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Search of human proteins with 208022698
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208022698 retinoblastoma protein-binding zinc finger protein
isoform d [Homo sapiens]
(226 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208022698 retinoblastoma protein-binding zinc finger protein ... 471 e-133
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 356 1e-98
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 356 1e-98
gi|147905620 PR domain containing 9 [Homo sapiens] 89 2e-18
gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens] 86 3e-17
gi|210031233 PR domain containing 6 [Homo sapiens] 80 1e-15
gi|172072684 PR domain containing 1, with ZNF domain isoform 1 [... 79 3e-15
gi|15042949 PR domain containing 12 [Homo sapiens] 75 3e-14
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 75 6e-14
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 75 6e-14
gi|41349476 PR domain containing 5 [Homo sapiens] 74 1e-13
gi|13375636 PR domain containing 14 [Homo sapiens] 69 4e-12
gi|157364947 ecotropic viral integration site 1 isoform a [Homo ... 67 1e-11
gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo ... 62 3e-10
gi|41349466 PR domain containing 11 [Homo sapiens] 62 3e-10
gi|41349474 PR domain containing 4 [Homo sapiens] 62 4e-10
gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [H... 59 4e-09
gi|94536868 PR domain containing 15 isoform 2 [Homo sapiens] 59 4e-09
gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens] 59 4e-09
gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens] 50 2e-06
gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens] 50 2e-06
gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens] 50 2e-06
gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens] 50 2e-06
gi|13376064 zinc finger protein 408 [Homo sapiens] 48 6e-06
gi|4826828 myelodysplasia syndrome protein 1 [Homo sapiens] 47 2e-05
gi|150378478 PR domain containing 8 [Homo sapiens] 45 7e-05
gi|150378439 PR domain containing 8 [Homo sapiens] 45 7e-05
gi|41349478 PR domain containing 7 isoform 2 [Homo sapiens] 43 2e-04
gi|124107614 PR domain containing 13 [Homo sapiens] 38 0.008
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 34 0.089
>gi|208022698 retinoblastoma protein-binding zinc finger protein
isoform d [Homo sapiens]
Length = 226
Score = 471 bits (1212), Expect = e-133
Identities = 226/226 (100%), Positives = 226/226 (100%)
Query: 1 MNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFV 60
MNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFV
Sbjct: 1 MNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFV 60
Query: 61 GDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR 120
GDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR
Sbjct: 61 GDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR 120
Query: 121 AIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRKATASAWRPDA 180
AIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRKATASAWRPDA
Sbjct: 121 AIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRKATASAWRPDA 180
Query: 181 LHQRPRTSPGSIGRSKLQLQPSSRDHSSKSRHSGCSLTAPEVTWNQ 226
LHQRPRTSPGSIGRSKLQLQPSSRDHSSKSRHSGCSLTAPEVTWNQ
Sbjct: 181 LHQRPRTSPGSIGRSKLQLQPSSRDHSSKSRHSGCSLTAPEVTWNQ 226
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 356 bits (913), Expect = 1e-98
