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Search of human proteins with 21071044
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
(1054 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 2110 0.0
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 2077 0.0
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 1720 0.0
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 462 e-130
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 462 e-130
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 462 e-130
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 462 e-130
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 461 e-129
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 461 e-129
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 461 e-129
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 453 e-127
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 440 e-123
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 440 e-123
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 438 e-122
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 435 e-121
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 435 e-121
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 435 e-121
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 432 e-121
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 426 e-119
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 419 e-117
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 399 e-110
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 398 e-110
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 395 e-109
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 394 e-109
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 313 4e-85
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 313 4e-85
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 313 5e-85
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 276 1e-73
gi|4557565 excision repair cross-complementing rodent repair def... 273 5e-73
gi|38708321 INO80 complex homolog 1 [Homo sapiens] 265 1e-70
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 2110 bits (5466), Expect = 0.0
Identities = 1054/1054 (100%), Positives = 1054/1054 (100%)
Query: 1 MEQDTAAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAATEATAATEKGEKKKEKN 60
MEQDTAAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAATEATAATEKGEKKKEKN
Sbjct: 1 MEQDTAAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAATEATAATEKGEKKKEKN 60
Query: 61 VSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSP 120
VSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSP
Sbjct: 61 VSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSP 120
Query: 121 LNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKG 180
LNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKG
Sbjct: 121 LNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKG 180
Query: 181 GPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVP 240
GPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVP
Sbjct: 181 GPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVP 240
Query: 241 KSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVF 300
KSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVF
Sbjct: 241 KSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVF 300
Query: 301 KKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPD 360
KKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPD
Sbjct: 301 KKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPD 360
Query: 361 VFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLS 420
VFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLS
Sbjct: 361 VFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLS 420
Query: 421 KMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEH 480
KMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEH
Sbjct: 421 KMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEH 480
Query: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE
Sbjct: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
Query: 541 REDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 600
REDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV
Sbjct: 541 REDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 600
Query: 601 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL 660
DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL
Sbjct: 601 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL 660
Query: 661 AKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGESSLRNFRM 720
AKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGESSLRNFRM
Sbjct: 661 AKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGESSLRNFRM 720
Query: 721 DIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRP 780
DIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRP
Sbjct: 721 DIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRP 780
Query: 781 PKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAEP 840
PKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAEP
Sbjct: 781 PKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAEP 840
Query: 841 LTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSA 900
LTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSA
Sbjct: 841 LTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSA 900
Query: 901 VFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGK 960
VFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGK
Sbjct: 901 VFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGK 960
Query: 961 NYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLI 1020
NYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLI
Sbjct: 961 NYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLI 1020
Query: 1021 SLIEKENMEIEERERAEKKKRATKTPMVKFSAFS 1054
SLIEKENMEIEERERAEKKKRATKTPMVKFSAFS
Sbjct: 1021 SLIEKENMEIEERERAEKKKRATKTPMVKFSAFS 1054
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 2077 bits (5382), Expect = 0.0
Identities = 1042/1054 (98%), Positives = 1042/1054 (98%), Gaps = 12/1054 (1%)
Query: 1 MEQDTAAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAATEATAATEKGEKKKEKN 60
MEQDTAAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAATEATAATEKGEKKKEKN
Sbjct: 1 MEQDTAAVAATVAAADATATIVVIEDEQPGPSTSQEEGAAAAATEATAATEKGEKKKEKN 60
Query: 61 VSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSP 120
VSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSP
Sbjct: 61 VSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSP 120
Query: 121 LNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKG 180
LNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKG
Sbjct: 121 LNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKG 180
Query: 181 GPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVP 240
GPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVP
Sbjct: 181 GPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVP 240
Query: 241 KSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVF 300
KSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVF
Sbjct: 241 KSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVF 300
Query: 301 KKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPD 360
KKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPD
Sbjct: 301 KKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPD 360
Query: 361 VFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLS 420
VFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLS
Sbjct: 361 VFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLS 420
Query: 421 KMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEH 480
KMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEH
Sbjct: 421 KMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEH 480
Query: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE
Sbjct: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
Query: 541 REDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 600
RE EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV
Sbjct: 541 RE------------EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 588
Query: 601 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL 660
DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL
Sbjct: 589 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKL 648
Query: 661 AKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGESSLRNFRM 720
AKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGESSLRNFRM
Sbjct: 649 AKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGESSLRNFRM 708
Query: 721 DIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRP 780
DIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRP
Sbjct: 709 DIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRP 768
Query: 781 PKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAEP 840
PKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAEP
Sbjct: 769 PKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAEP 828
Query: 841 LTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSA 900
LTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSA
Sbjct: 829 LTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDNIAREVEGKSPEEVMEYSA 888
Query: 901 VFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGK 960
VFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGK
Sbjct: 889 VFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLRIQYGTSKGK 948
Query: 961 NYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLI 1020
NYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLI
Sbjct: 949 NYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTAMEFQRRCNTLI 1008
Query: 1021 SLIEKENMEIEERERAEKKKRATKTPMVKFSAFS 1054
SLIEKENMEIEERERAEKKKRATKTPMVKFSAFS
Sbjct: 1009 SLIEKENMEIEERERAEKKKRATKTPMVKFSAFS 1042
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 1720 bits (4455), Expect = 0.0
Identities = 838/1015 (82%), Positives = 913/1015 (89%), Gaps = 13/1015 (1%)
Query: 30 GPSTSQEEGAAAAATEATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKA 89
G ++S + G A +A A+ + F K K +E DP YEEKM+
