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Search of human proteins with 208022678
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208022678 hypothetical protein LOC374877 [Homo sapiens]
(505 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208022678 hypothetical protein LOC374877 [Homo sapiens] 1084 0.0
gi|15529996 son of sevenless homolog 1 [Homo sapiens] 36 0.072
gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens] 36 0.094
gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens] 36 0.094
gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens] 36 0.094
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 35 0.12
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 35 0.21
gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens] 34 0.27
gi|150417989 cyclin K isoform 1 [Homo sapiens] 34 0.27
gi|169171680 PREDICTED: hypothetical protein [Homo sapiens] 33 0.61
gi|221139926 NHS-like 1 [Homo sapiens] 33 0.79
gi|169204760 PREDICTED: hypothetical protein [Homo sapiens] 32 1.0
gi|169205546 PREDICTED: hypothetical protein [Homo sapiens] 32 1.0
gi|169204158 PREDICTED: hypothetical protein [Homo sapiens] 32 1.0
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 32 1.0
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 32 1.0
gi|115298686 protein inhibitor of activated STAT, 3 [Homo sapiens] 32 1.0
gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens] 32 1.0
gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo sapi... 32 1.4
gi|224494026 tumor necrosis factor receptor superfamily, member ... 32 1.8
gi|224494019 tumor necrosis factor receptor superfamily, member ... 32 1.8
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 32 1.8
gi|217416343 fibrosin-like 1 [Homo sapiens] 32 1.8
gi|60223083 hypothetical protein LOC283726 [Homo sapiens] 32 1.8
gi|19913379 G6B protein isoform G6b-D precursor [Homo sapiens] 31 2.3
gi|146134388 YLP motif containing 1 [Homo sapiens] 31 2.3
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 31 3.0
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 31 3.0
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 31 3.0
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 31 3.0
>gi|208022678 hypothetical protein LOC374877 [Homo sapiens]
Length = 505
Score = 1084 bits (2804), Expect = 0.0
Identities = 505/505 (100%), Positives = 505/505 (100%)
Query: 1 MATGALLPCSRPCPMSRLDFLKASHFSLGPDLRLHEGTMRTTSHRDFAYPAATREPPSLQ 60
MATGALLPCSRPCPMSRLDFLKASHFSLGPDLRLHEGTMRTTSHRDFAYPAATREPPSLQ
Sbjct: 1 MATGALLPCSRPCPMSRLDFLKASHFSLGPDLRLHEGTMRTTSHRDFAYPAATREPPSLQ 60
Query: 61 PPPALLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARERTLAMQAGNLHLHEDAH 120
PPPALLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARERTLAMQAGNLHLHEDAH