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFV 60
MNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFV
Sbjct: 1 MNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFV 60
Query: 61 GDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR 120
GDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR
Sbjct: 61 GDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR 120
Query: 121 AIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRK 170
AIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRK
Sbjct: 121 AIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRK 170
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 356 bits (913), Expect = 1e-98
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFV 60
MNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFV
Sbjct: 1 MNQNTTEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFV 60
Query: 61 GDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR 120
GDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR
Sbjct: 61 GDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR 120
Query: 121 AIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRK 170
AIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRK
Sbjct: 121 AIYYKTLKPIAPGEELLVWYNGEDNPEIAAAIEEERASARSKRSSPKSRK 170
>gi|147905620 PR domain containing 9 [Homo sapiens]
Length = 894
Score = 89.4 bits (220), Expect = 2e-18
Identities = 48/131 (36%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 19 PEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILK-GKKFGPFVGDKKKRSQVKNNVYMWE 77
P LP +R+ PS + + +GVW L G FGP+ G + + NN Y W
Sbjct: 235 PNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANNGYSWL 294
Query: 78 VYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELL 137
+ + +D D NW+RYVN A EEQNL + +R I+Y+T + I PG ELL
Sbjct: 295 ITKGRNCYEYVDGKDKSWANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELL 354
Query: 138 VWYNGEDNPEI 148
VWY E E+
Sbjct: 355 VWYGDEYGQEL 365
>gi|148271100 PR domain containing 7 isoform 1 [Homo sapiens]
Length = 492
Score = 85.5 bits (210), Expect = 3e-17
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 19 PEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILK-GKKFGPFVGDKKKRSQVKNNVYMWE 77
P LP +R+ PS + + +GVW L G FGP+ G + + N+ Y W
Sbjct: 235 PNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWL 294
Query: 78 VYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELL 137
+ + +D D NW+RYVN A EEQNL + +R I+Y+T + I PG ELL
Sbjct: 295 ITKGRNCYEYVDGKDKSSANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPGCELL 354
Query: 138 VWYNGEDNPEIAAAIEEERASA 159
VW E E+ E A +
Sbjct: 355 VWSGDEYGQELGIRSSIEPAES 376
>gi|210031233 PR domain containing 6 [Homo sapiens]
Length = 595
Score = 80.5 bits (197), Expect = 1e-15
Identities = 53/143 (37%), Positives = 73/143 (51%), Gaps = 9/143 (6%)
Query: 6 TEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVG---- 61
T AA E+PE LR LP EV L S V G+ A + I +G GPF G
Sbjct: 225 TSSAAAAAPPPELPEW-LRDLPREVCLCTSTVPGLAYGICAAQRIQQGTWIGPFQGVLLP 283
Query: 62 -DKKKRSQVKNNVYMWEVYYPNLGWM--CIDATDPEKGNWLRYVNWACSGEEQNLFPLEI 118
+K + V+N ++WE+Y + G + ID +P K +W+RY+ A EQNL ++
Sbjct: 284 PEKVQAGAVRNTQHLWEIYDQD-GTLQHFIDGGEPSKSSWMRYIRCARHCGEQNLTVVQY 342
Query: 119 NRAIYYKTLKPIAPGEELLVWYN 141
I+Y+ I G ELLVWYN
Sbjct: 343 RSNIFYRACIDIPRGTELLVWYN 365
>gi|172072684 PR domain containing 1, with ZNF domain isoform 1