Sbjct: 28 GSNSSNKGGPEGVAAQAVASAVSAGPADAEMEEIFDDASPGKQ-KEIQEPDPTYEEKMQT 86
Query: 90 DRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRT 149
DRA RFE+LLKQTELFAHFIQP+AQK+PTSPL MK GRPRIKKDEKQ+L+S GDYRHRRT
Sbjct: 87 DRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQNLLSVGDYRHRRT 146
Query: 150 EQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADE 209
EQEEDEELL+ES K +NVC RFE SPSYVK G LRDYQ+RGLNWLISLYENG+NGILADE
Sbjct: 147 EQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADE 206
Query: 210 MGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDA 269
MGLGKTLQTI+LLGY+KHYRNIPGPHMVLVPKSTLHNWM+EFKRWVP+LR +C +GDK+
Sbjct: 207 MGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQ 266
Query: 270 RAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRE 329
RAAF+RD ++PGEWDVCVTSYEM+IKEKSVFKKF+WRYLVIDEAHRIKNEKSKLSEIVRE
Sbjct: 267 RAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE 326
Query: 330 FKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHA 389
FK+TNRLLLTGTPLQNNLHELW+LLNFLLPDVFNSADDFDSWFDT NCLGDQKLVERLH
Sbjct: 327 FKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHM 386
Query: 390 VLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRL 449
VL+PFLLRRIK DVEKSLPPKKE+KIY+GLSKMQREWYT+ILMKDID+LNS+GKMDKMRL
Sbjct: 387 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 446
Query: 450 LNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFS 509
LNILMQLRKCCNHPYLFDGAEPGPPYTTD H+V+NSGKMVVLDKLL KLKEQGSRVLIFS
Sbjct: 447 LNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFS 506
Query: 510 QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFI 569
QMTR+LDILEDYCMWR YEYCRLDGQTPH+ER+D +I A+N PNS+KF+
Sbjct: 507 QMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQD------------SINAYNEPNSTKFV 554
Query: 570 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 629
FMLSTRAGGLGINLA+ADVVILYDSDWNPQVDLQAMDRAHRIGQ K VRVFR ITDNTVE
Sbjct: 555 FMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 614
Query: 630 ERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDI 689
ERIVERAE+KLRLDSIVIQQGRL+DQ NK+ K+EMLQMIRHGATHVFASKESE+TDEDI
Sbjct: 615 ERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDEDI 674
Query: 690 TTILERGEKKTAEMNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPP 749
ILERG KKTAEMNE+L KMGESSLRNF MD E S+Y FEGEDYREKQK+ EWIEPP
Sbjct: 675 DGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKIAFTEWIEPP 734
Query: 750 KRERKANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRK 809
KRERKANYAVDAYFREALRVSEPK PKAPRPPKQPNVQDFQFFPPRLFELLEKEIL+YRK
Sbjct: 735 KRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRK 794
Query: 810 TIGYKVPRNPDIPNPALAQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFI 869
TIGYKVPRNP++PN A AQ+EEQ KID AE L EE EEKEKLLTQGFTNW KRDFNQFI
Sbjct: 795 TIGYKVPRNPELPNAAQAQKEEQLKIDEAESLNDEELEEKEKLLTQGFTNWNKRDFNQFI 854
Query: 870 KANEKYGRDDIDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRR 929
KANEK+GRDDI+NIAREVEGK+PEEV+EYSAVFWERCNELQDIEKIMAQIERGEARIQRR
Sbjct: 855 KANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRR 914
Query: 930 ISIKKALDAKIARYKAPFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELR 989
ISIKKALD KI RYKAPFHQLRI YGT+KGKNYTEEEDRFLICMLHK+GFD+ENVY+ELR
Sbjct: 915 ISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELR 974
Query: 990 QCVRNAPQFRFDWFIKSRTAMEFQRRCNTLISLIEKENMEIEERERAEKKKRATK 1044
QC+RN+PQFRFDWF+KSRTAME QRRCNTLI+LIE+ENME+EE+E+AEKKKR K
Sbjct: 975 QCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1029
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 462 bits (1188), Expect = e-130
Identities = 277/686 (40%), Positives = 390/686 (56%), Gaps = 73/686 (10%)
Query: 60 NVSSFQLKLAAKAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQ 114
+V S ++ APK+ + EM+P YE ++D + ++ E QP A
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS---EEEEEEEEEEQPQAA 677
Query: 115 KSPTSPLNMKLGRPRIKKDEKQSLISAGDYRH--RRTEQEEDEE----------LLSESR 162
+ PT P+ K P D+ +S D RH +Q+ D+E L S
Sbjct: 678 QPPTLPVEEKKKIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL 222
V R + + + G L+ YQI+GL WL+SLY N +NGILADEMGLGKT+QTIAL+
Sbjct: 734 VAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI 793
Query: 223 GYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
YL ++ I GP +++VP STL NW EF +W PS+ + + G AR AF+ ++ G+
Sbjct: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGK 852
Query: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGT 341
++V +T+YE +IK+K + K W+Y+++DE HR+KN KL++++ + + RLLLTGT
Sbjct: 853 FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 342 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVL 391
PLQN L ELWALLNFLLP +F S F+ WF+ + +K ++ RLH VL
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL 972
Query: 392 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDK 446
+PFLLRR+K +VE LP K E I +S +QR Y +L+ D + GK
Sbjct: 973 RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT 1032
Query: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI------------VSNSGKMVVLDKL 494
L+N +MQLRK CNHPY+F E + EH+ SGK +LD++
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRI 1088
Query: 495 LAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQR 554
L KL+ +VL+F QMT L+ I+EDY +RG++Y RLDG T E+R
Sbjct: 1089 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG------------ 1136
Query: 555 EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQK 614
++ FN P S FIF+LSTRAGGLG+NL SAD VI++DSDWNP DLQA DRAHRIGQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 615 KPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGAT 674
VRV RL T N+VEE+I+ A+ KL +D VIQ G + DQ+S+ + LQ I
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAILEHEE 1255
Query: 675 HVFASKESEL-TDEDITTILERGEKK 699
+E E+ DE + ++ R E++
Sbjct: 1256 Q--DEEEDEVPDDETVNQMIARHEEE 1279
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 462 bits (1188), Expect = e-130
Identities = 277/686 (40%), Positives = 390/686 (56%), Gaps = 73/686 (10%)
Query: 60 NVSSFQLKLAAKAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQ 114
+V S ++ APK+ + EM+P YE ++D + ++ E QP A
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS---EEEEEEEEEEQPQAA 677
Query: 115 KSPTSPLNMKLGRPRIKKDEKQSLISAGDYRH--RRTEQEEDEE----------LLSESR 162
+ PT P+ K P D+ +S D RH +Q+ D+E L S
Sbjct: 678 QPPTLPVEEKKKIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL 222
V R + + + G L+ YQI+GL WL+SLY N +NGILADEMGLGKT+QTIAL+
Sbjct: 734 VAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI 793
Query: 223 GYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
YL ++ I GP +++VP STL NW EF +W PS+ + + G AR AF+ ++ G+
Sbjct: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGK 852
Query: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGT 341
++V +T+YE +IK+K + K W+Y+++DE HR+KN KL++++ + + RLLLTGT
Sbjct: 853 FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 342 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVL 391
PLQN L ELWALLNFLLP +F S F+ WF+ + +K ++ RLH VL
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL 972
Query: 392 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDK 446
+PFLLRR+K +VE LP K E I +S +QR Y +L+ D + GK
Sbjct: 973 RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT 1032
Query: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI------------VSNSGKMVVLDKL 494
L+N +MQLRK CNHPY+F E + EH+ SGK +LD++
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRI 1088
Query: 495 LAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQR 554
L KL+ +VL+F QMT L+ I+EDY +RG++Y RLDG T E+R
Sbjct: 1089 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG------------ 1136
Query: 555 EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQK 614
++ FN P S FIF+LSTRAGGLG+NL SAD VI++DSDWNP DLQA DRAHRIGQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 615 KPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGAT 674
VRV RL T N+VEE+I+ A+ KL +D VIQ G + DQ+S+ + LQ I
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAILEHEE 1255
Query: 675 HVFASKESEL-TDEDITTILERGEKK 699
+E E+ DE + ++ R E++
Sbjct: 1256 Q--DEEEDEVPDDETVNQMIARHEEE 1279
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 462 bits (1188), Expect = e-130
Identities = 277/686 (40%), Positives = 390/686 (56%), Gaps = 73/686 (10%)
Query: 60 NVSSFQLKLAAKAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQ 114
+V S ++ APK+ + EM+P YE ++D + ++ E QP A
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS---EEEEEEEEEEQPQAA 677
Query: 115 KSPTSPLNMKLGRPRIKKDEKQSLISAGDYRH--RRTEQEEDEE----------LLSESR 162
+ PT P+ K P D+ +S D RH +Q+ D+E L S
Sbjct: 678 QPPTLPVEEKKKIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL 222
V R + + + G L+ YQI+GL WL+SLY N +NGILADEMGLGKT+QTIAL+
Sbjct: 734 VAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI 793
Query: 223 GYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
YL ++ I GP +++VP STL NW EF +W PS+ + + G AR AF+ ++ G+
Sbjct: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGK 852
Query: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGT 341
++V +T+YE +IK+K + K W+Y+++DE HR+KN KL++++ + + RLLLTGT
Sbjct: 853 FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 342 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVL 391
PLQN L ELWALLNFLLP +F S F+ WF+ + +K ++ RLH VL
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL 972
Query: 392 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDK 446
+PFLLRR+K +VE LP K E I +S +QR Y +L+ D + GK
Sbjct: 973 RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT 1032
Query: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI------------VSNSGKMVVLDKL 494
L+N +MQLRK CNHPY+F E + EH+ SGK +LD++
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRI 1088
Query: 495 LAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQR 554
L KL+ +VL+F QMT L+ I+EDY +RG++Y RLDG T E+R
Sbjct: 1089 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG------------ 1136
Query: 555 EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQK 614
