Guide to the Human Genome
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Name: LOC202051 Sequence: fasta or formatted (205aa) NCBI GI: 210147558
Description:

hypothetical protein LOC202051

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         14           2
 C cysteine            1.0          2           1
 D aspartate           3.4          7           1
 E glutamate          12.7         26           3
 F phenylalanine       2.9          6           1
 G glycine             2.9          6           1
 H histidine           3.4          7           1
 I isoleucine          5.4         11           2
 K lysine             13.2         27           2
 L leucine            10.2         21           2
 M methionine          2.0          4           1
 N asparagine          2.9          6           1
 P proline             1.0          2           1
 Q glutamine          10.7         22           2
 R arginine            3.4          7           1
 S serine              8.3         17           2
 T threonine           2.0          4           1
 V valine              6.8         14           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC202051 
CEP250                0.073   centrosomal protein 2 
PLEKHH2               0.065   pleckstrin homology domain containing, family H (wi...
CCDC147               0.065   coiled-coil domain containing 147 
LOC283767             0.062   golgi autoantigen, golgin subfamily a-like 
CCDC41                0.059   NY-REN-58 antigen 
CCDC41                0.059   NY-REN-58 antigen 
CCDC18                0.059   sarcoma antigen NY-SAR-41 
LOC645202             0.059   PREDICTED: hypothetical protein LOC645202 
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.057   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
WDR87                 0.057   NYD-SP11 protein 
KIF21A                0.057   kinesin family member 21A 
CTAGE1                0.054   cutaneous T-cell lymphoma-associated antigen 1 isofo...
INCENP                0.054   inner centromere protein antigens 135/155kDa isofor...
LOC440243             0.054   PREDICTED: Putative golgin subfamily A member 6-lik...
PLEC1                 0.054   plectin 1 isoform 11 
PLEC1                 0.054   plectin 1 isoform 10 
PLEC1                 0.054   plectin 1 isoform 8 
PLEC1                 0.054   plectin 1 isoform 7 
PLEC1                 0.054   plectin 1 isoform 6 
PLEC1                 0.054   plectin 1 isoform 3 
PLEC1                 0.054   plectin 1 isoform 2 
PLEC1                 0.054   plectin 1 isoform 1 
CCDC30                0.051   coiled-coil domain containing 30 
INCENP                0.051   inner centromere protein antigens 135/155kDa isofor...
LOC727832             0.051   golgi autoantigen, golgin subfamily a-like 
TSC1                  0.051   tuberous sclerosis 1 protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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