[Homo sapiens]
Length = 825
Score = 79.0 bits (193), Expect = 3e-15
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 42 IGVWATKPILKGKKFGPFVGDKKKRSQVKNNV---YMWEVYYPNLGWMCIDATDPEKGNW 98
IGV + + I KG +FGP +G+ V N Y W +Y ID + EK NW
Sbjct: 99 IGVMSKEYIPKGTRFGPLIGEIYTNDTVPKNANRKYFWRIYSRGELHHFIDGFNEEKSNW 158
Query: 99 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWY 140
+RYVN A S EQNL + IY+ T+KPI +ELLVWY
Sbjct: 159 MRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWY 200
>gi|15042949 PR domain containing 12 [Homo sapiens]
Length = 367
Score = 75.5 bits (184), Expect = 3e-14
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 6 TEPVAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKK 65
T V A EV + LP EV + S++ +G+++ I G + GPF G
Sbjct: 64 TAEVLAQSFSGEVQKLSSLVLPAEVIIAQSSIPGEGLGIFSKTWIKAGTEMGPFTGRVIA 123
Query: 66 RSQV---KNNVYMWEVYYPNLGWM--CIDATDPEKGNWLRYVNWACSGEEQNLFPLEINR 120
V KNN MWEV+ + G + IDA+ + +W+ Y+ A + +EQNL ++I
Sbjct: 124 PEHVDICKNNNLMWEVFNED-GTVRYFIDASQEDHRSWMTYIKCARNEQEQNLEVVQIGT 182
Query: 121 AIYYKTLKPIAPGEELLVWYNGEDN 145
+I+YK ++ I P +ELLVWY N
Sbjct: 183 SIFYKAIEMIPPDQELLVWYGNSHN 207
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 74.7 bits (182), Expect = 6e-14
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 22/139 (15%)
Query: 18 VPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWE 77
+PE + +P + L S++ +GVWA + + G++ GP V R+ K + WE
Sbjct: 74 IPEDI--PIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCV--VVPRAAAKETDFGWE 129
Query: 78 VYY------PNLGWM------------CIDATDPEKGNWLRYVNWACSGEEQNLFPLEIN 119
P G + C+DA G+WL+Y+ ACS ++QNL +I+
Sbjct: 130 QILTDVEVSPQEGCITKISEDLGSEKFCVDANQAGAGSWLKYIRVACSCDDQNLTMCQIS 189
Query: 120 RAIYYKTLKPIAPGEELLV 138
IYYK +K I PGEELLV
Sbjct: 190 EQIYYKVIKDIEPGEELLV 208
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 74.7 bits (182), Expect = 6e-14
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 22/139 (15%)
Query: 18 VPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWE 77
+PE + +P + L S++ +GVWA + + G++ GP V R+ K + WE
Sbjct: 74 IPEDI--PIPADFELRESSIPGAGLGVWAKRKMEAGERLGPCV--VVPRAAAKETDFGWE 129
Query: 78 VYY------PNLGWM------------CIDATDPEKGNWLRYVNWACSGEEQNLFPLEIN 119
P G + C+DA G+WL+Y+ ACS ++QNL +I+
Sbjct: 130 QILTDVEVSPQEGCITKISEDLGSEKFCVDANQAGAGSWLKYIRVACSCDDQNLTMCQIS 189
Query: 120 RAIYYKTLKPIAPGEELLV 138
IYYK +K I PGEELLV
Sbjct: 190 EQIYYKVIKDIEPGEELLV 208
>gi|41349476 PR domain containing 5 [Homo sapiens]
Length = 630
Score = 73.6 bits (179), Expect = 1e-13
Identities = 50/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 26 LPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNV---YMWEVYYPN 82
+P+ L S V + +G++ + + KG+KFGPF G+K+ + N+ MWEV
Sbjct: 6 VPDRFSLKSSRV-QDGMGLYTARRVRKGEKFGPFAGEKRMPEDLDENMDYRLMWEVRGSK 64
Query: 83 LGWMCI-DATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYN 141
+ I DAT+P NWLR+V+ A S E++NL ++ I+Y ++ I ELL+ Y
Sbjct: 65 GEVLYILDATNPRHSNWLRFVHEAPSQEQKNLAAIQEGENIFYLAVEDIETDTELLIGYL 124
Query: 142 GEDNPEIAAAIEEERASARSKRSSPKSRKATASAWRPDAL 181
D + A EE++ K ++ + ++A R D L
Sbjct: 125 DSD---MEAEEEEQQIMTVIKEGEVENSRRQSTAGRKDRL 161
>gi|13375636 PR domain containing 14 [Homo sapiens]
Length = 571
Score = 68.6 bits (166), Expect = 4e-12
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 26 LPEEVRLFPSAVDKT-RIGVWATKPILKGKKFGPFVGDKKKRSQVK---NNVYMWEVYYP 81
