEIEDLLRRGAYGAIME-EEDEGSKFC 1375
Score = 43.9 bits (102), Expect = 0.001
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 594 GQTPAIG---PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGY- 649
G PA+ P G P E+ PV VI+++ G L G DAPK LE WL+ +PGY
Sbjct: 2451 GINPALSYTQPQGIPDTES------PVPVINLKDGTRLAGDDAPKRKDLEKWLKEHPGYV 2504
Query: 650 ----EVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEK---------KKIPDPDSD 696
PR E +++ P +L EE+ +K+ +
Sbjct: 2505 EDLGAFIPRMQLHE--GRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAP 2562
Query: 697 DVSEVDARHIIENAKQDVDDEYG--VSQA--LARGLQSYYAVAHAVTERVDKQSALMVNG 752
+ ++ R + EN++ V E+G V Q+ L + V E V ++ +G
Sbjct: 2563 PLKDL-CRFLKENSEYGVAPEWGDVVKQSGFLPESMYERILTGPVVREEVSRRGRRPKSG 2621
Query: 753 VLKQYQIKGLEWLVSLYNNNL--NGIL 777
+ K S+ N L NG+L
Sbjct: 2622 IAKATAAAAAASATSVSGNPLLANGLL 2648
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 353 bits (906), Expect = 8e-97
Identities = 270/773 (34%), Positives = 385/773 (49%), Gaps = 64/773 (8%)
Query: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
L+ YQ++G+ WL ++ IL DEMGLGKT QTIAL YL GPFLI+ PLS
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLS 105
Query: 814 TLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQLRS-GKFNVLLTTYEYIIKDKHILAK 872
LSNW E ++AP + V+Y G R L+ +F+VLLTTYE +KD L
Sbjct: 106 VLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEICLKDASFLKS 165
Query: 873 IRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTI 932
W ++VDE HR+KN L + L+ V LLLTGTP+QN L EL++LL+F+ P +
Sbjct: 166 FPWSVLVVDEAHRLKNQSSLLHKTLSEFSVV-FSLLLTGTPIQNSLQELYSLLSFVEPDL 224
Query: 933 FKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKV 992
F + F + ++ E LHK+L+PFLLRR+K EV +LP+K
Sbjct: 225 FSKEEVGD------FIQRYQDIEKESESA----SELHKLLQPFLLRRVKAEVATELPKKT 274
Query: 993 EYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1052
E VI MSALQ+ Y+ + K + + +E KK K L N + QLRK +HPY+F
Sbjct: 275 EVVIYHGMSALQKKYYKAILMKDLDAFE-NETAKKVK-----LQNILSQLRKCVDHPYLF 328
Query: 1053 QHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIM 1112
+E E G L ASGK LLD++L L + H+VLLF QMT ++ I+
Sbjct: 329 DGVEPEPFE---------VGDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDIL 379
Query: 1113 EDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVI 1172
+DY YRG+ Y R+DG+ + E+R + +K F + F+FLLSTRAGG+G+NL +ADTVI
Sbjct: 380 QDYMDYRGYSYERVDGSVRGEERHLAIKNFGQ--QPIFVFLLSTRAGGVGMNLTAADTVI 437
Query: 1173 IFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG 1232
DSD+NP DLQA RAHRIGQ V+V+RL ++VEE + A KL + +I+ G
Sbjct: 438 FVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGG 497
Query: 1233 MFDQKSSSHERRAFLQAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEE--PPL 1290
F + A LQ + + S GS DLE
Sbjct: 498 HFTLGAQKPAADADLQLSEILKFGLDKLLASEGSTMDEI------------DLESILGET 545
Query: 1291 KEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEED--ELPSWII 1348
K+ V D + +R +EE M L ++ ++ P ++ R E L ++
Sbjct: 546 KDGQWVSDALPAAEGGSRDQEEGK--NHMYLFEGKDYSKEPSKEDRKSFEQLVNLQKTLL 603
Query: 1349 KDDAEVERLTCEEEEEKMFG--RGSRHRKEVDYSDSLTEKQWLKAIEEGTLEE---IEEE 1403
+ ++ R + + G GS RK V + L ++Q K +E + IEE+
Sbjct: 604 EKASQEGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQ--KKRQEAAAKRRRLIEEK 661
Query: 1404 VRQKKSSRKRKR----DSDAGSSTPTTSTRSRDKD----DESKKQKKRGRPPAEKLSPNP 1455
RQK+ + +K+ +S+ S S S +D +ES + P A L
Sbjct: 662 KRQKEEAEHKKKMAWWESNNYQSFCLPSEESEPEDLENGEESSAELDYQDPDATSLKYVS 721
Query: 1456 PNLTKKMKKIVDAVIKYKDSSSGR-QLSEVFIQLPSRKELP-EYYELIRKPVD 1506
++T DA+I + SG +F L R P + YEL K D
Sbjct: 722 GDVTHPQAGAEDALIVHCVDDSGHWGRGGLFTALEKRSAEPRKIYELAGKMKD 774
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 306 bits (784), Expect = 1e-82
Identities = 274/941 (29%), Positives = 426/941 (45%), Gaps = 118/941 (12%)
Query: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
Query: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
Query: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
Query: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
Query: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