Sbjct: 61 PPPALLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARERTLAMQAGNLHLHEDAH 120
Query: 121 AGIGLSNAHAAYGWPELPARTRERIRGARLIFDRDSLPPGDRDKLRIPPTTHQALFPPHD 180
AGIGLSNAHAAYGWPELPARTRERIRGARLIFDRDSLPPGDRDKLRIPPTTHQALFPPHD
Sbjct: 121 AGIGLSNAHAAYGWPELPARTRERIRGARLIFDRDSLPPGDRDKLRIPPTTHQALFPPHD 180
Query: 181 ARPQPRAPSCHLGGPNTLKWDYTRQDGTSYQRQFQALPGPPALRCKRASSGVELGDCKIS 240
ARPQPRAPSCHLGGPNTLKWDYTRQDGTSYQRQFQALPGPPALRCKRASSGVELGDCKIS
Sbjct: 181 ARPQPRAPSCHLGGPNTLKWDYTRQDGTSYQRQFQALPGPPALRCKRASSGVELGDCKIS 240
Query: 241 YGSTCSEQKQAYRPQDLPEDRYDKAQATAHIHCVNIRPGDGLFRDRTTKAEHFYAREPEP 300
YGSTCSEQKQAYRPQDLPEDRYDKAQATAHIHCVNIRPGDGLFRDRTTKAEHFYAREPEP
Sbjct: 241 YGSTCSEQKQAYRPQDLPEDRYDKAQATAHIHCVNIRPGDGLFRDRTTKAEHFYAREPEP 300
Query: 301 FVLHHDQTPESHILKGNWCPGPGSLDTFMQYFYGQPPPPTQPPSRHVPHEKLQSHVTLGE 360
FVLHHDQTPESHILKGNWCPGPGSLDTFMQYFYGQPPPPTQPPSRHVPHEKLQSHVTLGE
Sbjct: 301 FVLHHDQTPESHILKGNWCPGPGSLDTFMQYFYGQPPPPTQPPSRHVPHEKLQSHVTLGE 360
Query: 361 PKLLKRFFKTTMGSDYCPSEWRQVQKAPNLHLQQSYLPRGTGEFDFLTMNQKMLKPHRTP 420
PKLLKRFFKTTMGSDYCPSEWRQVQKAPNLHLQQSYLPRGTGEFDFLTMNQKMLKPHRTP
Sbjct: 361 PKLLKRFFKTTMGSDYCPSEWRQVQKAPNLHLQQSYLPRGTGEFDFLTMNQKMLKPHRTP 420
Query: 421 PAPVTEEMLQRCKYSHMEPPLGGLRFFSTQYKDEFPFKYQGPAALRLKNPQEGFVPLGTP 480
PAPVTEEMLQRCKYSHMEPPLGGLRFFSTQYKDEFPFKYQGPAALRLKNPQEGFVPLGTP
Sbjct: 421 PAPVTEEMLQRCKYSHMEPPLGGLRFFSTQYKDEFPFKYQGPAALRLKNPQEGFVPLGTP 480
Query: 481 HQRGCREKIDPLVPQPPMYLCPSQQ 505
HQRGCREKIDPLVPQPPMYLCPSQQ
Sbjct: 481 HQRGCREKIDPLVPQPPMYLCPSQQ 505
>gi|15529996 son of sevenless homolog 1 [Homo sapiens]
Length = 1333
Score = 36.2 bits (82), Expect = 0.072
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 289 KAEH---FYAREPEPFVLHHDQTPESHILKGNWCPGPGSLDTFMQYFYGQPPPPTQPPSR 345
K++H F+ P PF QTP H + + P + + + G P PP Q S+
Sbjct: 1241 KSDHGNAFFPNSPSPFTPPPPQTPSPHGTRRHLPSPPLTQEVDLHSIAGPPVPPRQSTSQ 1300
Query: 346 HVP 348
H+P
Sbjct: 1301 HIP 1303
>gi|23510389 myotubularin-related protein 3 isoform b [Homo sapiens]
Length = 1161
Score = 35.8 bits (81), Expect = 0.094
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 96 LLQAQARERTLAMQAGNLHLHEDAHAGIGLSNAHAAYGWPELPARTRERIRGARLIFDRD 155
LL+ ++R +T +A + LH+D G +H WP E+ G ++
Sbjct: 722 LLEKESRRKT--PEASAIGLHQDPELGDAALRSHLDMSWPLFSQGISEQQSGLSVLLSSL 779
Query: 156 SLPPGDRDKLRIP 168
+PP D L +P
Sbjct: 780 QVPPRGEDSLEVP 792
>gi|23510387 myotubularin-related protein 3 isoform a [Homo sapiens]
Length = 1170
Score = 35.8 bits (81), Expect = 0.094
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 96 LLQAQARERTLAMQAGNLHLHEDAHAGIGLSNAHAAYGWPELPARTRERIRGARLIFDRD 155
LL+ ++R +T +A + LH+D G +H WP E+ G ++
Sbjct: 722 LLEKESRRKT--PEASAIGLHQDPELGDAALRSHLDMSWPLFSQGISEQQSGLSVLLSSL 779
Query: 156 SLPPGDRDKLRIP 168
+PP D L +P
Sbjct: 780 QVPPRGEDSLEVP 792