++ FN P S FIF+LSTRAGGLG+NL SAD VI++DSDWNP DLQA DRAHRIGQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 615 KPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGAT 674
VRV RL T N+VEE+I+ A+ KL +D VIQ G + DQ+S+ + LQ I
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAILEHEE 1255
Query: 675 HVFASKESEL-TDEDITTILERGEKK 699
+E E+ DE + ++ R E++
Sbjct: 1256 Q--DEEEDEVPDDETVNQMIARHEEE 1279
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 462 bits (1188), Expect = e-130
Identities = 277/686 (40%), Positives = 390/686 (56%), Gaps = 73/686 (10%)
Query: 60 NVSSFQLKLAAKAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQ 114
+V S ++ APK+ + EM+P YE ++D + ++ E QP A
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS---EEEEEEEEEEQPQAA 677
Query: 115 KSPTSPLNMKLGRPRIKKDEKQSLISAGDYRH--RRTEQEEDEE----------LLSESR 162
+ PT P+ K P D+ +S D RH +Q+ D+E L S
Sbjct: 678 QPPTLPVEEKKKIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL 222
V R + + + G L+ YQI+GL WL+SLY N +NGILADEMGLGKT+QTIAL+
Sbjct: 734 VAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI 793
Query: 223 GYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
YL ++ I GP +++VP STL NW EF +W PS+ + + G AR AF+ ++ G+
Sbjct: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGK 852
Query: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGT 341
++V +T+YE +IK+K + K W+Y+++DE HR+KN KL++++ + + RLLLTGT
Sbjct: 853 FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 342 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVL 391
PLQN L ELWALLNFLLP +F S F+ WF+ + +K ++ RLH VL
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL 972
Query: 392 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDK 446
+PFLLRR+K +VE LP K E I +S +QR Y +L+ D + GK
Sbjct: 973 RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT 1032
Query: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI------------VSNSGKMVVLDKL 494
L+N +MQLRK CNHPY+F E + EH+ SGK +LD++
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRI 1088
Query: 495 LAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQR 554
L KL+ +VL+F QMT L+ I+EDY +RG++Y RLDG T E+R
Sbjct: 1089 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG------------ 1136
Query: 555 EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQK 614
++ FN P S FIF+LSTRAGGLG+NL SAD VI++DSDWNP DLQA DRAHRIGQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 615 KPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGAT 674
VRV RL T N+VEE+I+ A+ KL +D VIQ G + DQ+S+ + LQ I
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAILEHEE 1255
Query: 675 HVFASKESEL-TDEDITTILERGEKK 699
+E E+ DE + ++ R E++
Sbjct: 1256 Q--DEEEDEVPDDETVNQMIARHEEE 1279
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 461 bits (1186), Expect = e-129
Identities = 271/655 (41%), Positives = 377/655 (57%), Gaps = 70/655 (10%)
Query: 60 NVSSFQLKLAAKAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQ 114
+V S ++ APK+ + EM+P YE ++D + ++ E QP A
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS---EEEEEEEEEEQPQAA 677
Query: 115 KSPTSPLNMKLGRPRIKKDEKQSLISAGDYRH--RRTEQEEDEE----------LLSESR 162
+ PT P+ K P D+ +S D RH +Q+ D+E L S
Sbjct: 678 QPPTLPVEEKKKIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL 222
V R + + + G L+ YQI+GL WL+SLY N +NGILADEMGLGKT+QTIAL+
Sbjct: 734 VAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI 793
Query: 223 GYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
YL ++ I GP +++VP STL NW EF +W PS+ + + G AR AF+ ++ G+
Sbjct: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGK 852
Query: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGT 341
++V +T+YE +IK+K + K W+Y+++DE HR+KN KL++++ + + RLLLTGT
Sbjct: 853 FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 342 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVL 391
PLQN L ELWALLNFLLP +F S F+ WF+ + +K ++ RLH VL
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL 972
Query: 392 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDK 446
+PFLLRR+K +VE LP K E I +S +QR Y +L+ D + GK
Sbjct: 973 RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT 1032
Query: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI------------VSNSGKMVVLDKL 494
L+N +MQLRK CNHPY+F E + EH+ SGK +LD++
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRI 1088
Query: 495 LAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQR 554
L KL+ +VL+F QMT L+ I+EDY +RG++Y RLDG T E+R
Sbjct: 1089 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG------------ 1136
Query: 555 EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQK 614
++ FN P S FIF+LSTRAGGLG+NL SAD VI++DSDWNP DLQA DRAHRIGQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 615 KPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI 669
VRV RL T N+VEE+I+ A+ KL +D VIQ G + DQ+S+ + LQ I
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAI 1250
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 461 bits (1186), Expect = e-129
Identities = 271/655 (41%), Positives = 377/655 (57%), Gaps = 70/655 (10%)
Query: 60 NVSSFQLKLAAKAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQ 114
+V S ++ APK+ + EM+P YE ++D + ++ E QP A
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS---EEEEEEEEEEQPQAA 677
Query: 115 KSPTSPLNMKLGRPRIKKDEKQSLISAGDYRH--RRTEQEEDEE----------LLSESR 162
+ PT P+ K P D+ +S D RH +Q+ D+E L S
Sbjct: 678 QPPTLPVEEKKKIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL 222
V R + + + G L+ YQI+GL WL+SLY N +NGILADEMGLGKT+QTIAL+
Sbjct: 734 VAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI 793
Query: 223 GYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
YL ++ I GP +++VP STL NW EF +W PS+ + + G AR AF+ ++ G+
Sbjct: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGK 852
Query: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGT 341
++V +T+YE +IK+K + K W+Y+++DE HR+KN KL++++ + + RLLLTGT
Sbjct: 853 FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 342 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVL 391
PLQN L ELWALLNFLLP +F S F+ WF+ + +K ++ RLH VL
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL 972
Query: 392 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDK 446
+PFLLRR+K +VE LP K E I +S +QR Y +L+ D + GK
Sbjct: 973 RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT 1032
Query: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI------------VSNSGKMVVLDKL 494
L+N +MQLRK CNHPY+F E + EH+ SGK +LD++
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRI 1088
Query: 495 LAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQR 554
L KL+ +VL+F QMT L+ I+EDY +RG++Y RLDG T E+R
Sbjct: 1089 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG------------ 1136
Query: 555 EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQK 614
++ FN P S FIF+LSTRAGGLG+NL SAD VI++DSDWNP DLQA DRAHRIGQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 615 KPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI 669
VRV RL T N+VEE+I+ A+ KL +D VIQ G + DQ+S+ + LQ I
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAI 1250
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 461 bits (1186), Expect = e-129
Identities = 271/655 (41%), Positives = 377/655 (57%), Gaps = 70/655 (10%)
Query: 60 NVSSFQLKLAAKAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQ 114
+V S ++ APK+ + EM+P YE ++D + ++ E QP A
Sbjct: 621 HVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGS---EEEEEEEEEEQPQAA 677
Query: 115 KSPTSPLNMKLGRPRIKKDEKQSLISAGDYRH--RRTEQEEDEE----------LLSESR 162
+ PT P+ K P D+ +S D RH +Q+ D+E L S
Sbjct: 678 QPPTLPVEEKKKIPDPDSDD----VSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 163 KTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALL 222
V R + + + G L+ YQI+GL WL+SLY N +NGILADEMGLGKT+QTIAL+
Sbjct: 734 VAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALI 793
Query: 223 GYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE 282
YL ++ I GP +++VP STL NW EF +W PS+ + + G AR AF+ ++ G+
Sbjct: 794 TYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFV-PQLRSGK 852
Query: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGT 341
++V +T+YE +IK+K + K W+Y+++DE HR+KN KL++++ + + RLLLTGT
Sbjct: 853 FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT 912
Query: 342 PLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVL 391
PLQN L ELWALLNFLLP +F S F+ WF+ + +K ++ RLH VL
Sbjct: 913 PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL 972
Query: 392 KPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDK 446
+PFLLRR+K +VE LP K E I +S +QR Y +L+ D + GK
Sbjct: 973 RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT 1032
Query: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI------------VSNSGKMVVLDKL 494
L+N +MQLRK CNHPY+F E + EH+ SGK +LD++
Sbjct: 1033 KTLMNTIMQLRKICNHPYMFQHIEE----SFSEHLGFTGGIVQGLDLYRASGKFELLDRI 1088
Query: 495 LAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQR 554
L KL+ +VL+F QMT L+ I+EDY +RG++Y RLDG T E+R
Sbjct: 1089 LPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG------------ 1136
Query: 555 EAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQK 614
++ FN P S FIF+LSTRAGGLG+NL SAD VI++DSDWNP DLQA DRAHRIGQ+
Sbjct: 1137 MLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQ 1196
Query: 615 KPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI 669
VRV RL T N+VEE+I+ A+ KL +D VIQ G + DQ+S+ + LQ I
Sbjct: 1197 NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAI 1250
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 453 bits (1166), Expect = e-127
Identities = 310/904 (34%), Positives = 479/904 (52%), Gaps = 99/904 (10%)
Query: 55 KKKEKNVSSFQLKLAAK-------APKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAH 107
KKKE + + K++ + + E++ +Y+ + K + L QT+ AH
Sbjct: 342 KKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQIVERVIAVKTSKSTLGQTDFPAH 401
Query: 108 FIQPSAQKSPTSPLNMKLGRPRIKKD-EKQSLISAG-----DYRHRRTEQEEDEELLSES 161
+P+ P L +G P + E ++LI D H R + ++
Sbjct: 402 SRKPAPSNEPEY-LCKWMGLPYSECSWEDEALIGKKFQNCIDSFHSRNNSKTIPTRECKA 460
Query: 162 RKTSNVCIRFEVSPSYVKGG--PLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTI 219