Query: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
E+ P +E S+ +G E+ + K + + E
Sbjct: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
Query: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
Query: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
Query: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
Query: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Query: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
Query: 996 IKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM---- 1051
C MS Q LY + + + EK+ + + N +MQLRK+ NHP +
Sbjct: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLEKNTE-------MCNVMMQLRKMANHPLLHRQY 791
Query: 1052 ---------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDLYR 1077
F+ +E F H+ +DL
Sbjct: 792 YTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLIL 851
Query: 1078 ASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGM 1137
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 852 DSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIH 911
Query: 1138 LLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQN 1197
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 912 LIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTK 970
Query: 1198 EVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 971 EVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1011
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 305 bits (780), Expect = 3e-82
Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%)
Query: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
Query: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
Query: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
Query: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
Query: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
Query: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
E+ P +E S+ +G E+ + K + + E
Sbjct: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
Query: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
Query: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
Query: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
Query: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Query: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
Query: 996 IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051
C MS Q LY + + K + +EK+ + + N +MQLRK+ NHP +
Sbjct: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791
Query: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075
F+ +E F H+ +DL
Sbjct: 792 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851
Query: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
Query: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 912 IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
Query: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 305 bits (780), Expect = 3e-82
Identities = 275/943 (29%), Positives = 428/943 (45%), Gaps = 120/943 (12%)
Query: 362 DPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVV 421
+P E + + AR I ELE+L S DL+ LK L L + +
Sbjct: 125 EPSEDEESQGLPTMARRNDDISELEDL--SELEDLKDAKLQTLKELFPQRSDNDLLKLIE 182
Query: 422 VCMRRDTALETAL-----NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL 476
D A+ AL ++ K S E ++ Q I +K R H E
Sbjct: 183 STSTMDGAIAAALLMFGDAGGGPRKRKLSSSSEPYEEDEFNDDQSI---KKTRLDHGEES 239
Query: 477 NSILQHAKDFKEYHRSVTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEE 536
N + + ++++ V KL K + RE KE+E + E + L E+
Sbjct: 240 NESAESSSNWEKQESIVL----KLQKEFPNFDKQELREVLKEHEWMYTEALESLKVFAED 295
Query: 537 GYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAEN----A 592
+ + Q + + ++ Y N T+ + K + A+ KK+KK N
Sbjct: 296 QDMQYVSQSEVPNGKEVSSRSQNYPKNATKTKLKQKFSMKAQNGFNKKRKKNVFNPKRVV 355
Query: 593 EGQTPAIGPD-GEPLDETSQMSDLPV------KVIH-VESGKILTGTDAPKAGQLEAW-- 642
E G D G LDE + + K++H ++ I T P+ Q +A
Sbjct: 356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKI 415
Query: 643 LEMNP--GYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSE 700
E+ P +E S+ +G E+ + K + + E