>gi|10835109 myotubularin-related protein 3 isoform c [Homo sapiens]
Length = 1198
Score = 35.8 bits (81), Expect = 0.094
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 96 LLQAQARERTLAMQAGNLHLHEDAHAGIGLSNAHAAYGWPELPARTRERIRGARLIFDRD 155
LL+ ++R +T +A + LH+D G +H WP E+ G ++
Sbjct: 722 LLEKESRRKT--PEASAIGLHQDPELGDAALRSHLDMSWPLFSQGISEQQSGLSVLLSSL 779
Query: 156 SLPPGDRDKLRIP 168
+PP D L +P
Sbjct: 780 QVPPRGEDSLEVP 792
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 35.4 bits (80), Expect = 0.12
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 318 WCPGPGSLDTFMQYFYGQPPP-----PTQPPSRHVPHEKLQSHVTLGEPKLLKRFFKTTM 372
+CP D ++ + P P QPPS+ P L S + K + +
Sbjct: 240 YCPAKSPKDLAVKVHDKETPQDSLVAPAQPPSQTFPPPSLPSKSVAMQQKPTA-YVRPMD 298
Query: 373 GSDYCPSEWRQVQKAPNLHLQQSY------LPRGTGEFDFLTMNQKMLKPHRTPPAPVTE 426
G D PSE +++ P + QQ++ +P + L M + ++ + E
Sbjct: 299 GQDQAPSESPELKPLPEDYRQQTFEKTDLKVP-AKAKLTKLKMPSQSVEQTYSNEVHCVE 357
Query: 427 EMLQRCKYSHMEPPLGGLRFFSTQYKDEFPF 457
E+L+ +S PPL + ST +FPF
Sbjct: 358 EILKEMTHS-WPPPLTAIHTPSTAEPSKFPF 387
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 34.7 bits (78), Expect = 0.21
Identities = 48/191 (25%), Positives = 70/191 (36%), Gaps = 29/191 (15%)
Query: 51 AATREPPSLQPPPALLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARERTLAMQA 110
+++ PP PPPA P PR+D + A+ PP P + + + A
Sbjct: 203 SSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPAPEQKYDPFEPTGSNPSSSA 262
Query: 111 G----NLHLHEDAHAGIGLSNAHAAYGWPELPARTRERIRGARLIFDRDSLP---PGDRD 163
G E+ + G + +R E + G I+D +SL PGD
Sbjct: 263 GTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAG---IYDDNSLSQDFPGDES 319
Query: 164 KLRIPPTTHQALFPPHDARPQPRAPSCHLGGPNTLKWDYTRQDGTSYQRQFQALPGPPAL 223
P DA QP P+ G P + D TR DG +R F + G A
Sbjct: 320 -------------PRPDA--QPTQPTPAPGTPPQV--DSTRADGAMRRRVF--VVGTEAE 360
Query: 224 RCKRASSGVEL 234
C+ VE+
Sbjct: 361 ACREGKVSVEV 371
>gi|194248077 Kruppel-like factor 4 (gut) [Homo sapiens]
Length = 479
Score = 34.3 bits (77), Expect = 0.27
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 24/92 (26%)
Query: 121 AGIGLSNAH--AAYGWP---ELPARTRERIRGARLIFDRDS-----LPPG---------- 160
AG LSN H AA+ +P +LP+RT + ++ RD LPPG
Sbjct: 290 AGPPLSNGHRPAAHDFPLGRQLPSRTTPTLGLEEVLSSRDCHPALPLPPGFHPHPGPNYP 349
Query: 161 ----DRDKLRIPPTTHQALFPPHDARPQPRAP 188
D+ + ++PP +Q L PP P+ P
Sbjct: 350 SFLPDQMQPQVPPLHYQELMPPGSCMPEEPKP 381
>gi|150417989 cyclin K isoform 1 [Homo sapiens]
Length = 580
Score = 34.3 bits (77), Expect = 0.27
Identities = 50/205 (24%), Positives = 74/205 (36%), Gaps = 37/205 (18%)
Query: 50 PAATREPPSLQPPPALLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARERTLAMQ 109
P ++PPSLQP P + + + S+ + P P + AQ ++
Sbjct: 270 PHQLQQPPSLQPTPQVPQVQQSQPSQSSEPSQPQQK--DPQQPAQQQQPAQQPKKPSPQP 327