K + + P+Y+ G LRDYQ+ GLNWL + + ILADEMGLGKT+QTI
Sbjct: 461 LKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTI 520
Query: 220 ALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAA-----FI 274
+ L YL H + GP +++VP STL +W EF+ W P + V+ ++GD +R +I
Sbjct: 521 SFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWI 580
Query: 275 RDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTN 334
+ +++ +T+YE+++K+K+V +W +L +DEAHR+KN+ S L + + +FKS +
Sbjct: 581 HSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNH 640
Query: 335 RLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPF 394
RLL+TGTPLQN+L ELW+LL+F++P+ F +DF+ + G + + LH VL+PF
Sbjct: 641 RLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE----DHGKGRENGYQSLHKVLEPF 696
Query: 395 LLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILM 454
LLRR+K DVEKSLP K E + + +S +Q+++Y IL ++ L + LNI+M
Sbjct: 697 LLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVM 756
Query: 455 QLRKCCNHPYLFDGAEPGPPYTTDEHIVS---NSGKMVVLDKLLAKLKEQGSRVLIFSQM 511
+L+KCCNH YL E E ++S +SGK+++LDKLL +L+E+G+RVLIFSQM
Sbjct: 757 ELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRVLIFSQM 816
Query: 512 TRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFM 571
R+LDIL +Y + Y + RLDG E R ++A++ FNA S F F+
Sbjct: 817 VRMLDILAEYLTIKHYPFQRLDGSIKGEIR------------KQALDHFNADGSEDFCFL 864
Query: 572 LSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEER 631
LSTRAGGLGINLASAD V+++DSDWNPQ DLQA RAHRIGQKK V ++RL+T TVEE
Sbjct: 865 LSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEE 924
Query: 632 IVERAEIKLRLDSIVIQQ----GRLI------DQQSNKLAKEEMLQMIRHGATHVF---A 678
I+ERA+ K+ LD +VIQ+ GR I SN KEE+ +++ GA +F
Sbjct: 925 IIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFNKEELTAILKFGAEDLFKELE 984
Query: 679 SKESELTDEDITTILERGEKKTAEMNERL--QKMGESSLRNF-RMDIEQSLYKFEGEDYR 735
+ESE + DI IL E + E++ + + + + NF M+ E+ L + +D+
Sbjct: 985 GEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEEELEERPHKDWD 1044
Query: 736 EKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPR 795
E + +E +R+++ + Y +R S K Q N D R
Sbjct: 1045 EIIPEEQRKKVEEEERQKELE---EIYMLPRIRSSTKK--------AQTNDSDSDTESKR 1093
Query: 796 LFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAEPLTPEETEEKEKLLTQ 855
+ ++ E + D +P K L +
Sbjct: 1094 ------------------------QAQRSSASESETEDSDDDKKPKRRGRPRSVRKDLVE 1129
Query: 856 GFTNWTKRDFNQFIKANEKYG--RDDIDNIAREVE--GKSPEEVMEYSAVFWERC-NELQ 910
GFT+ + +FIKA +K+G + ++ IAR+ E KS ++ + C + +Q
Sbjct: 1130 GFTD---AEIRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELIHNSCVSAMQ 1186
Query: 911 DIEK 914
+ E+
Sbjct: 1187 EYEE 1190
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 440 bits (1131), Expect = e-123
Identities = 262/672 (38%), Positives = 385/672 (57%), Gaps = 75/672 (11%)
Query: 71 KAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKL 125
+APK+ + EM+P YE ++D + ++ E Q + +K P + ++
Sbjct: 610 EAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEV 669
Query: 126 GRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSN--------VCIRFEVSPSY 177
+KD KQ + +A + +DE + S + S + R E +
Sbjct: 670 S----EKDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSAL 718
Query: 178 VKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMV 237
+ G L+ YQ++GL W++SLY N +NGILADEMGLGKT+QTIAL+ YL ++ + GP+++
Sbjct: 719 LINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLI 778
Query: 238 LVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEK 297
+VP STL NW EF +W PS+ I + G R + + ++ G+++V +T+YE +IK+K
Sbjct: 779 IVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV-PQLRSGKFNVLLTTYEYIIKDK 837
Query: 298 SVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGTPLQNNLHELWALLNF 356
+ K W+Y+++DE HR+KN KL++++ + + R+LLTGTPLQN L ELWALLNF
Sbjct: 838 HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNF 897
Query: 357 LLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVLKPFLLRRIKTDVEKS 406
LLP +F S F+ WF+ + ++ ++ RLH VL+PFLLRR+K +VE
Sbjct: 898 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 957
Query: 407 LPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 461
LP K E I +S +Q+ Y IL+ D + GK L+N +MQLRK CN
Sbjct: 958 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICN 1017
Query: 462 HPYLFDGAEPGPPYTTDEHI-VSN-----------SGKMVVLDKLLAKLKEQGSRVLIFS 509
HPY+F E + EH+ SN SGK +LD++L KL+ RVL+F
Sbjct: 1018 HPYMFQHIEE----SFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFC 1073
Query: 510 QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFI 569
QMT L+ I+EDY +R + Y RLDG T E+R ++ FN P S FI
Sbjct: 1074 QMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA------------ALLKKFNEPGSQYFI 1121
Query: 570 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 629
F+LSTRAGGLG+NL +AD V+++DSDWNP DLQA DRAHRIGQ+ VRV RL T N+VE
Sbjct: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
Query: 630 ERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELT--DE 687
E+I+ A+ KL +D VIQ G + DQ+S+ + LQ I H ++E + DE
Sbjct: 1182 EKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAI---LEHEEENEEEDEVPDDE 1237
Query: 688 DITTILERGEKK 699
+ ++ R E++
Sbjct: 1238 TLNQMIARREEE 1249
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 440 bits (1131), Expect = e-123
Identities = 262/672 (38%), Positives = 385/672 (57%), Gaps = 75/672 (11%)
Query: 71 KAPKSEK-----EMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQKSPTSPLNMKL 125
+APK+ + EM+P YE ++D + ++ E Q + +K P + ++
Sbjct: 610 EAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEV 669
Query: 126 GRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSN--------VCIRFEVSPSY 177
+KD KQ + +A + +DE + S + S + R E +
Sbjct: 670 S----EKDAKQIIETA-------KQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQSAL 718
Query: 178 VKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMV 237
+ G L+ YQ++GL W++SLY N +NGILADEMGLGKT+QTIAL+ YL ++ + GP+++
Sbjct: 719 LINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLI 778
Query: 238 LVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEK 297
+VP STL NW EF +W PS+ I + G R + + ++ G+++V +T+YE +IK+K
Sbjct: 779 IVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLV-PQLRSGKFNVLLTTYEYIIKDK 837
Query: 298 SVFKKFHWRYLVIDEAHRIKNEKSKLSEIVR-EFKSTNRLLLTGTPLQNNLHELWALLNF 356
+ K W+Y+++DE HR+KN KL++++ + + R+LLTGTPLQN L ELWALLNF
Sbjct: 838 HILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNF 897
Query: 357 LLPDVFNSADDFDSWFDTKNCLGDQK----------LVERLHAVLKPFLLRRIKTDVEKS 406
LLP +F S F+ WF+ + ++ ++ RLH VL+PFLLRR+K +VE
Sbjct: 898 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 957
Query: 407 LPPKKEIKIYLGLSKMQREWYTK-----ILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 461
LP K E I +S +Q+ Y IL+ D + GK L+N +MQLRK CN
Sbjct: 958 LPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICN 1017
Query: 462 HPYLFDGAEPGPPYTTDEHI-VSN-----------SGKMVVLDKLLAKLKEQGSRVLIFS 509
HPY+F E + EH+ SN SGK +LD++L KL+ RVL+F
Sbjct: 1018 HPYMFQHIEE----SFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFC 1073
Query: 510 QMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFI 569
QMT L+ I+EDY +R + Y RLDG T E+R ++ FN P S FI
Sbjct: 1074 QMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRA------------ALLKKFNEPGSQYFI 1121
Query: 570 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 629
F+LSTRAGGLG+NL +AD V+++DSDWNP DLQA DRAHRIGQ+ VRV RL T N+VE
Sbjct: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
Query: 630 ERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELT--DE 687
E+I+ A+ KL +D VIQ G + DQ+S+ + LQ I H ++E + DE
Sbjct: 1182 EKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFLQAI---LEHEEENEEEDEVPDDE 1237
Query: 688 DITTILERGEKK 699
+ ++ R E++
Sbjct: 1238 TLNQMIARREEE 1249
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 438 bits (1126), Expect = e-122
Identities = 249/609 (40%), Positives = 372/609 (61%), Gaps = 42/609 (6%)
Query: 169 IRFEVSPSYV---KGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYL 225
+ + PSY+ +G LRDYQ+ GLNWL + G + ILADEMGLGKT+QTI+ L YL
Sbjct: 464 VALKKQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYL 523
Query: 226 KHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGE--- 282
H + GP +++VP STL +W E + W + + ++GD ++R E +
Sbjct: 524 FHEHQLYGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKR 583
Query: 283 --WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTG 340
+++ +T+YE+++K+K+ +W ++ +DEAHR+KN+ S L + + +FKS +RLL+TG
Sbjct: 584 LKFNILLTTYEILLKDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 643
Query: 341 TPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIK 400
TPLQN+L ELW+LL+F++P+ F+S +DF+ ++ G + LH L+PFLLRR+K
Sbjct: 644 TPLQNSLKELWSLLHFIMPEKFSSWEDFEE----EHGKGREYGYASLHKELEPFLLRRVK 699
Query: 401 TDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCC 460
DVEKSLP K E + + +S +Q+++Y IL ++ L+ K LNI+M+L+KCC
Sbjct: 700 KDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCC 759
Query: 461 NHPYLFDGAEPGPPYTTDE---HIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDI 517
NH YL + Y E H++ +SGK+++LDKLL +L+E+G+RVLIFSQM R+LDI
Sbjct: 760 NHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDI 819
Query: 518 LEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAG 577
L +Y +R + + RLDG E R ++A++ FNA S F F+LSTRAG
Sbjct: 820 LAEYLKYRQFPFQRLDGSIKGELR------------KQALDHFNAEGSEDFCFLLSTRAG 867
Query: 578 GLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAE 637
GLGINLASAD V+++DSDWNPQ DLQA RAHRIGQKK V ++RL+T +VEE I+ERA+
Sbjct: 868 GLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAK 927
Query: 638 IKLRLDSIVIQQ----GRLI------DQQSNKLAKEEMLQMIRHGATHVF---ASKESEL 684
K+ LD +VIQ+ G+ + S KEE+ +++ GA +F +E E
Sbjct: 928 KKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGAEELFKEPEGEEQEP 987
Query: 685 TDEDITTILERGEKKTAEMNERLQKMGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVE 744
+ DI IL+R E T E +G+ L F++ ++ + + E E+ E
Sbjct: 988 QEMDIDEILKRAE--THENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEE 1045
Query: 745 WIEPPKRER 753
I +R R
Sbjct: 1046 IIPEDQRRR 1054