Sbjct: 416 TELRPFNSWEALFTKMSKTNGLSEDL-----------------IWHCKTL-------IQE 451
Query: 701 VDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIK 760
D + N +D+ ++ + G + +++ S L + LK YQ
Sbjct: 452 RDVVIRLMNKCEDISNKLTKQVTMLTGNGGGW--------NIEQPSILNQSLSLKPYQKV 503
Query: 761 GLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAY 820
GL WL ++ + LNGILADEMGLGKTIQ IA + YL + NGP LI+VP ST+ NW
Sbjct: 504 GLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPASTIDNWLR 562
Query: 821 EFDKWAPSVVKVSYKGSPAARR--AFVPQLRSGKFNVLLTTYEYIIK---DKHILAKIRW 875
E + W P++ + Y GS R+ F R +NV++TTY I D+ + +++
Sbjct: 563 EVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRRLKL 622
Query: 876 KYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKS 935
Y I DEGH +KN Q L T A RLLLTGTP+QN L EL +LLNF++P +F S
Sbjct: 623 NYAIFDEGHMLKNMGSIRYQHLMT-INANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSS 681
Query: 936 CSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYV 995
++ + + + ++ + E+E I ++++PF+LRR+K+EV QLP K + +
Sbjct: 682 STSEIRRMFSSKTKSADEQSIYEKER---IAHAKQIIKPFILRRVKEEVLKQLPPKKDRI 738
Query: 996 IKCDMSALQRVLYRHM--QAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYM-- 1051
C MS Q LY + + K + +EK+ + + N +MQLRK+ NHP +
Sbjct: 739 ELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTE-------MCNVMMQLRKMANHPLLHR 791
Query: 1052 -----------------------------FQHIE--ESFSEHL-----GFTGGIVQGLDL 1075
F+ +E F H+ +DL
Sbjct: 792 QYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDL 851
Query: 1076 YRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR 1135
SGKF +L IL +L+ +V+LF Q T ++ I+E + +YLRLDG T+ +R
Sbjct: 852 ILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER 911
Query: 1136 GMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQ 1195
L+ FN + F+FLLST+AGGLG+NL SA+ VI+ D D NP+ D QA+DR HR+GQ
Sbjct: 912 IHLIDEFN-TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
Query: 1196 QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKS 1238
EV V++L + ++EE +L + KL ++Q + D+ S
Sbjct: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDEGS 1013
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 274 bits (700), Expect = 6e-73
Identities = 167/456 (36%), Positives = 254/456 (55%), Gaps = 57/456 (12%)
Query: 631 TDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKI 690
+D G +EA E P + + +SDS E SE+EE+E EE+ + + EE +
Sbjct: 475 SDCEPEGPVEA--EEPPQEDSSSQSDSVEDRSEDEEDEHSEEEETSGSSAS---EESESE 529
Query: 691 PDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYAVAHA------------- 737
D+ S+ D +++ DD++GV LAR + A A +
Sbjct: 530 ESEDAQSQSQAD--------EEEEDDDFGVEYLLARDEEQSEADAGSGPPTPGPTTLGPK 581
Query: 738 --------------------VTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGIL 777
T +V L++ G L++YQ GL+WLV++Y LNGIL
Sbjct: 582 KEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQLREYQHIGLDWLVTMYEKKLNGIL 641
Query: 778 ADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGS 837
ADEMGLGKTIQTI+L+ +L K GP LIIVP S + NW E +W PS ++Y G+
Sbjct: 642 ADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGA 701
Query: 838 PAARR-AFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQV 896
R+ + F+V +T+Y+ +++D + W+Y+I+DE +KN + Q
Sbjct: 702 QKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQS 761
Query: 897 LNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL 956
L ++ + RRLLLTGTPLQN L ELW+L++FL+P +F+S F++WF+ P +TG ++
Sbjct: 762 L-LNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNP--LTG-MIEG 817
Query: 957 NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
++E +++RLHKVLRPFLLRR+K +VE Q+P+K E+VI+C +S QR LY A+
Sbjct: 818 SQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQ-- 875
Query: 1017 LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMF 1052
+ K+ G +++N +MQLRK+CNHP +F
Sbjct: 876 ----TTTKETLATGHFMSVINILMQLRKVCNHPNLF 907
Score = 153 bits (387), Expect = 1e-36
Identities = 107/342 (31%), Positives = 175/342 (51%), Gaps = 49/342 (14%)
Query: 1080 GKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLL 1139
GK + L +L +L+A H+VL+F QMT ++ ++E + Y G YLRLDG+T+ E R L+