Query: 110 AGNLHLHEDAHAGIGLSNAHAAYGWPELPA--RTRERIRGARLIFDR---------DSLP 158
+ + N A P++P T + A DR ++ P
Sbjct: 328 SSPRQVKRAVVVSPKEENKAAEPPPPKIPKIETTHPPLPPAHPPPDRKPPLAAALGEAEP 387
Query: 159 PG-----DRDKLRIPPTTHQALF---PPHDARPQPRAPSCHLGGPNTLKWDYTRQDGTSY 210
PG D K++IPP H A PP RP P PS ++ G +T + G Y
Sbjct: 388 PGPVDATDLPKVQIPPPAHPAPVHQPPPLPHRPPPPPPSSYMTGMSTTS---SYMSGEGY 444
Query: 211 QR----------QFQALP---GPPA 222
Q + ALP GPPA
Sbjct: 445 QSLQSMMKTEGPSYGALPPAYGPPA 469
>gi|169171680 PREDICTED: hypothetical protein [Homo sapiens]
Length = 226
Score = 33.1 bits (74), Expect = 0.61
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 282 LFRDRTTKAEHFYAREPEPFVLHHDQTPESHILKGNWCPGPGSLDTFMQYFYGQPPPPTQ 341
LFR TKA+ + P P H P+ +C GP + Q G P P
Sbjct: 92 LFRKGLTKADSKETQVPPPPATLHLPHPQ-------FCLGPRPIP---QISPGTPHPAAH 141
Query: 342 PPSRHVPHEKLQSHVTLGEPKLLK 365
PP R PH L+ V G P+ L+
Sbjct: 142 PPERTAPH--LRGPVASGLPRGLR 163
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 32.7 bits (73), Expect = 0.79
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 53 TREPPSLQ---------PPPALLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARE 103
+R+PP + PPP F ++P E VSEA RA P P+T + ++ +
Sbjct: 1189 SRKPPPISKKPKLFLVVPPPQKDFAVEPA----ENVSEALRAVPSPTTGEEGSVHSREAK 1244
Query: 104 RTLAMQAGNLHLH 116
+ A QAG+ H
Sbjct: 1245 ESSAAQAGSHATH 1257
>gi|169204760 PREDICTED: hypothetical protein [Homo sapiens]
Length = 498
Score = 32.3 bits (72), Expect = 1.0
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 52 ATREPPSLQPPPA--------LLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARE 103
ATR PP L P A LL P RE RV A + P + PP ELL A +E
Sbjct: 276 ATRAPPRLGPQEARTPLVAQTLLLPEKVTPPRE-RVEPATKGSGPHTRPPRELLTAAEKE 334
Query: 104 RTL-AMQAGNLHLH 116
A LHLH
Sbjct: 335 SIREAADTRALHLH 348
>gi|169205546 PREDICTED: hypothetical protein [Homo sapiens]
Length = 441
Score = 32.3 bits (72), Expect = 1.0
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 52 ATREPPSLQPPPA--------LLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARE 103
ATR PP L P A LL P RE RV A + P + PP ELL A +E
Sbjct: 219 ATRAPPRLGPQEARTPLVAQTLLLPEKVTPPRE-RVEPATKGSGPHTRPPRELLTAAEKE 277
Query: 104 RTL-AMQAGNLHLH 116
A LHLH
Sbjct: 278 SIREAADTRALHLH 291
>gi|169204158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 498
Score = 32.3 bits (72), Expect = 1.0
Identities = 29/74 (39%), Positives = 32/74 (43%), Gaps = 10/74 (13%)
Query: 52 ATREPPSLQPPPA--------LLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARE 103
ATR PP L P A LL P RE RV A + P + PP ELL A +E
Sbjct: 276 ATRAPPRLGPQEARTPLVAQTLLLPEKVTPPRE-RVEPATKGSGPHTRPPRELLTAAEKE 334
Query: 104 RTL-AMQAGNLHLH 116
A LHLH
Sbjct: 335 SIREAADTRALHLH 348