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 435 bits (1118), Expect = e-121
Identities = 275/810 (33%), Positives = 436/810 (53%), Gaps = 77/810 (9%)
Query: 136 QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190
+ LI D R +++ +EL + S T++ +++E P ++ GG L YQ+ G
Sbjct: 684 RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 743
Query: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
LNWL + G + ILADEMGLGKT+QTI L L + GP +V P ST+ NW E
Sbjct: 744 LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 803
Query: 251 FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291
F+ W P V+ + GDKD+RA D + G ++ V +TSYE
Sbjct: 804 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 863
Query: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351
++ +++ W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+
Sbjct: 864 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
Query: 352 ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411
LLNFL P+ FN+ + F F + + +++LH +L P +LRR+K DV K++P K
Sbjct: 924 HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 980
Query: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469
E+ + + LS MQ+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A
Sbjct: 981 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1040
Query: 470 -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526
P P E ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + G
Sbjct: 1041 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1100
Query: 527 YEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASA 586
Y+Y R+DG R+ EAI+ FNAP + +F F+LSTRAGGLGINLA+A
Sbjct: 1101 YKYERIDGGITGALRQ------------EAIDRFNAPGAQQFCFLLSTRAGGLGINLATA 1148
Query: 587 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646
D VI++DSDWNP D+QA RAHRIGQ V ++R +T +VEERI + A+ K+ L +V
Sbjct: 1149 DTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV 1208
Query: 647 IQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNER 706
++ G + ++ ++K+E+ +++ G +F + E+ ++++ + A + +R
Sbjct: 1209 VRPG--LGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDR 1266
Query: 707 LQKMGE----SSLRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAV 759
Q E ++ + + + Y ED E++ + E ++P E+ +
Sbjct: 1267 NQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHY 1326
Query: 760 DAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNP 819
+ + R + K R KQ N D E + ++G + +
Sbjct: 1327 EQQQEDLAR----NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDE 1372
Query: 820 DIPNPALAQREEQKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGR 877
D +R+ ++++ + +PL P + GF R F+ A ++G
Sbjct: 1373 DFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGM 1429
Query: 878 DDIDN-----IAREVEGKSPEEVMEYSAVF 902
D + R++ GK+ +E Y ++F
Sbjct: 1430 PPQDAFTTQWLVRDLRGKTEKEFKAYVSLF 1459
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 435 bits (1118), Expect = e-121
Identities = 275/810 (33%), Positives = 436/810 (53%), Gaps = 77/810 (9%)
Query: 136 QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190
+ LI D R +++ +EL + S T++ +++E P ++ GG L YQ+ G
Sbjct: 684 RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 743
Query: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
LNWL + G + ILADEMGLGKT+QTI L L + GP +V P ST+ NW E
Sbjct: 744 LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 803
Query: 251 FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291
F+ W P V+ + GDKD+RA D + G ++ V +TSYE
Sbjct: 804 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 863
Query: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351
++ +++ W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+
Sbjct: 864 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
Query: 352 ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411
LLNFL P+ FN+ + F F + + +++LH +L P +LRR+K DV K++P K
Sbjct: 924 HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 980
Query: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469
E+ + + LS MQ+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A
Sbjct: 981 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1040
Query: 470 -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526
P P E ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + G
Sbjct: 1041 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1100
Query: 527 YEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASA 586
Y+Y R+DG R+ EAI+ FNAP + +F F+LSTRAGGLGINLA+A
Sbjct: 1101 YKYERIDGGITGALRQ------------EAIDRFNAPGAQQFCFLLSTRAGGLGINLATA 1148
Query: 587 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646
D VI++DSDWNP D+QA RAHRIGQ V ++R +T +VEERI + A+ K+ L +V
Sbjct: 1149 DTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV 1208
Query: 647 IQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNER 706
++ G + ++ ++K+E+ +++ G +F + E+ ++++ + A + +R
Sbjct: 1209 VRPG--LGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDR 1266
Query: 707 LQKMGE----SSLRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAV 759
Q E ++ + + + Y ED E++ + E ++P E+ +
Sbjct: 1267 NQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHY 1326
Query: 760 DAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNP 819
+ + R + K R KQ N D E + ++G + +
Sbjct: 1327 EQQQEDLAR----NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDE 1372
Query: 820 DIPNPALAQREEQKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGR 877
D +R+ ++++ + +PL P + GF R F+ A ++G
Sbjct: 1373 DFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGM 1429
Query: 878 DDIDN-----IAREVEGKSPEEVMEYSAVF 902
D + R++ GK+ +E Y ++F
Sbjct: 1430 PPQDAFTTQWLVRDLRGKTEKEFKAYVSLF 1459
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 435 bits (1118), Expect = e-121
Identities = 275/810 (33%), Positives = 436/810 (53%), Gaps = 77/810 (9%)
Query: 136 QSLISAGDYRHRRTEQEEDEELLSE---SRKTSNVCIRFEVSPSYVK--GGPLRDYQIRG 190
+ LI D R +++ +EL + S T++ +++E P ++ GG L YQ+ G
Sbjct: 743 RELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEG 802
Query: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
LNWL + G + ILADEMGLGKT+QTI L L + GP +V P ST+ NW E
Sbjct: 803 LNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWERE 862
Query: 251 FKRWVPSLRVICFVGDKDARAAF------IRDEMMPG-------------EWDVCVTSYE 291
F+ W P V+ + GDKD+RA D + G ++ V +TSYE
Sbjct: 863 FQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYE 922
Query: 292 MVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELW 351
++ +++ W LV+DEAHR+KN +SK ++ +K ++LLLTGTPLQNNL EL+
Sbjct: 923 LITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 982
Query: 352 ALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKK 411
LLNFL P+ FN+ + F F + + +++LH +L P +LRR+K DV K++P K
Sbjct: 983 HLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKT 1039
Query: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGA-- 469
E+ + + LS MQ+++Y IL ++ + LNS G +++ LLNI+M L+KCCNHPYLF A
Sbjct: 1040 ELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAM 1099
Query: 470 -EPGPPYTTDEH--IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 526
P P E ++ +SGK+++L K+L KLKEQG RVLIFSQMT++LD+LED+ + G
Sbjct: 1100 ESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEG 1159
Query: 527 YEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASA 586
Y+Y R+DG R+ EAI+ FNAP + +F F+LSTRAGGLGINLA+A
Sbjct: 1160 YKYERIDGGITGALRQ------------EAIDRFNAPGAQQFCFLLSTRAGGLGINLATA 1207
Query: 587 DVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIV 646
D VI++DSDWNP D+QA RAHRIGQ V ++R +T +VEERI + A+ K+ L +V
Sbjct: 1208 DTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLV 1267
Query: 647 IQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNER 706
++ G + ++ ++K+E+ +++ G +F + E+ ++++ + A + +R
Sbjct: 1268 VRPG--LGSKAGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDR 1325
Query: 707 LQKMGE----SSLRNFRMDIEQSLYKFEGED---YREKQKLGMVEWIEPPKRERKANYAV 759
Q E ++ + + + Y ED E++ + E ++P E+ +
Sbjct: 1326 NQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHY 1385
Query: 760 DAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNP 819
+ + R + K R KQ N D E + ++G + +
Sbjct: 1386 EQQQEDLAR----NLGKGKRVRKQVNYND---------AAQEDQDNQSEYSVGSE-EEDE 1431
Query: 820 DIPNPALAQREEQKKI--DGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGR 877
D +R+ ++++ + +PL P + GF R F+ A ++G
Sbjct: 1432 DFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNT---RQRKAFLNAVMRWGM 1488
Query: 878 DDIDN-----IAREVEGKSPEEVMEYSAVF 902
D + R++ GK+ +E Y ++F
Sbjct: 1489 PPQDAFTTQWLVRDLRGKTEKEFKAYVSLF 1518
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 432 bits (1112), Expect = e-121
Identities = 265/703 (37%), Positives = 396/703 (56%), Gaps = 52/703 (7%)
Query: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
LR YQ+ G+NWL + IL DEMGLGKT QTIAL YL N GP ++L P S
Sbjct: 46 LRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLS 105
Query: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKK 302
L NW E +R+ P L + + GDK+ RA +D + V +T+YE+ +K+ S K
Sbjct: 106 VLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEICLKDASFLKS 165
Query: 303 FHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVF 362
F W LV+DEAHR+KN+ S L + + EF LLLTGTP+QN+L EL++LL+F+ PD+F
Sbjct: 166 FPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLF 225
Query: 363 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKM 422
+ + D ++ + + LH +L+PFLLRR+K +V LP K E+ IY G+S +
Sbjct: 226 SKEEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSAL 285
Query: 423 QREWYTKILMKDIDVL-NSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHI 481
Q+++Y ILMKD+D N + K K++L NIL QLRKC +HPYLFDG EP P+ +H+
Sbjct: 286 QKKYYKAILMKDLDAFENETAK--KVKLQNILSQLRKCVDHPYLFDGVEP-EPFEVGDHL 342
Query: 482 VSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEER 541
SGK+ +LDKLLA L G RVL+FSQMT++LDIL+DY +RGY Y R+DG EER
Sbjct: 343 TEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEER 402
Query: 542 EDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVD 601
L ++ GQ+ F+F+LSTRAGG+G+NL +AD VI DSD+NPQ D
Sbjct: 403 H---LAIKNFGQQPI-----------FVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQND 448