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALM 2102
Query: 1140 KTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEV 1199
+ FN F F+LSTR+GG+G+NL ADTV+ +DSDWNP D QAQDR HRIGQ +V
Sbjct: 2103 ERFNAD-KRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDV 2161
Query: 1200 RVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDES 1259
+ RL + +VEE IL A K + I+ G F ++++ ++ ++ + + ++ S
Sbjct: 2162 HIYRLISERTVEENILKKANQKRMLGDMAIEGGNF---TTAYFKQQTIRELFDMPLEEPS 2218
Query: 1260 RHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDET--VNQMIARHEEEFDLFM 1317
+ + P +EE+ V +T + Q + R E+E D+
Sbjct: 2219 ----------------------SSSVPSAPEEEEETVASKQTHILEQALCRAEDEEDI-- 2254
Query: 1318 RMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEV 1377
R ++ L E +E + + E R E+EE SR +E+
Sbjct: 2255 ------RAATQAKAEQVAELAEFNENDGFPAGEGEEAGRPGAEDEEM------SRAEQEI 2302
Query: 1378 -DYSDSLT--EKQWLK----AIEEGTLEEIEEEVRQKKSSRK 1412
+ LT E+ +K ++EE + EE+++ Q +++RK
Sbjct: 2303 AALVEQLTPIERYAMKFLEASLEEVSREELKQAEEQVEAARK 2344
Score = 60.1 bits (144), Expect = 2e-08
Identities = 97/373 (26%), Positives = 124/373 (33%), Gaps = 55/373 (14%)
Query: 3 TPDPPLGGTPRPGPSPGP---GPSPGAMLGPSPGPSPGSAHSMMGPSPGPP--------- 50
TP PPL PRP S P P P G P P+ G+A + P P P
Sbjct: 1322 TPVPPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTARA---PMPTPTLVRPLLKLV 1378
Query: 51 -SAGHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPP 109
S + PG P +H P S+ S P N P
Sbjct: 1379 HSPSPEVSASAPGAAPLTISSPLHVP-SSLPGPASSPMPIPNS--------------SPL 1423
Query: 110 PSPMDQH-SQGYPSPLGGSEHASSPVPASG----PSSGPQMSSGPGGA-------PLDGA 157
SP+ S S L S + P PAS P S P S G A PL
Sbjct: 1424 ASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPV 1483
Query: 158 DPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQM 217
P A G + P+ + + L + L+ Q P H + +PG+ +
Sbjct: 1484 VPAAPGPPSLAPSGASPS-ASALTLGLATAPSLSSSQ-TPGHPLLLAPTSSHVPGLNSTV 1541
Query: 218 -----PTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGM 272
P L P S A+ P P P AP + S + P P P
Sbjct: 1542 APACSPVLVPASALASPFPSAPNPAPAQASLLAPAS-SASQALATPLAPMAAPQTAILAP 1600
Query: 273 PGQPPGGP-PKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMPP--- 328
PP P P P A A + TP ++ P T S A + PA +PV+ P
Sbjct: 1601 SPAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSST 1660
Query: 329 QTQSPGQPAQPAP 341
QT P P P
Sbjct: 1661 QTMLPAPVPSPLP 1673
Score = 58.5 bits (140), Expect = 5e-08
Identities = 94/408 (23%), Positives = 135/408 (33%), Gaps = 64/408 (15%)
Query: 7 PLGGTPRPGPS-PGPGPSPGAMLGPSPGPSPGSAH----------SMMGPSPGPPSAGHP 55
P P PS P P P+ ++L P+ S A +++ PSP PP A P
Sbjct: 1551 PASALASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLP 1610
Query: 56 IPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQ 115
+ PG P Q P+ + + G + S A P P+P+
Sbjct: 1611 VLAPSPGAAPVLASSQTPVPVMAP-----------SSTPGTSLAS---ASPVPAPTPVLA 1656
Query: 116 HSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAP-LDGADPQ---ALGQQN-RGPT 170
PS A P P P+S ++ P AP L G+ P +LG N +GP
Sbjct: 1657 -----PSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPF 1711
Query: 171 PFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGP 230
P Q ++ + P P G P L P + P
Sbjct: 1712 P----------TQTLSLTPASSLVPTPAQTLSLAPG-----------PPLGPTQTLSLAP 1750
Query: 231 GPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMA 290
P P GP PA P + P + P GP +A
Sbjct: 1751 APPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVPTLGPA---AAQTLA 1807
Query: 291 NAAAPTSTPQKLIPPQPTGRPSPAP-PAVPPAASPVMPPQ----TQSPGQPAQPAPMVPL 345
A A T +P AP P + PV + T G P+ P+
Sbjct: 1808 LAPASTQSPASQASSLVVSASGAAPLPVTMVSRLPVSKDEPDTLTLRSGPPSPPSTATSF 1867
Query: 346 HQKQSRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLA 393
+ R P PR ++ L+E+ R ++ RI +L G+LA
Sbjct: 1868 GGPRPRRQPPPPPRSPFYLDSLEEKRKRQRSERLERIFQLSEAHGALA 1915
Score = 56.6 bits (135), Expect = 2e-07
Identities = 84/360 (23%), Positives = 127/360 (35%), Gaps = 30/360 (8%)
Query: 28 LGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGYPQ--DNMHQMHKPMESMHEKGMS 85