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 32.3 bits (72), Expect = 1.0
Identities = 70/325 (21%), Positives = 97/325 (29%), Gaps = 72/325 (22%)
Query: 54 REPPSLQPP--PALLFPM----------DPRWDREERVSEAHRAFPPPSTPPWELLQAQA 101
+ PP + P P + P DP+WD SEA + EL Q Q
Sbjct: 1349 KSPPKMSKPGSPGSVIPAQAHGKIFTKPDPQWDSTVSASEAENGVHLKT----ELQQKQL 1404
Query: 102 RERTLAMQAGNLHLHEDAHAGIGLSNAHAAYGWPELPARTRERIRGARLIFDRDSLPPGD 161
A LS H P +T R +L S+P
Sbjct: 1405 SNNNQA-----------------LSKNH--------PPQTHVRNSSEQLSQKLPSVPT-- 1437
Query: 162 RDKLRIPPTTHQALFPPHDARPQ---------PRAPSCHLGGPNTLKWDYTRQDGTSY-- 210
KL PP+ H PP + P P+ PS LG P + Q GT
Sbjct: 1438 --KLHCPPSPHLEN-PPKSSTPHTPVQHGYLSPKPPSQQLGSPYRPHHSQSPQVGTPQRE 1494
Query: 211 -QRQFQALPGPPALRCKRASSG-----VELGDCKISYGSTCSEQKQAYRPQDLP-----E 259
QR F ++A+SG G +Y + + P P
Sbjct: 1495 PQRNFYPAAQNLPANTQQATSGTLFTQTPSGQSSATYSQFNQQSLNSTAPPPPPPPPPSS 1554
Query: 260 DRYDKAQATAHIHCVNIRPGDGLFRDRTTKAEHFYAREPEPFVLHHDQTPESHILKGNWC 319
Y Q +A+ N G + T + + P P H+ G++
Sbjct: 1555 SYYQNQQPSANFQNYNQLKGSLSQQTVFTSGPN----QALPGTTSQQTVPGHHVTPGHFL 1610
Query: 320 PGPGSLDTFMQYFYGQPPPPTQPPS 344
P PPPP PP+
Sbjct: 1611 PSQNPTIHHQTAAAVVPPPPPPPPA 1635
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 32.3 bits (72), Expect = 1.0
Identities = 70/325 (21%), Positives = 97/325 (29%), Gaps = 72/325 (22%)
Query: 54 REPPSLQPP--PALLFPM----------DPRWDREERVSEAHRAFPPPSTPPWELLQAQA 101
+ PP + P P + P DP+WD SEA + EL Q Q
Sbjct: 1349 KSPPKMSKPGSPGSVIPAQAHGKIFTKPDPQWDSTVSASEAENGVHLKT----ELQQKQL 1404
Query: 102 RERTLAMQAGNLHLHEDAHAGIGLSNAHAAYGWPELPARTRERIRGARLIFDRDSLPPGD 161
A LS H P +T R +L S+P
Sbjct: 1405 SNNNQA-----------------LSKNH--------PPQTHVRNSSEQLSQKLPSVPT-- 1437
Query: 162 RDKLRIPPTTHQALFPPHDARPQ---------PRAPSCHLGGPNTLKWDYTRQDGTSY-- 210
KL PP+ H PP + P P+ PS LG P + Q GT
Sbjct: 1438 --KLHCPPSPHLEN-PPKSSTPHTPVQHGYLSPKPPSQQLGSPYRPHHSQSPQVGTPQRE 1494
Query: 211 -QRQFQALPGPPALRCKRASSG-----VELGDCKISYGSTCSEQKQAYRPQDLP-----E 259
QR F ++A+SG G +Y + + P P
Sbjct: 1495 PQRNFYPAAQNLPANTQQATSGTLFTQTPSGQSSATYSQFNQQSLNSTAPPPPPPPPPSS 1554
Query: 260 DRYDKAQATAHIHCVNIRPGDGLFRDRTTKAEHFYAREPEPFVLHHDQTPESHILKGNWC 319
Y Q +A+ N G + T + + P P H+ G++
Sbjct: 1555 SYYQNQQPSANFQNYNQLKGSLSQQTVFTSGPN----QALPGTTSQQTVPGHHVTPGHFL 1610
Query: 320 PGPGSLDTFMQYFYGQPPPPTQPPS 344
P PPPP PP+
Sbjct: 1611 PSQNPTIHHQTAAAVVPPPPPPPPA 1635
>gi|115298686 protein inhibitor of activated STAT, 3 [Homo sapiens]
Length = 628
Score = 32.3 bits (72), Expect = 1.0
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 451 YKDEFPFKYQGPAALRLKNPQEGFVPLGTPHQRGCREKIDPLVPQPPMYLCP 502
Y+ FP K GP+ L L + G P+G+P PL P PP L P
Sbjct: 61 YRRRFPRKTLGPSDLSLLSLPPGTSPVGSP---------GPLAPIPPTLLAP 103
>gi|148886752 immunoglobulin superfamily, member 9B [Homo sapiens]
Length = 1349
