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Search of human proteins with 209693464
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209693464 ubiquitin related modifier 1 homolog isoform b
[Homo sapiens]
(146 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209693464 ubiquitin related modifier 1 homolog isoform b [Hom... 307 2e-84
gi|13569870 ubiquitin related modifier 1 homolog isoform a [Homo... 163 4e-41
gi|157311635 FAM83H [Homo sapiens] 32 0.15
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 32 0.19
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 32 0.19
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 32 0.19
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 32 0.19
gi|169217399 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|89061367 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239752226 PREDICTED: hypothetical protein XP_002348164 [Homo ... 32 0.19
gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo ... 32 0.19
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 32 0.19
gi|239755222 PREDICTED: hypothetical protein [Homo sapiens] 31 0.33
gi|239749727 PREDICTED: hypothetical protein XP_002347153 [Homo ... 31 0.33
gi|239743982 PREDICTED: hypothetical protein XP_002343001 [Homo ... 31 0.33
gi|24041035 notch 2 preproprotein [Homo sapiens] 30 0.56
gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 30 0.56
gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 30 0.56
gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 30 0.56
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 30 0.73
gi|23510413 sorting nexin 26 [Homo sapiens] 30 0.73
gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens] 30 0.73
gi|33356179 transcription termination factor, RNA polymerase I [... 29 1.2
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 29 1.2
gi|13027606 mitochondrial ribosomal protein L34 [Homo sapiens] 29 1.2
gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo sa... 29 1.6
gi|157739940 nudix (nucleoside diphosphate linked moiety X)-type... 29 1.6
gi|150417989 cyclin K isoform 1 [Homo sapiens] 29 1.6
gi|239755943 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 28 2.1
>gi|209693464 ubiquitin related modifier 1 homolog isoform b [Homo
sapiens]
Length = 146
Score = 307 bits (786), Expect = 2e-84
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60
MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60
Query: 61 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP 120
DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP
Sbjct: 61 DSVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSP 120
Query: 121 TLRLLESPTPGEEGMGSWGHGSTPPS 146
TLRLLESPTPGEEGMGSWGHGSTPPS
Sbjct: 121 TLRLLESPTPGEEGMGSWGHGSTPPS 146
>gi|13569870 ubiquitin related modifier 1 homolog isoform a [Homo
sapiens]
Length = 101
Score = 163 bits (413), Expect = 4e-41
Identities = 79/79 (100%), Positives = 79/79 (100%)
Query: 1 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60
MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60
Query: 61 DSVRPGILVLINDADWELL 79
DSVRPGILVLINDADWELL
Sbjct: 61 DSVRPGILVLINDADWELL 79
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 32.3 bits (72), Expect = 0.15
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 66 GILVLINDADWELLVSTLGDIPPPAPALA-----ASVGKRWASPQAHIEWLGNPPPHSSP 120
G LV D ++ +L + + P A ALA A A P + +G P P S P
Sbjct: 264 GELVSSFDEEFRILFAQSEPLVPSAAALARMDAYALAPYAGAGPLVGVPGVGAPTPFSFP 323
Query: 121 TLRLLESPTPGEEGMG 136
L P P EEG+G
Sbjct: 324 KRAHLLFPPPREEGLG 339
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 32.0 bits (71), Expect = 0.19
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 114 PPPHSSPTLRLLESPTPGEEGMGS 137
P P+ SPTLR +E+P G GMGS
Sbjct: 448 PVPNPSPTLRPVETPVVGAPGMGS 471
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 32.0 bits (71), Expect = 0.19
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 114 PPPHSSPTLRLLESPTPGEEGMGS 137
P P+ SPTLR +E+P G GMGS
Sbjct: 475 PVPNPSPTLRPVETPVVGAPGMGS 498
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 32.0 bits (71), Expect = 0.19
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 114 PPPHSSPTLRLLESPTPGEEGMGS 137
P P+ SPTLR +E+P G GMGS
Sbjct: 454 PVPNPSPTLRPVETPVVGAPGMGS 477
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 32.0 bits (71), Expect = 0.19