+ P+PGP+P S PS P G +P P +N + + G++
Sbjct: 1263 VAPTPGPTPVSVLPSSTPSTTPAPTGLSLPLAANQVPPTMVNNTGVVKIVVRQAPRDGLT 1322
Query: 86 DDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGP------ 139
P SG A + P P+ P+P G+ A P P
Sbjct: 1323 PVPPLAPAP-RPPSSGLPAVLNPRPTLTPGR---LPTPTLGTARAPMPTPTLVRPLLKLV 1378
Query: 140 -SSGPQMS-SGPGGAPLDGADPQALGQQNRGP--TPFNQNQLHQLRAQIMAYKMLARGQP 195
S P++S S PG APL + P + GP +P L + + + + P
Sbjct: 1379 HSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSV----P 1434
Query: 196 LPDHLQMAVQGKRPMPGMQQ-QMPTLPPPSVSATGPGPGPGPGPGPGP----GPAPPNYS 250
L L ++V P P +P P +VSA+GP P P P PP+ +
Sbjct: 1435 LSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLA 1494
Query: 251 RPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEG---PMANAAAPTSTPQKLIPPQP 307
+ G + P Q PG P P P N+ + L+P
Sbjct: 1495 PSGASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASA 1554
Query: 308 TGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPVEIL 367
P P+ P PA + ++ P S A P+ P+ Q+ I L P+ +L
Sbjct: 1555 LASPFPSAPNPAPAQASLLAP--ASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVL 1612
Score = 55.5 bits (132), Expect = 4e-07
Identities = 40/128 (31%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 217 MPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNM----PPPGPSGVPPGM 272
+P PPP GP P PGP P P + GP + PPGP +PP
Sbjct: 1022 VPVRPPP-----GPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRPPGPVLLPPLQ 1076
Query: 273 PGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVMPPQTQS 332
P P P G ++ + P + L P P P PA PP +S ++ P T
Sbjct: 1077 PNSGSLPQVLPSPLGVLSGTSRPPTPTLSLKPTPPA--PVRLSPAPPPGSSSLLKPLTVP 1134
Query: 333 PGQPAQPA 340
PG PA
Sbjct: 1135 PGYTFPPA 1142
Score = 52.4 bits (124), Expect = 4e-06
Identities = 106/413 (25%), Positives = 135/413 (32%), Gaps = 65/413 (15%)
Query: 1 MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSP-GP---PSAGHPI 56
++ P PLG P P PGP A P P P A M+ SP GP P++ P
Sbjct: 1012 VNNPRAPLGPVP---VRPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRPPG 1068
Query: 57 PTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMD-- 114
P P P P G S P + PPP
Sbjct: 1069 PVLLPPLQPNSGSLPQVLPSPLGVLSGTSRPPTPTLSLKPTPPAPVRLSPAPPPGSSSLL 1128
Query: 115 ---QHSQGYPSPLGGSEHAS--------SPVPASGPSSGPQMSSGPGGAPLDGADPQALG 163
GY P + S + VPA P+ + S A L + ++G
Sbjct: 1129 KPLTVPPGYTFPPAAATTTSTTTATATTTAVPAPTPAPQRLILSPDMQARLPSGEVVSIG 1188
Query: 164 Q-QNRGPTPF-NQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPM---------PG 212
Q + P N L QI K+ G + Q+AV RP+ G
Sbjct: 1189 QLASLAQRPVANAGGSKPLTFQIQGNKLTLTGAQV---RQLAVGQPRPLQRNVVHLVSAG 1245
Query: 213 MQQQMPTLPP--PSVSATGPGPGPG-----PGPGPGPGPAPPNYSRPHGMGGPNMPPP-- 263
Q + + P + A P PGP P P PAP S P + +PP
Sbjct: 1246 GQHHLISQPAHVALIQAVAPTPGPTPVSVLPSSTPSTTPAPTGLSLP--LAANQVPPTMV 1303
Query: 264 GPSGV---------PPGMPGQPPGGP-PKPWPEG-PMANAAAPTSTPQKLIPPQPT---- 308
+GV G+ PP P P+P G P PT TP +L P PT
Sbjct: 1304 NNTGVVKIVVRQAPRDGLTPVPPLAPAPRPPSSGLPAVLNPRPTLTPGRL--PTPTLGTA 1361
Query: 309 GRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMV---PLHQKQSRITPIQKP 358
P P P V P V P + AP+ PLH S P P
Sbjct: 1362 RAPMPTPTLVRPLLKLVHSPSPEVSASAPGAAPLTISSPLHVPSSLPGPASSP 1414
Score = 48.9 bits (115), Expect = 4e-05
Identities = 93/408 (22%), Positives = 125/408 (30%), Gaps = 76/408 (18%)
Query: 3 TPDPPLGGTPRPGPSPGPGP------SPGAMLGPS--PGPSPGSAHSMMGPSP--GPPSA 52
+P PPL P PSPG P +P ++ PS PG S SA + P+P P S
Sbjct: 1601 SPAPPLAPLPVLAPSPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSST 1660
Query: 53 GHPIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGH----AGMGP 108
+P P P Q ++ P G G G + P
Sbjct: 1661 QTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLTP 1720
Query: 109 P----PSPMDQHSQGYPSPLGGSEHAS-------SPVPASGPSSGPQMSSGPGGAPLDGA 157
P+P S PLG ++ S +P GP+ ++ P +
Sbjct: 1721 ASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLL 1780
Query: 158 DPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPL--PDHLQMAVQGKRPMP-GMQ 214
P ++ P P L AQ +A + P L ++ G P+P M
Sbjct: 1781 APASVQTLTLSPAPV--PTLGPAAAQTLALAPASTQSPASQASSLVVSASGAAPLPVTMV 1838