Score = 32.3 bits (72), Expect = 1.0
Identities = 50/210 (23%), Positives = 66/210 (31%), Gaps = 39/210 (18%)
Query: 295 AREPEPFVLHHDQTPESHILKGNWCPGPGSLDTFMQYFYGQPPPPTQPPSRHVPHEKLQS 354
AR P P HH Q + Y P +PP +VP
Sbjct: 953 ARPPAPRPFHHGQ--------------------YYGYLSSSSPGEVEPPPFYVPEVGSPL 992
Query: 355 HVTLGEPKLLKRFFKTTMGSDYCPSEWRQVQKAPNLHLQQ------SYLPRGTGEFDFLT 408
+ P L + G P E + L L Q S P G EF F
Sbjct: 993 SSVMSSPPLPT---EGPFGHPTIPEENGENASNSTLPLTQTPTGGRSPEPWGRPEFPFGG 1049
Query: 409 MNQK-MLKPHRTPPAPVTEEMLQRCKYSHMEPPLGGLRFFSTQYKDEFP--FKYQGPAAL 465
+ M+ PH+ PP V E + + PP S Q +P + P
Sbjct: 1050 LETPAMMFPHQLPPCDVPESLQPKAGLPRGLPPT------SLQVPAAYPGILSLEAPKGW 1103
Query: 466 RLKNPQEGFVPLGTPHQRGCREKIDPLVPQ 495
K+P G VP P + + PLV Q
Sbjct: 1104 AGKSPGRGPVP-APPAAKWQDRPMQPLVSQ 1132
>gi|44917604 SLIT-ROBO Rho GTPase activating protein 1 [Homo
sapiens]
Length = 1085
Score = 32.0 bits (71), Expect = 1.4
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 334 GQPPPPTQPPSR--------HVPHEKLQSHVTLGEPKL 363
G+PPPP + P R H PH S V LG P L
Sbjct: 852 GEPPPPVRRPGRTSDGHCPLHPPHALSNSSVDLGSPSL 889
>gi|224494026 tumor necrosis factor receptor superfamily, member 10b
isoform 2 precursor [Homo sapiens]
Length = 411
Score = 31.6 bits (70), Expect = 1.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 223 LRCKRASSG-VELGDCKISYGSTCSEQKQAYRPQDLPE 259
LRC R SG VEL C + + C ++ +R +D PE
Sbjct: 114 LRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPE 151
>gi|224494019 tumor necrosis factor receptor superfamily, member 10b
isoform 1 precursor [Homo sapiens]
Length = 440
Score = 31.6 bits (70), Expect = 1.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 223 LRCKRASSG-VELGDCKISYGSTCSEQKQAYRPQDLPE 259
LRC R SG VEL C + + C ++ +R +D PE
Sbjct: 114 LRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPE 151
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 31.6 bits (70), Expect = 1.8
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 158 PPGDRDKLRIPPTTHQALFPPHDARPQPRAPSCHLGGPNTLKWDYTRQDGTSYQRQFQAL 217
P +R++ R+P +T A P +P PR P G + GT +Q
Sbjct: 132 PLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAAGGTRLAQQAPF- 190
Query: 218 PGPPALRCKR 227
PA RC+R
Sbjct: 191 ---PAARCRR 197
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 31.6 bits (70), Expect = 1.8
Identities = 32/123 (26%), Positives = 46/123 (37%), Gaps = 14/123 (11%)
Query: 10 SRPCPMSRLDFLKASHFSLGPDLRLHEGTMRTTSHRDFAYPAATREPPSLQPPPA----- 64
S P+ + S GP L +R+ + + A PP+L PPPA
Sbjct: 338 SSSAPLGLGKHVSLSPHGPGPHLSTSHLALRSQAQHQL-HAAMFAAPPTLPPPPALPASS 396
Query: 65 LLFPMDPRWDREERVSEAHRAF-------PPPSTPPWELLQAQARERTLAMQAGNLHLHE 117
L+ P P D E E + F P S P LL+A+ + Q + H H+
Sbjct: 397 LVLPGHPA-DHELLRQELNTRFLVQSAERPGASLGPGALLRAEFHQHQHTHQHTHQHTHQ 455
Query: 118 DAH 120
H