LPE + L + + GV+ + I KG +FGPF G S+VK +N MWE++
Sbjct: 249 LPEGLCLMQTVFGEVPHFGVFCSSFIAKGVRFGPFQGKVVNASEVKTYGDNSVMWEIFED 308
Query: 82 NLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWY 140
ID GNW+ YVN A +EQNL ++ I+Y++ K I +ELLVWY
Sbjct: 309 GHLSHFIDGKGGT-GNWMSYVNCARFPKEQNLVAVQCQGHIFYESCKEIHQNQELLVWY 366
>gi|157364947 ecotropic viral integration site 1 isoform a [Homo
sapiens]
Length = 1115
Score = 67.0 bits (162), Expect = 1e-11
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 87 CIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNP 146
CIDA+ P+ G+WL+Y+ +A ++ NL +IN I+Y+ + IAPGEELL++ ED P
Sbjct: 12 CIDASQPDVGSWLKYIRFAGCYDQHNLVACQINDQIFYRVVADIAPGEELLLFMKSEDYP 71
Query: 147 E--IAAAIEEER 156
+A I EER
Sbjct: 72 HETMAPDIHEER 83
>gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo
sapiens]
Length = 1158
Score = 62.4 bits (150), Expect = 3e-10
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 87 CIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLV 138
C+DA G+WL+Y+ ACS ++QNL +I+ IYYK +K I PGEELLV
Sbjct: 58 CVDANQAGAGSWLKYIRVACSCDDQNLTMCQISEQIYYKVIKDIEPGEELLV 109
>gi|41349466 PR domain containing 11 [Homo sapiens]
Length = 511
Score = 62.4 bits (150), Expect = 3e-10
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 9 VAATETLAEVPEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQ 68
V+ T +P+ +P+ + + ++ + + I KG FGP+ G + +
Sbjct: 130 VSDTPVPVGIPDRAALTIPQGMEVVKDTSGESDVRC-VNEVIPKGHIFGPYEGQISTQDK 188
Query: 69 VKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLK 128
+ W + N + ID +D K NW+RYV + EQNL + + IY++ +
Sbjct: 189 -SAGFFSWLIVDKNNRYKSIDGSDETKANWMRYVVISREEREQNLLAFQHSERIYFRACR 247
Query: 129 PIAPGEELLVWYN 141
I PGE L VWY+
Sbjct: 248 DIRPGEWLRVWYS 260
>gi|41349474 PR domain containing 4 [Homo sapiens]
Length = 801
Score = 62.0 bits (149), Expect = 4e-10
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 26 LPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQV-----KNNVYMWEVYY 80
LP+++ L S V +GVW + I FGP +G + +V K ++W++Y+
Sbjct: 410 LPKQLVLRQSIVG-AEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYH 468
Query: 81 PNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWY 140
+ CI TD + NW+ +V A + EEQNL + I++ T + I P ELL +Y
Sbjct: 469 NGVLEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYY 528
Query: 141 N 141
+
Sbjct: 529 S 529
>gi|33946274 PR domain containing 1, with ZNF domain isoform 2 [Homo
sapiens]
Length = 691
Score = 58.5 bits (140), Expect = 4e-09
Identities = 28/53 (52%), Positives = 34/53 (64%)
Query: 88 IDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWY 140
ID + EK NW+RYVN A S EQNL + IY+ T+KPI +ELLVWY
Sbjct: 14 IDGFNEEKSNWMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWY 66
>gi|94536868 PR domain containing 15 isoform 2 [Homo sapiens]
Length = 1178
Score = 58.5 bits (140), Expect = 4e-09
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 43 GVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYV 102
GV+A ++K +FGPF + + + K + + +V+ + +C D ++ + NW+ V
Sbjct: 99 GVFAITQLVKRTQFGPFESRRVAKWE-KESAFPLKVFQKDGHPVCFDTSNEDDCNWMMLV 157
Query: 103 NWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWY-----NGEDNPEIAAAIEEERA 157
A E QNL + +Y+ T + I PG EL VWY D P + A A
Sbjct: 158 RPAAEAEHQNLTAYQHGSDVYFTTSRDIPPGTELRVWYAAFYAKKMDKPMLKQAGSGVHA 217
Query: 158 SARSKRSSP 166
+ + S+P
Sbjct: 218 AGTPENSAP 226