Query: 215 QQMPTL-------------PPPSVSATGPGPGPGPGPGPGPGPAPPNY------------ 249
++P P P +AT G GP P P P P P Y
Sbjct: 1839 SRLPVSKDEPDTLTLRSGPPSPPSTATSFG-GPRPRRQPPPPPRSPFYLDSLEEKRKRQR 1897
Query: 250 ----------SRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTP 299
S HG P P P GP P P P +
Sbjct: 1898 SERLERIFQLSEAHGALAPVYGTEVLDFCTLPQPVASPIGPRSPGPSHPTFWTYTEAAHR 1957
Query: 300 QKLIPPQPTGRPS----------PAPPAVPPAASPVMPPQTQSPGQPA 337
L P Q + S P A PP+ PP +P Q A
Sbjct: 1958 AVLFPQQRLDQLSEIIERFIFVMPPVEAPPPSLHACHPPPWLAPRQAA 2005
Score = 47.8 bits (112), Expect = 9e-05
Identities = 63/234 (26%), Positives = 84/234 (35%), Gaps = 45/234 (19%)
Query: 125 GGSEHASSP-VPASGPSSGPQMSSGPGGAPLDGADPQALGQQNRGPTPFNQNQLHQLRAQ 183
G SE ++SP P+ SGP+ SS P G P + A +L PTP Q
Sbjct: 2780 GVSETSASPGSPSVRSMSGPE-SSPPIGGPCEAAPSSSL------PTPPQQ--------- 2823
Query: 184 IMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSAT-GPGPGPGPGP---G 239
+AR H+++ V G + + PP+V G P P G
Sbjct: 2824 ----PFIARR-----HIELGVTGGGSPENGDGALLAITPPAVKRRRGRPPKKNRSPADAG 2874
Query: 240 PGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTP 299
G AP + + G P PGP + P P P P P GP P P
Sbjct: 2875 RGVDEAPSSTLKGKTNGAD--PVPGPETLIVADPVLEPQLIPGPQPLGPQ-----PVHRP 2927
Query: 300 QKLIPP--------QPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPL 345
L+ P P R P P + A +TQ P P+ P+ PL
Sbjct: 2928 NPLLSPVEKRRRGRPPKARDLPIPGTISSAGDGNSESRTQPPPHPSPLTPLPPL 2981
Score = 46.2 bits (108), Expect = 3e-04
Identities = 86/345 (24%), Positives = 122/345 (35%), Gaps = 56/345 (16%)
Query: 31 SPGPSPGSAHSMMGPSPGPP-----SAGHPIPTQGPG--GYPQDNMHQMHKP---MESMH 80
+P S + S GPSP P SA I QG G G P P + +
Sbjct: 2700 APSTSSSATSSPEGPSPARPPRRRTSADVEIRGQGTGRPGQPPGPKVLRKLPGRLVTVVE 2759
Query: 81 EKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGYPS--PLGG----SEHASSPV 134
EK + R + + G P SP + G S P+GG + +S P
Sbjct: 2760 EKELVRRRRQQRGAASTLVPGVSETSASPGSPSVRSMSGPESSPPIGGPCEAAPSSSLPT 2819
Query: 135 PASGPSSGP---QMSSGPGGAPLDG------ADPQALGQQNRGPTPFNQNQLHQLRAQIM 185
P P ++ GG+P +G P A+ ++ P N++ R
Sbjct: 2820 PPQQPFIARRHIELGVTGGGSPENGDGALLAITPPAVKRRRGRPPKKNRSPADAGRGVDE 2879
Query: 186 AYKMLARGQPLPDHLQMAVQGKRPMPGMQQQM---PTLPPPSVSATGPGPGP-GPGPGPG 241
A +G+ G P+PG + + P L P + PGP P GP P
Sbjct: 2880 APSSTLKGK---------TNGADPVPGPETLIVADPVLEPQLI----PGPQPLGPQPVHR 2926
Query: 242 PGPA-PPNYSRPHGMG--GPNMPPPGP-SGVPPGMPGQPPGGPPKPWPEGPMANA-AAPT 296
P P P R G ++P PG S G PP P P P+ PT
Sbjct: 2927 PNPLLSPVEKRRRGRPPKARDLPIPGTISSAGDGNSESRTQPPPHPSPLTPLPPLLVCPT 2986
Query: 297 STPQKLI---------PPQPTGRPSPAPPAVPPAASPVMPPQTQS 332
+T + P + GRP PP+ P+ PV+ + S
Sbjct: 2987 ATVANTVTTVTISTSPPKRKRGRPPKNPPSPRPSQLPVLDRDSTS 3031
Score = 43.1 bits (100), Expect = 0.002
Identities = 113/526 (21%), Positives = 189/526 (35%), Gaps = 110/526 (20%)
Query: 258 PNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSP--AP 315
P +P V GM G P P A++++P S+ I PQ + S P
Sbjct: 10 PQLPVLQTQMVSDGMTGSNPVSP---------ASSSSPASSGAGGISPQHIAQDSSLDGP 60
Query: 316 PAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPVEILQEREYRLQ 375
P P A+ +P + S Q A A P +K EI ++ ++ +
Sbjct: 61 PGPPDGAT--VPLEGFSLSQAADLANKGPKWEKSH-------------AEIAEQAKH--E 103
Query: 376 ARIAHRIQELENLPGSLAGDLRTKATIELKAL-RLLNFQRQLRQEVVVCMRRDTALETAL 434
A I RI EL R + LK L ++ R +C
Sbjct: 104 AEIETRIAEL-----------RKEGFWSLKRLPKVPEPPRPKGHWDYLCEEMQWLSADFA 152
Query: 435 NAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVT 494
+ +KR + + R+ + ++Q+ ++ER RR++ + AKD +++ +V
Sbjct: 153 QERRWKRGVARKV--VRMVIRHHEEQRQKEERARREEQAKLRRIASTMAKDVRQFWSNVE 210
Query: 495 GKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLL 554
+ Q K+ R+E++R + L D L +++
Sbjct: 211 KVV-----------------QFKQQSRLEEKRKKAL----------------DLHLDFIV 237
Query: 555 QQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSD 614
QT++Y L++ + Q + A A + PA D E D Q +
Sbjct: 238 GQTEKYSDLLSQSLNQPLTSSKAGSSPCLGSSSAASSP--PPPASRLDDEDGDFQPQEDE 295
Query: 615 LPVKVIHVESGKILTGTDAP----------KAGQL---EAWLEMNPGYEVAPRSDSEESG 661
+E + G DA + G+L E + P P S S+