Query: 602 LQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGR--LIDQQSNK 659
LQA RAHRIGQ K V+V RLI +TVEE + +A KL+L +++I+ G L Q+
Sbjct: 449 LQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAA 508
Query: 660 LAKEEMLQMIRHGATHVFASKESELTDEDITTILERGEKKTAEMNERLQKMGESSLRNFR 719
A ++ ++++ G + AS+ S + + D+ +IL GE K + E R+ +
Sbjct: 509 DADLQLSEILKFGLDKLLASEGSTMDEIDLESIL--GETKDGQWVSDALPAAEGGSRD-Q 565
Query: 720 MDIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIPKAPR 779
+ + +Y FEG+DY + EP K +RK+ F + + + + + KA +
Sbjct: 566 EEGKNHMYLFEGKDYSK----------EPSKEDRKS-------FEQLVNLQKTLLEKASQ 608
Query: 780 PPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPALAQREEQKKIDGAE 839
+ + P + +++ + + + + + + EE+K+
Sbjct: 609 EGRSLRNKGSVLIPGLVEGSTKRKRVLSPEELEDRQKKRQEAAAKRRRLIEEKKR----- 663
Query: 840 PLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDN 882
EE E K+K+ W ++ F +E+ +D++N
Sbjct: 664 --QKEEAEHKKKMAW-----WESNNYQSFCLPSEESEPEDLEN 699
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 426 bits (1095), Expect = e-119
Identities = 228/556 (41%), Positives = 343/556 (61%), Gaps = 51/556 (9%)
Query: 169 IRFEVSPSYVK--GGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLK 226
++F+ P Y+ GG L YQ+ GLNWL + G + ILADEMGLGKT+QTI L L
Sbjct: 684 VKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLY 743
Query: 227 HYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEM-------- 278
+ GP++V P ST+ NW EF+ W P V+ + GDK++R+ +E
Sbjct: 744 KEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIR 803
Query: 279 -----------MPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIV 327
+ ++ V +TSYE++ ++++ W LV+DEAHR+KN +SK ++
Sbjct: 804 SGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVL 863
Query: 328 REFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERL 387
+K +LLLTGTPLQNNL EL+ LLNFL P+ FN+ + F F + + +++L
Sbjct: 864 NSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFAD---ISKEDQIKKL 920
Query: 388 HAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKM 447
H +L P +LRR+K DV K++P K E+ + + LS+MQ+++Y IL ++ + LNS G +++
Sbjct: 921 HDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV 980
Query: 448 RLLNILMQLRKCCNHPYLFDGAEPGPPYTTD-----EHIVSNSGKMVVLDKLLAKLKEQG 502
LLNI+M L+KCCNHPYLF A P + +V +SGK+++L K+L KL+++G
Sbjct: 981 SLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEG 1040
Query: 503 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNA 562
RVLIFSQMT++LD+LED+ + GY+Y R+DG R+ EAI+ FNA
Sbjct: 1041 HRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ------------EAIDRFNA 1088
Query: 563 PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 622
P + +F F+LSTRAGGLGINLA+AD VI+YDSDWNP D+QA RAHRIGQ K V ++R
Sbjct: 1089 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1148
Query: 623 ITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKES 682
+T +VEERI + A+ K+ L +V++ G + +S + K+E+ +++ G
Sbjct: 1149 VTRASVEERITQVAKRKMMLTHLVVRPG--LGSKSGSMTKQELDDILKFGT--------E 1198
Query: 683 ELTDEDITTILERGEK 698
EL +D+ ++ +G++
Sbjct: 1199 ELFKDDVEGMMSQGQR 1214
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 419 bits (1078), Expect = e-117
Identities = 276/805 (34%), Positives = 422/805 (52%), Gaps = 112/805 (13%)
Query: 164 TSNVCIRFEVSPSYVK--GGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIAL 221
T + +++E P Y+ GG L YQ+ GLNWL + G + ILADEMGLGKT+QT
Sbjct: 705 TVDPTVKYERQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVF 764
Query: 222 LGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAF------IR 275
L L + GP +V P ST+ NW EF+ W P + V+ +VGDKD+RA
Sbjct: 765 LYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFE 824
Query: 276 DEMMPG-------------EWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSK 322
D + G ++ V +TSYE++ + ++ W L++DEAHR+KN +SK
Sbjct: 825 DNAIRGGKKASRMKKEASVKFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSK 884
Query: 323 LSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQK 382
++ + ++LLLTGTPLQNNL EL+ LLNFL P+ F++ + F F + +
Sbjct: 885 FFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFAD---IAKED 941
Query: 383 LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSG 442
+++LH +L P +LRR+K DV K++P K E+ + + LS MQ+++Y IL ++ + LN+ G
Sbjct: 942 QIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARG 1001
Query: 443 KMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTD-----EHIVSNSGKMVVLDKLLAK 497
+++ LLN++M L+KCCNHPYLF A P + ++ SGK+++L K+L
Sbjct: 1002 GGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKN 1061
Query: 498 LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAI 557
LKE G RVLIFSQMT++LD+LED+ GY+Y R+DG R+ EAI
Sbjct: 1062 LKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQ------------EAI 1109
Query: 558 EAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 617
+ FNAP + +F F+LSTRAGGLGINLA+AD VI+YDSDWNP D+QA RAHRIGQ K V
Sbjct: 1110 DRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV 1169
Query: 618 RVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVF 677
++R +T +VEERI + A+ K+ L +V++ G + ++ ++K+E+ +++ G +F
Sbjct: 1170 MIYRFVTRASVEERITQVAKKKMMLTHLVVRPG--LGSKTGSMSKQELDDILKFGTEELF 1227
Query: 678 A---------SKESE------LTDEDITTILERGEKKTAE-----MNERLQ--KMGESSL 715
+KE E D+ I +L+R + +T + MNE L K+ + +
Sbjct: 1228 KDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQYVV 1287
Query: 716 RNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYFREALRVSEPKIP 775
R M E+ + E++ + E ++P E+ + + + R +
Sbjct: 1288 REEEMGEEEEV---------EREIIKQEESVDPDYWEKLLRHHYEQQQEDLAR----NLG 1334
Query: 776 KAPRPPKQPNV----------QDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPNPA 825
K R KQ N QD Q + + +E + D +
Sbjct: 1335 KGKRIRKQVNYNDGSQEDRDWQDDQSDNQSDYSVASEE-------------GDEDFDERS 1381
Query: 826 LAQREEQKK---IDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKYGRDDIDN 882
A R +K D +PL P + GF R F+ A +YG D
Sbjct: 1382 EAPRRPSRKGLRNDKDKPLPPLLARVGGNIEVLGF---NARQRKAFLNAIMRYGMPPQDA 1438
Query: 883 -----IAREVEGKSPEEVMEYSAVF 902
+ R++ GKS +E Y ++F
Sbjct: 1439 FTTQWLVRDLRGKSEKEFKAYVSLF 1463
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 399 bits (1024), Expect = e-110
Identities = 233/569 (40%), Positives = 334/569 (58%), Gaps = 46/569 (8%)
Query: 156 ELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKT 215
E+ R S+ + E S Y LR+YQ+ G+NWL+ + N N ILADEMGLGKT
Sbjct: 434 EIKHVERPASDSWQKLEKSREYKNSNQLREYQLEGMNWLLFNWYNRKNCILADEMGLGKT 493
Query: 216 LQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIR 275
+Q+I L + R I GP +++ P ST+ NW EF+ W + I + G + +R +
Sbjct: 494 IQSITFLSEI-FLRGIHGPFLIIAPLSTITNWEREFRTWT-EMNAIVYHGSQISRQMIQQ 551
Query: 276 DEMMPGE-----------WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLS 324
EM+ + + V +T++EM++ + KK HW ++IDEAHR+KN KL
Sbjct: 552 YEMVYRDAQGNPLSGVFKFHVVITTFEMILADCPELKKIHWSCVIIDEAHRLKNRNCKLL 611
Query: 325 EIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLV 384
E ++ +++LLTGTPLQN++ EL++LLNFL P F S F F L ++ V
Sbjct: 612 EGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEFGD---LKTEEQV 668
Query: 385 ERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKM 444
++L ++LKP +LRR+K DVEK+L PK+E I + L+ +Q+++Y IL K+ L
Sbjct: 669 KKLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQ 728
Query: 445 DKM-RLLNILMQLRKCCNHPYLFDGAE------------PGPPYTTDEHIVSNSGKMVVL 491
M L+N +M+LRKCCNHPYL +GAE P P + ++ +GK+V++
Sbjct: 729 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLI 788
Query: 492 DKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFL 551
DKLL KL G +VLIFSQM R LDILEDY + R Y Y R+DG+ R+
Sbjct: 789 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQ--------- 839
Query: 552 GQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRI 611
AI+ F P+S +F+F+L TRAGGLGINL +AD I++DSDWNPQ DLQA R HRI
Sbjct: 840 ---AAIDRFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRI 896
Query: 612 GQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQ-----GRLIDQQSNKLAKEEML 666
GQ K V+V+RLIT N+ E + ++A +KL LD V+Q G QQ +K+ E++L
Sbjct: 897 GQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVEDLL 956
Query: 667 QMIRHGATHVFASKESELTDEDITTILER 695
+ +GA + S+ +EDI IL+R
Sbjct: 957 RKGAYGALMDEEDEGSKFCEEDIDQILQR 985
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 398 bits (1022), Expect = e-110
Identities = 237/589 (40%), Positives = 347/589 (58%), Gaps = 51/589 (8%)
Query: 139 ISAGDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLY 198
+ G R + Q EL +R ++ + E+S Y LR+YQ+ G+NWL+ +
Sbjct: 488 VDEGKIREFKRIQSRHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNW 547
Query: 199 ENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSL 258
N N ILADEMGLGKT+Q+IA L + + I GP +V+ P ST+ NW EF W +
Sbjct: 548 YNRQNCILADEMGLGKTIQSIAFLQEVYNV-GIHGPFLVIAPLSTITNWEREFNTWT-EM 605
Query: 259 RVICFVGDKDARAAFIRDEM---------MPG--EWDVCVTSYEMVIKEKSVFKKFHWRY 307
I + G +R + EM +PG ++D +T++EM++ + ++ WR
Sbjct: 606 NTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRC 665
Query: 308 LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADD 367
++IDEAHR+KN KL + ++ +++LLTGTPLQN + EL++LL+FL P F S +
Sbjct: 666 VIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESE 725
Query: 368 FDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWY 427
F F L ++ V++L A+LKP +LRR+K DVEK+L PK+E I + L+ +Q+++Y
Sbjct: 726 FLKDFGD---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYY 782
Query: 428 TKILMKDIDVLNS-SGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG------------PP 474
IL K+ L+ +G + LLN +M+LRKCCNHPYL +GAE P
Sbjct: 783 RAILEKNFSFLSKGAGHTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPH 842
Query: 475 YTTDEHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDG 534
+ +V ++GK+V++DKLL KLK G +VLIFSQM R LDILEDY + R Y Y R+DG
Sbjct: 843 DFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDG 902
Query: 535 QTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDS 594
+ R+ AI+ F+ P+S +F+F+L TRAGGLGINL +AD I++DS
Sbjct: 903 RVRGNLRQ------------AAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDS 950
Query: 595 DWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ-----Q 649
