Guide to the Human Genome
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Name: LOC100293504 Sequence: fasta or formatted (136aa) NCBI GI: 239755222
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         16           2
 C cysteine            0.7          1           1
 D aspartate           2.9          4           1
 E glutamate           0.0          0           0
 F phenylalanine       5.9          8           1
 G glycine            12.5         17           3
 H histidine           2.2          3           1
 I isoleucine          2.9          4           1
 K lysine              4.4          6           1
 L leucine             8.1         11           1
 M methionine          1.5          2           1
 N asparagine          2.2          3           1
 P proline             8.1         11           3
 Q glutamine           6.6          9           2
 R arginine           11.8         16           3
 S serine              4.4          6           2
 T threonine           5.1          7           2
 V valine              6.6          9           1
 W tryptophan          2.2          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291044          1.000   PREDICTED: hypothetical protein XP_002347153 
LOC100287172          1.000   PREDICTED: hypothetical protein XP_002343001 
LOC100131354          0.023   PREDICTED: hypothetical protein 
URM1                  0.023   ubiquitin related modifier 1 homolog isoform b [Hom...
BAHCC1                0.023   BAH domain and coiled-coil containing 1 
LOC100131354          0.020   PREDICTED: hypothetical protein 
NLRX1                 0.020   NLR family member X1 isoform 2 
LOC643355             0.016   PREDICTED: hypothetical protein 
LOC643355             0.016   PREDICTED: hypothetical protein 
MESP1                 0.016   mesoderm posterior 1 
LOC100289723          0.012   PREDICTED: hypothetical protein XP_002346408 
TLE3                  0.012   transducin-like enhancer protein 3 isoform b 
TLE3                  0.012   transducin-like enhancer protein 3 isoform c 
TLE3                  0.012   transducin-like enhancer protein 3 isoform a 
NACA                  0.012   nascent polypeptide-associated complex alpha subuni...
LOC100293818          0.012   PREDICTED: hypothetical protein 
LOC100290009          0.012   PREDICTED: hypothetical protein XP_002346608 
LOC645321             0.008   PREDICTED: hypothetical protein 
WDR90                 0.008   WD repeat domain 90 
NLRP1                 0.008   NLR family, pyrin domain containing 1 isoform 2 [Homo...
NLRP1                 0.008   NLR family, pyrin domain containing 1 isoform 4 [Hom...
NLRP1                 0.008   NLR family, pyrin domain containing 1 isoform 5 [Hom...
NLRP1                 0.008   NLR family, pyrin domain containing 1 isoform 3 [Hom...
NLRP1                 0.008   NLR family, pyrin domain containing 1 isoform 1 [Hom...
ZNF828                0.008   zinc finger protein 828 
TMEM149               0.008   transmembrane protein 149 
AGAP2                 0.008   centaurin, gamma 1 isoform PIKE-L 
B4GALNT4              0.008   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
RBM12                 0.008   RNA binding motif protein 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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