Sbjct: 296 EEDDEETIEVEEQQEGNDAEAQRREIELLRREGELPLEELLRSLPPQLLEGPSSPSQTPS 355
Query: 662 SEEE------EEEEEEEQPQAAQ--PPTLPVEEKKKIP-DPDSDDVSEVDARHIIENAKQ 712
S + EE EEE PQ + PP V ++ K P PD DD N ++
Sbjct: 356 SHDSDTRDGPEEGAEEEPPQVLEIKPPPSAVTQRNKQPWHPDEDD------EEFTANEEE 409
Query: 713 DVDDEYGVSQALARGLQSYYAVAHAV-TERVDKQSALMVNGVLKQY 757
D+E +A Q V HA+ + ++ L + +L+QY
Sbjct: 410 AEDEE----DTIAAEEQLEGEVDHAMELSELAREGELSMEELLQQY 451
Score = 42.4 bits (98), Expect = 0.004
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 214 QQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMP 273
Q + T PP A P P P P P P AP + P + P + P P P +
Sbjct: 2419 QTRSTTTPPRCSPARERVPRPAPRPRPTPASAPA--AIPALVPVP-VSAPVPISAPNPIT 2475
Query: 274 GQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPVM--PP 328
P P P P + ++P TP P P P PA + +SP++ PP
Sbjct: 2476 ILPVHILPSPPPPSQIPPCSSPACTPPPACTPPPAHTPPPAQTCLVTPSSPLLLGPP 2532
Score = 40.8 bits (94), Expect = 0.011
Identities = 38/143 (26%), Positives = 52/143 (36%), Gaps = 14/143 (9%)
Query: 223 PSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPK 282
P GPG G G G G + R P P S G + G
Sbjct: 2357 PQEEEEGPGAGDESSCGTGGG----THRRSKKAKAPERPGTRVSERLRGARAETQGANHT 2412
Query: 283 PWPEGPMANAAAPTSTPQKLIP-----PQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPA 337
P A+ T+TP + P P+P RP P P + P A ++P +P +
Sbjct: 2413 PVIS---AHQTRSTTTPPRCSPARERVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPIS 2469
Query: 338 QPAP--MVPLHQKQSRITPIQKP 358
P P ++P+H S P Q P
Sbjct: 2470 APNPITILPVHILPSPPPPSQIP 2492
Score = 38.1 bits (87), Expect = 0.071
Identities = 86/363 (23%), Positives = 121/363 (33%), Gaps = 48/363 (13%)
Query: 4 PDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSP---GPPSAGHPIPTQG 60
P PP P SP P P P+ P P + SP GPPS
Sbjct: 2483 PSPPPPSQIPPCSSPACTPPPACTPPPAHTPPPAQTCLVTPSSPLLLGPPSV-------- 2534
Query: 61 PGGYPQDNMHQMHKPMESMHEKGMSDDPRYNQMKGMGMRSGGHAGMGPPPSPMDQHSQGY 120
P N+ +P + + ++ P ++ + + PP + +
Sbjct: 2535 PISASVTNLPLGLRPEAELCAQALAS-PESLELASVASSETSSLSLVPPKDLLPVAVEIL 2593
Query: 121 PSPLGGSEHASSPVPASGPSSGPQMSSGPGG----APLDGADPQALGQQNRGPT-PFNQN 175
P SE S P S PS + S P G AP D A+ L G P +
Sbjct: 2594 PV----SEKNLSLTP-SAPSLTLEAGSIPNGQEQEAP-DSAEGTTLTVLPEGEELPLCVS 2647
Query: 176 QLHQLRAQIMAYKMLARGQPLPDHLQM------AVQGKRPM--PGMQQQMPTL----PPP 223
+ + L A A +PL + L+ + K P P Q++ T P
Sbjct: 2648 ESNGLELPPSA----ASDEPLQEPLEADRTSEELTEAKTPTSSPEKPQELVTAEVAAPST 2703
Query: 224 SVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPG------QPP 277
S SAT GP P P + R G G P PPGP V +PG +
Sbjct: 2704 SSSATSSPEGPSPARPPRRRTSADVEIRGQGTGRPGQ-PPGPK-VLRKLPGRLVTVVEEK 2761
Query: 278 GGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAASPV-MPPQTQSPGQP 336
+ + A+ P + P P+ R P + PP P P + P P
Sbjct: 2762 ELVRRRRQQRGAASTLVPGVSETSASPGSPSVRSMSGPESSPPIGGPCEAAPSSSLPTPP 2821
Query: 337 AQP 339
QP
Sbjct: 2822 QQP 2824
Score = 37.7 bits (86), Expect = 0.093
Identities = 47/183 (25%), Positives = 61/183 (33%), Gaps = 22/183 (12%)
Query: 194 QPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPH 253
QP P + + P M P PP ++ PGP P P G P P
Sbjct: 1035 QPTPGPVPQVL----PASLMVSASPAGPPLIPASRPPGPVLLPPLQPNSGSLPQVLPSPL 1090
Query: 254 GMGGPNMPPPGPS----GVPPG----MPGQPPGG----PPKPWPEGPMANAAAPTSTPQK 301
G+ PP P+ PP P PPG P P G AA T+T
Sbjct: 1091 GVLSGTSRPPTPTLSLKPTPPAPVRLSPAPPPGSSSLLKPLTVPPGYTFPPAAATTTSTT 1150
Query: 302 LIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGL 361
T P+P P SP M + S G+ + L Q+ P+ G
Sbjct: 1151 TATATTTAVPAPTPAPQRLILSPDMQARLPS-GEVVSIGQLASLAQR-----PVANAGGS 1204
Query: 362 DPV 364
P+
Sbjct: 1205 KPL 1207
Score = 36.6 bits (83), Expect = 0.21
Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 9/137 (6%)
Query: 236 PGPGPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAP 295
P P P P P +R M P G + V P P G P P GP +A
Sbjct: 981 PDPPPRPKPVKMKVNR---MLQPVPKQEGRTVVVVNNPRAPLGPVPVRPPPGPELSAQPT 1037
Query: 296 TSTPQKLIPPQPTGRPSPAPPAVPPAASP----VMPPQTQSPGQPAQ--PAPMVPLHQKQ 349
+++P SPA P + PA+ P ++PP + G Q P+P+ L
Sbjct: 1038 PGPVPQVLPASLMVSASPAGPPLIPASRPPGPVLLPPLQPNSGSLPQVLPSPLGVLSGTS 1097