DWNPQ DLQA R HRIGQ K V+V+RLIT N+ E + ++A +KL LD V+Q
Sbjct: 951 DWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRD 1010
Query: 650 GRLIDQQSNKLAKEEMLQMIRHGATHVFASKE---SELTDEDITTILER 695
G + Q + +K+E+ ++R GA ++ S+ +EDI IL R
Sbjct: 1011 GNITGIQ--QFSKKEIEDLLRKGAYAAIMEEDDEGSKFCEEDIDQILLR 1057
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 395 bits (1015), Expect = e-109
Identities = 238/581 (40%), Positives = 340/581 (58%), Gaps = 54/581 (9%)
Query: 152 EEDEELLSESRKTSNV-------CIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNG 204
EE E+L+S +T V + E S Y LR+YQ+ G+NWL+ + N N
Sbjct: 930 EEFEKLMSREPETERVERPPADDWKKSESSREYKNNNKLREYQLEGVNWLLFNWYNMRNC 989
Query: 205 ILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFV 264
ILADEMGLGKT+Q+I L Y + + I GP +V+ P ST+ NW EF+ W L V+ +
Sbjct: 990 ILADEMGLGKTIQSITFL-YEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYH 1047
Query: 265 GDKDARAAFIRDEMM-----------PGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEA 313
G + +R EM ++ +T++EM++ + + WR +VIDEA
Sbjct: 1048 GSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILTDCPELRNIPWRCVVIDEA 1107
Query: 314 HRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD 373
HR+KN KL E ++ +++LLTGTPLQN + EL++LL+FL P F S F F
Sbjct: 1108 HRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFG 1167
Query: 374 TKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK 433
L ++ V++L A+LKP +LRR+K DVEK+L PK+E I + L+ +Q+++Y IL K
Sbjct: 1168 D---LKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1224
Query: 434 DIDVLNSSGKMDKM-RLLNILMQLRKCCNHPYLFDGAEPG------------PPYTTDEH 480
+ L+ G + LLN +M+LRKCCNHPYL +GAE P +
Sbjct: 1225 NFTFLSKGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQA 1284
Query: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540
++ +GK+V++DKLL KLK G RVLIFSQM R LDILEDY + R Y Y R+DG+
Sbjct: 1285 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNL 1344
Query: 541 REDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 600
R+ AI+ F+ P+S +F+F+L TRAGGLGINL +AD I++DSDWNPQ
Sbjct: 1345 RQ------------AAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQN 1392
Query: 601 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN-- 658
DLQA R HRIGQ K V+++RLIT N+ E + ++A +KL LD V+Q + +N
Sbjct: 1393 DLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGV 1452
Query: 659 -KLAKEEMLQMIRHGATHVFASKE---SELTDEDITTILER 695
+L+K+E+ ++R GA +E S+ +EDI IL R
Sbjct: 1453 QQLSKKEIEDLLRKGAYGALMDEEDEGSKFCEEDIDQILLR 1493
Score = 32.0 bits (71), Expect = 3.2
Identities = 49/214 (22%), Positives = 82/214 (38%), Gaps = 44/214 (20%)
Query: 764 REALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKVPRNPDIPN 823
+E EPK PKAP+ PK+P + + P+ K+ + PD
Sbjct: 660 KEKKEPKEPKTPKAPKIPKEPKEKKAKTATPK------------PKSSKKSSNKKPDSEA 707
Query: 824 PALAQREEQKKIDGAE---------PLTPEETEEKEKLLTQGFTNWTKR-----DFNQFI 869
AL ++ + K +G+E P P E +E + + + KR D I
Sbjct: 708 SALKKKVNKGKTEGSENSDLDKTPPPSPPPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKI 767
Query: 870 KANE-----KYGRDDIDNIAR-------EVEGKSPEEVMEYSAVFWER-CNELQDIEKIM 916
E GRD N ++ + EG E++M +V ++ E +IE+
Sbjct: 768 SDEEADDADAAGRDSPSNTSQSEQQESVDAEGPVVEKIMSSRSVKKQKESGEEVEIEEFY 827
Query: 917 AQIERGEARIQRRISIK-----KALDAKIARYKA 945
+ + + SI+ K + KI R+KA
Sbjct: 828 VKYKNFSYLHCQWASIEDLEKDKRIQQKIKRFKA 861
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 394 bits (1011), Expect = e-109
Identities = 253/655 (38%), Positives = 366/655 (55%), Gaps = 73/655 (11%)
Query: 162 RKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIAL 221
R SN+ + + S Y G LR+YQ+ GLNWL+ + N N ILADEMGLGKT+Q+I
Sbjct: 839 RPPSNIWKKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITF 898
Query: 222 LGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPG 281
L Y I GP +++ P ST+ NW EF+ W + V+ + G +R + EM
Sbjct: 899 L-YEILLTGIRGPFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFR 956
Query: 282 E-----------WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREF 330
+ + +T++EM++ WR ++IDEAHR+KN+ KL E ++
Sbjct: 957 DSQGRIIRGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLM 1016
Query: 331 KSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAV 390
+++LLTGTPLQN + EL++LL+FL P F S F F L ++ V++L A+
Sbjct: 1017 NLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFGD---LKTEEQVQKLQAI 1073
Query: 391 LKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNS-SGKMDKMRL 449
LKP +LRR+K DVEK L PK+E I + L+ +Q+++Y IL K+ L+ +G+ + L
Sbjct: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNL 1133
Query: 450 LNILMQLRKCCNHPYLFDGAEPG---------PPYTTDEHI---VSNSGKMVVLDKLLAK 497
+N +M+LRKCCNHPYL GAE P +D H+ + ++GK+V++DKLL K
Sbjct: 1134 VNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPK 1193
Query: 498 LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAI 557
+K G +VLIFSQM R LDILEDY + + Y Y R+DG+ R+ AI
Sbjct: 1194 MKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQ------------AAI 1241
Query: 558 EAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 617
+ F+ P+S +F+F+L TRAGGLGINL +AD I++DSDWNPQ DLQA R HRIGQ K V
Sbjct: 1242 DRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAV 1301
Query: 618 RVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN-----KLAKEEMLQMIRHG 672
+V+RL+T N+ E + +RA +KL LD V+Q + ++SN +L+K+E+ ++R G
Sbjct: 1302 KVYRLVTRNSYEREMFDRASLKLGLDKAVLQS--MSGRESNVGGIQQLSKKEIEDLLRRG 1359
Query: 673 ATHVFASKE---SELTDEDITTILERGEKK-TAEMNERLQKMGESSL--RNFRMDIEQSL 726
A +E S+ +EDI IL R K T E R ++S R DI
Sbjct: 1360 AYGAIMEEEDEGSKFCEEDIDQILLRRTKTITIESEGRGSTFAKASFVASGNRTDISLDD 1419
Query: 727 YKFEGEDYREKQKLGMVEWIEPPKRERKANYAVDAYF-REALRVSEPKIPKAPRP 780
F W K +KA ++A R +L + P+I K RP
Sbjct: 1420 PNF---------------W---QKWAKKAEIDIEAISGRNSLVIDTPRIRKQTRP 1456
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 313 bits (803), Expect = 4e-85
Identities = 195/527 (37%), Positives = 288/527 (54%), Gaps = 73/527 (13%)
Query: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q IA L YL N GPH+++VP S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
Query: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAF-IRDEMMPGEWDVCVTSYEMVIK---EKS 298
T+ NW+ E W P+L+V+C+ G ++ R +++V VT+Y I ++S
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
Query: 299 VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358
+F++ Y + DE H +KN S + + + NRLLLTGTP+QNNL EL +LLNF++
Sbjct: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
Query: 359 PDVFNSA-DDFDSWFDTKNCLGDQKLV---ERL-HA--VLKPFLLRRIKTDVEKSLPPKK 411
P +F+S+ + F +K D++ + ER+ HA ++KPF+LRR+K +V K LPPKK
Sbjct: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
Query: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----- 466
+ +S+ Q + Y + + +N+ + N++MQLRK NHP L
Sbjct: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795
Query: 467 ---------------DGAEPGPP--------------------------YTTDEHIVSNS 485
E P + D ++ +S
Sbjct: 796 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855
Query: 486 GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKF 545
GK VL +L++LK++G RV++FSQ T +LDILE + Y RLDG+T ER
Sbjct: 856 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER---- 911
Query: 546 LEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 605
I+ FN + F+F+LST+AGGLGINL SA+VVIL+D D NP D QA
Sbjct: 912 --------IHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 962
Query: 606 DRAHRIGQKKPVRVFRLITDNTVEERI--VERAEIKLRLDSIVIQQG 650
DR HR+GQ K V V +LI+ T+EE + + + ++KL D + +G
Sbjct: 963 DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEG 1009
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 313 bits (803), Expect = 4e-85
Identities = 195/527 (37%), Positives = 288/527 (54%), Gaps = 73/527 (13%)
Query: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q IA L YL N GPH+++VP S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
Query: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAF-IRDEMMPGEWDVCVTSYEMVIK---EKS 298
T+ NW+ E W P+L+V+C+ G ++ R +++V VT+Y I ++S
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
Query: 299 VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358
+F++ Y + DE H +KN S + + + NRLLLTGTP+QNNL EL +LLNF++
Sbjct: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
Query: 359 PDVFNSA-DDFDSWFDTKNCLGDQKLV---ERL-HA--VLKPFLLRRIKTDVEKSLPPKK 411
P +F+S+ + F +K D++ + ER+ HA ++KPF+LRR+K +V K LPPKK
Sbjct: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
Query: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----- 466
+ +S+ Q + Y + + +N+ + N++MQLRK NHP L
Sbjct: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLHRQYYT 795
Query: 467 ---------------DGAEPGPP--------------------------YTTDEHIVSNS 485
E P + D ++ +S
Sbjct: 796 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 855
Query: 486 GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKF 545
GK VL +L++LK++G RV++FSQ T +LDILE + Y RLDG+T ER
Sbjct: 856 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER---- 911
Query: 546 LEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 605
I+ FN + F+F+LST+AGGLGINL SA+VVIL+D D NP D QA
Sbjct: 912 --------IHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 962
Query: 606 DRAHRIGQKKPVRVFRLITDNTVEERI--VERAEIKLRLDSIVIQQG 650
DR HR+GQ K V V +LI+ T+EE + + + ++KL D + +G
Sbjct: 963 DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEG 1009
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 313 bits (802), Expect = 5e-85
Identities = 197/527 (37%), Positives = 290/527 (55%), Gaps = 75/527 (14%)
Query: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
L+ YQ GLNWL ++++G+NGILADEMGLGKT+Q IA L YL N GPH+++VP S
Sbjct: 497 LKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQEGN-NGPHLIVVPAS 555
Query: 243 TLHNWMNEFKRWVPSLRVICFVGDKDARAAF-IRDEMMPGEWDVCVTSYEMVIK---EKS 298
T+ NW+ E W P+L+V+C+ G ++ R +++V VT+Y I ++S
Sbjct: 556 TIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRS 615
Query: 299 VFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLL 358
+F++ Y + DE H +KN S + + + NRLLLTGTP+QNNL EL +LLNF++
Sbjct: 616 LFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVM 675