>gi|93204879 PR domain containing 15 isoform 1 [Homo sapiens]
Length = 1507
Score = 58.5 bits (140), Expect = 4e-09
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 43 GVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYV 102
GV+A ++K +FGPF + + + K + + +V+ + +C D ++ + NW+ V
Sbjct: 428 GVFAITQLVKRTQFGPFESRRVAKWE-KESAFPLKVFQKDGHPVCFDTSNEDDCNWMMLV 486
Query: 103 NWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWY-----NGEDNPEIAAAIEEERA 157
A E QNL + +Y+ T + I PG EL VWY D P + A A
Sbjct: 487 RPAAEAEHQNLTAYQHGSDVYFTTSRDIPPGTELRVWYAAFYAKKMDKPMLKQAGSGVHA 546
Query: 158 SARSKRSSP 166
+ + S+P
Sbjct: 547 AGTPENSAP 555
>gi|41349460 PR domain containing 10 isoform 2 [Homo sapiens]
Length = 1156
Score = 50.1 bits (118), Expect = 2e-06
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 37 VDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYPNLGW--------MCI 88
+D+ GV++ + I K +FGP G + S++K+ +V +
Sbjct: 214 IDRFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWF 273
Query: 89 DATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGE----D 144
+ +D NW+ +V A + EQNL + +YY T+K + P +EL VWY
Sbjct: 274 ELSDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFV 333
Query: 145 NPEIAAAIEEERASARSKRSS 165
N +I EEER R + +
Sbjct: 334 NQKIHDISEEERKVLREQEKN 354
>gi|41349464 PR domain containing 10 isoform 4 [Homo sapiens]
Length = 1023
Score = 50.1 bits (118), Expect = 2e-06
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 37 VDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYPNLGW--------MCI 88
+D+ GV++ + I K +FGP G + S++K+ +V +
Sbjct: 128 IDRFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWF 187
Query: 89 DATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGE----D 144
+ +D NW+ +V A + EQNL + +YY T+K + P +EL VWY
Sbjct: 188 ELSDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFV 247
Query: 145 NPEIAAAIEEERASARSKRSS 165
N +I EEER R + +
Sbjct: 248 NQKIHDISEEERKVLREQEKN 268
>gi|41349458 PR domain containing 10 isoform 1 [Homo sapiens]
Length = 1160
Score = 50.1 bits (118), Expect = 2e-06
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 37 VDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYPNLGW--------MCI 88
+D+ GV++ + I K +FGP G + S++K+ +V +
Sbjct: 214 IDRFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWF 273
Query: 89 DATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGE----D 144
+ +D NW+ +V A + EQNL + +YY T+K + P +EL VWY
Sbjct: 274 ELSDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFV 333
Query: 145 NPEIAAAIEEERASARSKRSS 165
N +I EEER R + +
Sbjct: 334 NQKIHDISEEERKVLREQEKN 354
>gi|41349462 PR domain containing 10 isoform 3 [Homo sapiens]
Length = 1061
Score = 50.1 bits (118), Expect = 2e-06
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 37 VDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYPNLGW--------MCI 88
+D+ GV++ + I K +FGP G + S++K+ +V +
Sbjct: 128 IDRFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDRKERDLHEDLWF 187
Query: 89 DATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGE----D 144
+ +D NW+ +V A + EQNL + +YY T+K + P +EL VWY
Sbjct: 188 ELSDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFV 247
Query: 145 NPEIAAAIEEERASARSKRSS 165
N +I EEER R + +
Sbjct: 248 NQKIHDISEEERKVLREQEKN 268
>gi|13376064 zinc finger protein 408 [Homo sapiens]
Length = 720
Score = 48.1 bits (113), Expect = 6e-06