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 114 PPPHSSPTLRLLESPTPGEEGMGS 137
P P+ SPTLR +E+P G GMGS
Sbjct: 454 PVPNPSPTLRPVETPVVGAPGMGS 477
>gi|169217399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 32.0 bits (71), Expect = 0.19
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 105 QAHIEWLGNPPPHSSPTLRLLESPTP 130
Q+H W+G HSSP RLL TP
Sbjct: 12 QSHAAWIGTTLSHSSPAARLLSPSTP 37
>gi|89061367 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 32.0 bits (71), Expect = 0.19
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 105 QAHIEWLGNPPPHSSPTLRLLESPTP 130
Q+H W+G HSSP RLL TP
Sbjct: 12 QSHAAWIGTTLSHSSPAARLLSPSTP 37
>gi|239752226 PREDICTED: hypothetical protein XP_002348164 [Homo
sapiens]
Length = 661
Score = 32.0 bits (71), Expect = 0.19
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 62 SVRPGILVLINDADWELLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSPT 121
S RP + A W L L PPP P +A G W P A PPP +
Sbjct: 260 SSRPPTPTTCDPAAWCPLDKELSP-PPPHPPVALQPGALWTRPVA-----AQPPPAACQA 313
Query: 122 LRLLESPTPGEEGMGS---WGHGSTP 144
R E P + GS GH S P
Sbjct: 314 PRSQEESVPCCDEAGSSYLQGHQSLP 339
>gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo
sapiens]
Length = 160
Score = 32.0 bits (71), Expect = 0.19
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 105 QAHIEWLGNPPPHSSPTLRLLESPTP 130
Q+H W+G HSSP RLL TP
Sbjct: 12 QSHAAWIGTTLSHSSPAARLLSPSTP 37
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 32.0 bits (71), Expect = 0.19
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 84 GDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSPTLRLLESPTPGEEGMGSWGHGST 143
G PPAP+ AA V R + G PPP ESP PG G GS G G
Sbjct: 725 GPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPPPPGHAPAPESPRPG-SGSGS-GPGLA 782
Query: 144 P 144
P
Sbjct: 783 P 783
>gi|239755222 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 31.2 bits (69), Expect = 0.33
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 87 PPPAPALAASVGK-RWA--SPQAHIEWLGNPPPHSSPTLR 123
PPPA ++ W SP AH+ W G P H++P LR
Sbjct: 45 PPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLR 84
>gi|239749727 PREDICTED: hypothetical protein XP_002347153 [Homo
sapiens]
Length = 136
Score = 31.2 bits (69), Expect = 0.33
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 87 PPPAPALAASVGK-RWA--SPQAHIEWLGNPPPHSSPTLR 123
PPPA ++ W SP AH+ W G P H++P LR
Sbjct: 45 PPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLR 84
>gi|239743982 PREDICTED: hypothetical protein XP_002343001 [Homo
sapiens]
Length = 136
Score = 31.2 bits (69), Expect = 0.33
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 87 PPPAPALAASVGK-RWA--SPQAHIEWLGNPPPHSSPTLR 123
PPPA ++ W SP AH+ W G P H++P LR
Sbjct: 45 PPPAVGGGIAISLVTWLPRSPAAHLPWRGQLPGHATPQLR 84
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 30.4 bits (67), Expect = 0.56
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 103 SPQAHIEWLGNPPPHSSPTLRLLESPTPGEEGMGSWG---HGSTPP 145
SP++ +W + P +S + SPTPG G G G H S PP
Sbjct: 2418 SPESPDQWSSSSPHSASDWSDVTTSPTPGGAGGGQRGPGTHMSEPP 2463
>gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform 3
[Homo sapiens]
Length = 462
Score = 30.4 bits (67), Expect = 0.56
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 65 PGILVLINDADWELLVSTLGDIP-PPAPALAASVGKRWASPQAHIEWLGNPPPHSSPTLR 123
P +L N L + L P PP P L++S G P H + L PPP P L
Sbjct: 210 PSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLA 269
Query: 124 LLESPTPG 131
+ P PG
Sbjct: 270 V---PPPG 274
>gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform 2
[Homo sapiens]
Length = 471
Score = 30.4 bits (67), Expect = 0.56
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 65 PGILVLINDADWELLVSTLGDIP-PPAPALAASVGKRWASPQAHIEWLGNPPPHSSPTLR 123
P +L N L + L P PP P L++S G P H + L PPP P L
Sbjct: 219 PSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLA 278
Query: 124 LLESPTPG 131
+ P PG
Sbjct: 279 V---PPPG 283
>gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform 1
[Homo sapiens]
Length = 514
Score = 30.4 bits (67), Expect = 0.56
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 65 PGILVLINDADWELLVSTLGDIP-PPAPALAASVGKRWASPQAHIEWLGNPPPHSSPTLR 123
P +L N L + L P PP P L++S G P H + L PPP P L
Sbjct: 262 PSVLPYFNRPPSALPLMGLPPPPIPPPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLA 321