Query: 359 PDVFNSA-DDFDSWFDTKNCLGDQKLV---ERL-HA--VLKPFLLRRIKTDVEKSLPPKK 411
P +F+S+ + F +K D++ + ER+ HA ++KPF+LRR+K +V K LPPKK
Sbjct: 676 PHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEVLKQLPPKK 735
Query: 412 EIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLF----- 466
+ +S+ Q + Y + + +N+ K +M N++MQLRK NHP L
Sbjct: 736 DRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEM--CNVMMQLRKMANHPLLHRQYYT 793
Query: 467 ---------------DGAEPGPP--------------------------YTTDEHIVSNS 485
E P + D ++ +S
Sbjct: 794 AEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILDS 853
Query: 486 GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKF 545
GK VL +L++LK++G RV++FSQ T +LDILE + Y RLDG+T ER
Sbjct: 854 GKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISER---- 909
Query: 546 LEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 605
I+ FN + F+F+LST+AGGLGINL SA+VVIL+D D NP D QA
Sbjct: 910 --------IHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAE 960
Query: 606 DRAHRIGQKKPVRVFRLITDNTVEERI--VERAEIKLRLDSIVIQQG 650
DR HR+GQ K V V +LI+ T+EE + + + ++KL D + +G
Sbjct: 961 DRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEG 1007
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 276 bits (705), Expect = 1e-73
Identities = 170/463 (36%), Positives = 258/463 (55%), Gaps = 34/463 (7%)
Query: 27 EQPGPSTSQEEGAAAAATEATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEK 86
E GP ++E +++++ + ++ E +++++ + ++ + +SE E + + +
Sbjct: 478 EPEGPVEAEEPPQEDSSSQSDSVEDRSEDEEDEHSEEEETSGSSASEESESEESEDAQSQ 537
Query: 87 MKADRAKR-----FEFLLKQTELFAHFIQPSAQKSPTSPLNMKLGRPRIKKDEKQSLISA 141
+AD + E+LL + E + + A P +P LG K E + +A
Sbjct: 538 SQADEEEEDDDFGVEYLLARDEEQS---EADAGSGPPTPGPTTLG----PKKEITDIAAA 590
Query: 142 GDYRHRRTEQEEDEELLSESRKTSNVCIRFEVSPSYVKGGPLRDYQIRGLNWLISLYENG 201
+ + Q + L + KT P ++G LR+YQ GL+WL+++YE
Sbjct: 591 AE-----SLQPKGYTLATTQVKTP--------IPLLLRG-QLREYQHIGLDWLVTMYEKK 636
Query: 202 VNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVI 261
+NGILADEMGLGKT+QTI+LL +L + GPH+++VP S + NW E KRW PS +++
Sbjct: 637 LNGILADEMGLGKTIQTISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKIL 696
Query: 262 CFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKS 321
+ G + R + P + VC+TSY++V+++ F++ +WRYL++DEA IKN KS
Sbjct: 697 TYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKS 756
Query: 322 KLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD---TKNCL 378
+ + + F S RLLLTGTPLQN+L ELW+L++FL+P VF S +F WF T
Sbjct: 757 QRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIE 816
Query: 379 GDQK----LVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKD 434
G Q+ LV+RLH VL+PFLLRR+K DVEK +P K E I LSK QR Y M
Sbjct: 817 GSQEYNEGLVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDD-FMAQ 875
Query: 435 IDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTT 477
+ M ++NILMQLRK CNHP LFD P+ T
Sbjct: 876 TTTKETLATGHFMSVINILMQLRKVCNHPNLFDPRPVTSPFIT 918
Score = 153 bits (387), Expect = 7e-37
Identities = 110/334 (32%), Positives = 164/334 (49%), Gaps = 50/334 (14%)
Query: 486 GKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKF 545
GK+ L LL +LK +G RVLIF+QMTR+LD+LE + + G+ Y RLDG T E+R+
Sbjct: 2043 GKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQ--- 2099
Query: 546 LEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAM 605
+E FNA + F F+LSTR+GG+G+NL AD V+ YDSDWNP +D QA
Sbjct: 2100 ---------ALMERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQ 2149
Query: 606 DRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLI------------ 653
DR HRIGQ + V ++RLI++ TVEE I+++A K L + I+ G
Sbjct: 2150 DRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIREL 2209
Query: 654 --------DQQSNKLAKEEMLQMIRHGATHVFASKESELTD-EDITTILERGEKKTAEMN 704
S A EE + + TH+ D EDI + ++ AE+
Sbjct: 2210 FDMPLEEPSSSSVPSAPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELA 2269
Query: 705 ERLQK------MGESSLRNFRMDIEQSLYKFEGEDYREKQKLGMVEWIEPPKR--ERKAN 756
E + GE + R D E S E++ +VE + P +R +
Sbjct: 2270 EFNENDGFPAGEGEEAGRPGAEDEEMS--------RAEQEIAALVEQLTPIERYAMKFLE 2321
Query: 757 YAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQ 790
+++ RE L+ +E ++ A + Q + F+
Sbjct: 2322 ASLEEVSREELKQAEEQVEAARKDLDQAKEEVFR 2355
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 273 bits (699), Expect = 5e-73
Identities = 203/658 (30%), Positives = 321/658 (48%), Gaps = 75/658 (11%)
Query: 35 QEEGAAAAATEATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKR 94
+ EG + TE+ E++++ V + L+ +YE K KR
Sbjct: 362 EAEGDSEGEESEYFPTEEEEEEEDDEVEGAEADLSGDGT--------DYELKPLPKGGKR 413
Query: 95 FEFLLKQTELFAHFIQPSAQKSPTSPLN------MKLGRPRIKKDEKQSLISAGDYRHRR 148
+ + Q E+ F S +++ + + K+GR R DE + R
Sbjct: 414 QKKVPVQ-EIDDDFFPSSGEEAEAASVGEGGGGGRKVGRYRDDGDEDYYKQRLRRWNKLR 472
Query: 149 TEQEEDEELLSESRKTSNVCIR--FEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGIL 206
+ +E L + + S+ F+V K L YQ G+ WL L+ GIL
Sbjct: 473 LQDKEKRLKLEDDSEESDAEFDEGFKVPGFLFK--KLFKYQQTGVRWLWELHCQQAGGIL 530
Query: 207 ADEMGLGKTLQTIALLGYLKH---------YR-NIPGPHMVLVPKSTLHNWMNEFKRWVP 256
DEMGLGKT+Q IA L L + YR GP +++ P + +H W+ EF W P
Sbjct: 531 GDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWP 590
Query: 257 SLRVICF--VGD-KDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRYLVIDEA 313
RV G + IRD + + +TSY + + ++ W Y+++DE
Sbjct: 591 PFRVAILHETGSYTHKKEKLIRD--VAHCHGILITSYSYIRLMQDDISRYDWHYVILDEG 648
Query: 314 HRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFD 373
H+I+N + ++ ++F++ +R++L+G+P+QNNL ELW+L +F+ P + F F
Sbjct: 649 HKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFS 708
Query: 374 TKNCLGDQ------------KLVERLHAVLKPFLLRRIKTDVEKSL--PPKKEIKIYLGL 419
+G K L + P+LLRR+K+DV+ SL P K E ++ L
Sbjct: 709 VPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRL 768
Query: 420 SKMQREWYTKIL-MKDI-DVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTT 477
+ Q + Y + K++ +LN +M++ + L+ LRK CNHP LF G
Sbjct: 769 TDEQHKVYQNFVDSKEVYRILNG-----EMQIFSGLIALRKICNHPDLFSGGPKNLKGLP 823
Query: 478 DEHIVSN-------SGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYC 530
D+ + + SGKM+V++ LL +QG RVL+FSQ ++LDILE + + Y Y
Sbjct: 824 DDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYL 883
Query: 531 RLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVI 590
++DG T R+ I +N ++S F+F+L+TR GGLG+NL A+ V+
Sbjct: 884 KMDGTTTIASRQP------------LITRYNE-DTSIFVFLLTTRVGGLGVNLTGANRVV 930
Query: 591 LYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQ 648
+YD DWNP D QA +RA RIGQKK V V+RL+T T+EE+I R K L + V++
Sbjct: 931 IYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLK 988
>gi|38708321 INO80 complex homolog 1 [Homo sapiens]
Length = 1556
Score = 265 bits (678), Expect = 1e-70
Identities = 167/488 (34%), Positives = 255/488 (52%), Gaps = 72/488 (14%)
Query: 56 KKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQK 115
KK + V K A K ++++D E E + R + FL+ QTEL+AHF+
Sbjct: 348 KKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQR--KLNFLITQTELYAHFMSRKRDM 405
Query: 116 SPTSPLNMKLGRPRIKKDEKQSLISAG--------DYR------------------HRRT 149
L + ++Q I G DY H+
Sbjct: 406 GHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQAR 465
Query: 150 EQEEDEEL-----------------LSESRKTSNVCIRF--EVSPSYVKGGPLRDYQIRG 190
+ DE+ ES +N IR ++ + G L+ YQ++G
Sbjct: 466 TRSFDEDAKESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKG 525
Query: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
+NWL +LYE G+NGILADEMGLGKT+Q+IALL +L NI GP +++ P STL+NW E
Sbjct: 526 MNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQE 585
Query: 251 FKRWVPSLRVICFVGDKDARAAFIRD------EMMPGEWDVCVTSYEMVIKEKSVFKKFH 304
F R+VP +V+ + G+ R R + V +TSY++V+++ F++
Sbjct: 586 FTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVK 645
Query: 305 WRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNS 364
W+Y+V+DEA +K+ S +I+ +F+ NRLLLTGTP+QN + ELWALL+F++P +F+S
Sbjct: 646 WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS 705
Query: 365 ADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIY 416
++F+ WF + K+ + D+ + RLH +LKPF+LRRIK DVE L K EI +Y
Sbjct: 706 HEEFNEWFSKDIESHAENKSAI-DENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMY 764
Query: 417 LGLSKMQREWY----TKILMKDIDVLNSSGKMDKMR-----LLNILMQLRKCCNHPYLFD 467
L+ Q+ Y KI ++D+ + +S G + + L+N++MQ RK CNHP LF+
Sbjct: 765 CQLTSRQKLLYQALKNKISIEDL-LQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFE 823
Query: 468 GAEPGPPY 475
E P+
Sbjct: 824 RQETWSPF 831
Score = 175 bits (444), Expect = 2e-43
Identities = 104/267 (38%), Positives = 156/267 (58%), Gaps = 28/267 (10%)
Query: 479 EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPH 538
E ++++SGK+ LD LL +LK QG RVLI+SQMTR++D+LE+Y ++R + Y RLDG +
Sbjct: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
Query: 539 EEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNP 598
ER D + +F + + F+F+LSTRAGGLGINL +AD VI YDSDWNP
Sbjct: 1154 SERRD--MVADFQNRNDI-----------FVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1200
Query: 599 QVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN 658
VD QAMDRAHR+GQ K V V+RLI T+EERI++RA+ K + +VI G + +
Sbjct: 1201 TVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF---KPD 1257
Query: 659 KLAKEEMLQMI---RHGATHVFASKESELTDEDITTILER---------GEKKTAEMNER 706
L +E++ ++ + +E + E+ + ER +KK E++ +
Sbjct: 1258 TLKPKEVVSLLLDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGK 1317
Query: 707 LQKMGESSLRNFRMDIEQSLYKFEGED 733
+K G + + F + S +G+D
Sbjct: 1318 RRKEGVNLVIPFVPSADNSNLSADGDD 1344
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,009,701
Number of Sequences: 37866
Number of extensions: 1859956
Number of successful extensions: 9058
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 8322
Number of HSP's gapped (non-prelim): 632
length of query: 1054
length of database: 18,247,518
effective HSP length: 113
effective length of query: 941
effective length of database: 13,968,660
effective search space: 13144509060
effective search space used: 13144509060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.