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 23/201 (11%)
Query: 12 TETLAEVPEH------VLRGLPEEVRLFPSAVDKTRIGVWAT-KPILKGKKFGPFVGDKK 64
T+ L +VP L+ LP + L PS + R+GVW P+ G +GP +
Sbjct: 37 TQGLKDVPPEPTRDILALKSLPRGLALGPSLAKEQRLGVWCVGDPLQPGLLWGPLEEESA 96
Query: 65 KRSQVKNNVYMWEVYYPNLGWMCIDATDPEKGNWLRYVNWACSGEEQNLFPLEINRAIYY 124
+ + + E W + A + G W V E N+ P+ I+ ++
Sbjct: 97 SKEKGEGVKPRQEENLSLGPWGDVCACEQSSG-WTSLVQRGRLESEGNVAPVRISERLHL 155
Query: 125 KTLKPIAPGEELLVW-----------YNGEDNPEIAAAIEEERASARSKRSSPKSRKA-- 171
+ + + PG ELL+W G D A + E ++ + + +SP A
Sbjct: 156 QVYQLVLPGSELLLWPQPSSEGPSLTQPGLDKEAAVAVVTEVESAVQQEVASPGEDAAEP 215
Query: 172 --TASAWRPDALHQRPRTSPG 190
+ P + SPG
Sbjct: 216 CIDPGSQSPSGIQAENMVSPG 236
>gi|4826828 myelodysplasia syndrome protein 1 [Homo sapiens]
Length = 169
Score = 46.6 bits (109), Expect = 2e-05
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 26 LPEEVRLFPSAVDKTRIGVWATKPILKGKKFGPFVGDKKKRSQVKNNVYMWEVYYP 81
+P E L S + +G+W + I G+KFGP+VG+ +RS +K+ Y WEV+ P
Sbjct: 76 IPAEFELRESNMPGAGLGIWTKRKIEVGEKFGPYVGE--QRSNLKDPSYGWEVHLP 129
>gi|150378478 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 44.7 bits (104), Expect = 7e-05
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 98 WLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGE 143
WLR V A EEQNL N ++Y++L+ IA EELLVWY E
Sbjct: 88 WLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRIAKDEELLVWYGKE 133
>gi|150378439 PR domain containing 8 [Homo sapiens]
Length = 689
Score = 44.7 bits (104), Expect = 7e-05
Identities = 23/46 (50%), Positives = 28/46 (60%)
Query: 98 WLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGE 143
WLR V A EEQNL N ++Y++L+ IA EELLVWY E
Sbjct: 88 WLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRIAKDEELLVWYGKE 133
>gi|41349478 PR domain containing 7 isoform 2 [Homo sapiens]
Length = 171
Score = 43.1 bits (100), Expect = 2e-04
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 19 PEHVLRGLPEEVRLFPSAVDKTRIGVWATKPILK-GKKFGPFVGDKKKRSQVKNNVYMWE 77
P LP +R+ PS + + +GVW L G FGP+ G + + N+ Y W
Sbjct: 29 PNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRITEDEEAANSGYSWL 88
Query: 78 VYYPNLGWMCIDATDPEKGNWLR 100
+ + +D D NW+R
Sbjct: 89 ITKGRNCYEYVDGKDKSSANWMR 111
>gi|124107614 PR domain containing 13 [Homo sapiens]
Length = 707
Score = 37.7 bits (86), Expect = 0.008
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 88 IDATDPEKGNWLRYVNWACSGEEQNLFPLEI--NRAIYYKTLKPIAPGEELLVWYNGE-- 143
+D + W+ + A + +EQ L + I+Y+ L+ + PGEEL VWY+
Sbjct: 57 VDESGGSPLEWIGLIRAARNSQEQTLEAIADLPGGQIFYRALRDVQPGEELTVWYSNSLA 116
Query: 144 ---DNPEIAAAIEEERASAR 160
D P A +E+ R
Sbjct: 117 QWFDIPTTATPTHDEKGEER 136
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 34.3 bits (77), Expect = 0.089
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 158 SARSKRSSPKSRKATASAWRPDALHQRPRTSPGSIGRSKLQLQPSSRDHSSK--SRHSGC 215
S RS SSP+SR ++ + + R R+ S RS+ PSSR HS S HS C
Sbjct: 682 SDRSSESSPRSRSRSSRSRSYSRSYTRSRSLASSHSRSR---SPSSRSHSRNKYSDHSQC 738
Query: 216 S 216
S
Sbjct: 739 S 739
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,974,048
Number of Sequences: 37866
Number of extensions: 462127
Number of successful extensions: 1433
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1341
Number of HSP's gapped (non-prelim): 106
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.