Query: 350 SRITPIQKPRGLDPVEI 366
TP + P +
Sbjct: 1098 RPPTPTLSLKPTPPAPV 1114
Score = 34.3 bits (77), Expect = 1.0
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 1267 GSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRRE 1326
GS+S A + PPPA D + +EDE DDE ++ + E R +++ R
Sbjct: 267 GSSSAASSPPPPASRLDDEDGDFQPQEDEEEDDEETIEVEEQQEGNDAEAQRREIELLRR 326
Query: 1327 EARNPKRK------PRLMEEDELPS 1345
E P + P+L+E PS
Sbjct: 327 EGELPLEELLRSLPPQLLEGPSSPS 351
>gi|38708321 INO80 complex homolog 1 [Homo sapiens]
Length = 1556
Score = 259 bits (662), Expect = 1e-68
Identities = 191/657 (29%), Positives = 326/657 (49%), Gaps = 77/657 (11%)
Query: 437 KAYKRSKRQSLREARITEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 492
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
Query: 493 VTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQ-KKDKRLA 551
+ Q + + + ++E K N+ +K R L + RKL Q K+ R A
Sbjct: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
Query: 552 YLLQQTD--EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDET 609
L Q + E + L ++ EK +K+ +K+AE + LDE
Sbjct: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKE-------ALEQRKLDEE 374
Query: 610 SQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEE---- 665
+ + + ++ ++T T+ + ++ + D G +EE
Sbjct: 375 MREAKRQQRKLNF----LITQTELY-------------AHFMSRKRDMGHDGIQEEILRK 417
Query: 666 -EEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV------SEVDARHIIENAKQDVDDEY 718
E+ + Q + + ++ D DS+ + +A HI + + D++
Sbjct: 418 LEDSSTQRQIDIGGGVVVNITQE----DYDSNHFKAQALKNAENAYHIHQARTRSFDEDA 473
Query: 719 GVSQALA--------RGLQSYYAVAH-AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLY 769
S+A A G Y++A+ ++ D + NG LK YQ+KG+ WL +LY
Sbjct: 474 KESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLY 533
Query: 770 NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSV 829
+NGILADEMGLGKT+Q+IAL+ +L E + I GPFLII P STL+NW EF ++ P
Sbjct: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKF 593
Query: 830 VKVSYKGSPAAR---RAFVPQ----LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
+ Y G+P R R F Q + F+V++T+Y+ +++D +++W+YM++DE
Sbjct: 594 KVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDE 653
Query: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
+K+ ++L + RLLLTGTP+QN + ELWALL+F++PT+F S F +W
Sbjct: 654 AQALKSSSSVRWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEW 712
Query: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
F+ E +E + RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++
Sbjct: 713 FSKDIESHAENKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTS 769
Query: 1003 LQRVLYRHMQAK---GVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Q++LY+ ++ K LL ++ + T +LMN +MQ RK+CNHP +F+ E
Sbjct: 770 RQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
Score = 155 bits (391), Expect = 4e-37
Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1138
SGK LD +L +L++ H+VL++ QMT ++ ++E+Y YR Y+RLDG++K +R +
Sbjct: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1159
Query: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
+ F ++ F+FLLSTRAGGLG+NL +ADTVI +DSDWNP D QA DRAHR+GQ +
Sbjct: 1160 VADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
Query: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
V V RL ++EE+IL AK K + + VI G F K + + + + +L+ EE ++
Sbjct: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLKPKEVVSLLLDDEELEK 1276
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.132 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,094,532
Number of Sequences: 37866
Number of extensions: 5747419
Number of successful extensions: 130082
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 2942
Number of HSP's that attempted gapping in prelim test: 38095
Number of HSP's gapped (non-prelim): 46488
length of query: 1647
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1531
effective length of database: 13,855,062
effective search space: 21212099922
effective search space used: 21212099922
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.