Query: 124 LLESPTPG 131
+ P PG
Sbjct: 322 V---PPPG 326
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 30.0 bits (66), Expect = 0.73
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 78 LLVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSPTL---RLLESPTPGEEG 134
LLV L PP P + Q H LG PH + R+L SP ++G
Sbjct: 3785 LLVQQLSPQPPQGPQGMLGPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSSPQLAQQG 3844
Query: 135 MGSWGH 140
G GH
Sbjct: 3845 QGLMGH 3850
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 30.0 bits (66), Expect = 0.73
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 84 GDIPPPAP-------ALA-ASVGKRWASPQAHIEWLGNPPPHSSPTLRLLESPTPGEEGM 135
G PPP P ALA A ++ A Q+ E G PP SP R L GE +
Sbjct: 725 GGAPPPPPKNPARLMALALAERAQQVAEQQSQQECGGTPPASQSPFHRSLSLEVGGEP-L 783
Query: 136 GSWGHGSTPPS 146
G+ G G P S
Sbjct: 784 GTSGSGPPPNS 794
>gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]
Length = 431
Score = 30.0 bits (66), Expect = 0.73
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 77 ELLVSTLGDIPPPAPALAASVGKRWASPQAHIEW------LGNPPPHSS-----PTLRLL 125
E +V+ +PP A + A+S WAS Q H ++ + PPP SS P + +
Sbjct: 61 ECVVTVTNPLPPTATS-ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTV 119
Query: 126 ESPTPGEEGMGSWGHGSTPP 145
P GE G STPP
Sbjct: 120 FLPHRGERGQCIL---STPP 136
>gi|33356179 transcription termination factor, RNA polymerase I
[Homo sapiens]
Length = 905
Score = 29.3 bits (64), Expect = 1.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 72 NDADWELLVSTLGDIPP 88
N+ DWE L S +GD+PP
Sbjct: 781 NEIDWEDLASAIGDVPP 797
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 29.3 bits (64), Expect = 1.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 112 GNPPPHSSPTLRLLESPTPGEEGMGSWGHGSTP 144
G+P P +SP P EEG+ WG GS P
Sbjct: 325 GSPEPPTSPR-------APREEGLREWGSGSPP 350
>gi|13027606 mitochondrial ribosomal protein L34 [Homo sapiens]
Length = 92
Score = 29.3 bits (64), Expect = 1.2
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 84 GDIPPPAPALAASVGKRWASPQAHIEWLGNPPPHSSPTLRLLESPTPGEE 133
G + P AA +G RW P+A WLG P PT + G E
Sbjct: 6 GSLLGPTSRSAALLGGRWLQPRA---WLGFPDAWGLPTPQQARGKARGNE 52
>gi|7662234 rab11-family interacting protein 3 isoform 1 [Homo
sapiens]
Length = 756
Score = 28.9 bits (63), Expect = 1.6
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 89 PAPALAASVGKRW-ASPQAHIE------WLGNPPPHSSPTLRLLESPTPG 131
PAP AA G RW A P +E PPP S P +L PG
Sbjct: 58 PAPGAAADGGARWSAGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPG 107
>gi|157739940 nudix (nucleoside diphosphate linked moiety X)-type
motif 19 [Homo sapiens]
Length = 375
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 75 DWELLVSTLGDIPPPAPALAASVGKRWASPQAHIE-------WLGNPPPHSSPTLRL 124
D + L + PP P LA VG +W+SP E WL PPP RL
Sbjct: 213 DTAFFLCCLREPPPVYPDLAEVVGYQWSSPSEATESFLSKEIWL--PPPQFYEVRRL 267
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 28.9 bits (63), Expect = 1.6
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 79 LVSTLGDIPPPAPALAASVGKRWASPQAHIEWLGNPPP 116
L + LG+ PP P A + K P AH + PPP
Sbjct: 378 LAAALGEAEPPGPVDATDLPKVQIPPPAHPAPVHQPPP 415
>gi|239755943 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 28.5 bits (62), Expect = 2.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 86 IPPPAPALAASVG-KRWASPQAHIEWLGNPPPHSSP 120
+PP AP AA+ G KR PQA WL P + P
Sbjct: 1 MPPRAPERAAAGGGKRRGRPQAGARWLSPQPGPARP 36
>gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo
sapiens]
Length = 1074
Score = 28.5 bits (62), Expect = 2.1
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 89 PAPALAASVGKRWASPQAHIEWLGNPPPHSS-PTLRLLESPTPGEEGMGSWGHGSTP 144
P P +S G WASPQ P P S P R G++G G WG G TP
Sbjct: 279 PQPRRPSSQG--WASPQVAGR---RPDPFPSVPRGR-------GQQGQGPWGTGGTP 323
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,083,402
Number of Sequences: 37866
Number of extensions: 454633
Number of successful extensions: 1323
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1278
Number of HSP's gapped (non-prelim): 100
length of query: 146
length of database: 18,247,518
effective HSP length: 92
effective length of query: 54
effective length of database: 14,763,846
effective search space: 797247684
effective search space used: 797247684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.