Sbjct: 456 HQH 458
>gi|60223083 hypothetical protein LOC283726 [Homo sapiens]
Length = 398
Score = 31.6 bits (70), Expect = 1.8
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 373 GSDYCPSEWRQVQKAPNLHLQQSYLPRGTGEFDFLTMNQKMLKPHRTPPAPVTEEMLQRC 432
GSDYCP E + K P H+ + Y P+ G+ D T ++ L ++ P + + ++
Sbjct: 18 GSDYCPYE---IVKQPR-HVPEEYKPK-QGKIDLGTTYKRDLNSYKVQPVAIVRPLERQV 72
Query: 433 KYSHME 438
K ++
Sbjct: 73 KKGKLD 78
>gi|19913379 G6B protein isoform G6b-D precursor [Homo sapiens]
Length = 193
Score = 31.2 bits (69), Expect = 2.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 160 GDRDKLRIPPTTHQALFPPHDARPQPRAPSCHLGG 194
GDR + P TH AL PPH + + RAP GG
Sbjct: 124 GDRTYCKAPGPTH-ALSPPHSSTCENRAPEASKGG 157
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 31.2 bits (69), Expect = 2.3
Identities = 31/134 (23%), Positives = 44/134 (32%), Gaps = 19/134 (14%)
Query: 56 PPSLQPPPALLFPMDPRWDREERVSEAHRAFPPPSTPPWELLQAQARERTLAMQAGNLHL 115
PP L PPP + W PPP PP + +++ Q LH
Sbjct: 83 PPPLPPPPVMPGGGYGDWQPP----------PPPMPPPPGPALSYQKQQQYKHQM--LHH 130
Query: 116 HEDAHAGIGLSNAHAAYGWPELPARTRERIRGARLIFDRDSLPPGDRDKLRIPPTTHQAL 175
D G+ + P +P G+ + + +PP PPT+ Q
Sbjct: 131 QRDGPPGLVPMELESPPESPPVPP-------GSYMPPSQSYMPPPQPPPSYYPPTSSQPY 183
Query: 176 FPPHDARPQPRAPS 189
PP P PS
Sbjct: 184 LPPAQPSPSQSPPS 197
Score = 30.8 bits (68), Expect = 3.0
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 22 KASHFSLGPDLRLH----EGTMRTTSHRDFAYP--AATREPPSL-QPPPALLFPMDPRWD 74
K F P + H E ++ TS R YP + R PP + +PP +++ P P
Sbjct: 1475 KMKDFGSEPQMADHLPPQESRLQNTSSRPGMYPPPGSYRPPPPMGKPPGSIVRPSAPPAR 1534
Query: 75 REERVSEAHRAFPPPSTPP 93
V+ PPP PP
Sbjct: 1535 SSVPVTRPPVPIPPPPPPP 1553
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 30.8 bits (68), Expect = 3.0
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 57 PSLQPPPALLFPMDPRWDREERVSEAHRAFPPPSTPP 93
P P P LL P P +E SE H PPP PP
Sbjct: 669 PPQPPSPLLLLPPQP----DEPGSERHHPAPPPPPPP 701
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 30.8 bits (68), Expect = 3.0
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 57 PSLQPPPALLFPMDPRWDREERVSEAHRAFPPPSTPP 93
P P P LL P P +E SE H PPP PP
Sbjct: 669 PPQPPSPLLLLPPQP----DEPGSERHHPAPPPPPPP 701
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 30.8 bits (68), Expect = 3.0
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 57 PSLQPPPALLFPMDPRWDREERVSEAHRAFPPPSTPP 93
P P P LL P P +E SE H PPP PP
Sbjct: 669 PPQPPSPLLLLPPQP----DEPGSERHHPAPPPPPPP 701
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 298 PEPFVLHHDQTPESHILKGNW------CPG-PGSLDTFMQYFYGQPPPPTQPPSRHVPHE 350
P + +H P I G W CP G + + + +GQPP PT P
Sbjct: 468 PSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKGKVQKILIWKWGQPPSPTPVPRPPDADP 527
Query: 351 KLQSHVTL-GEPKLLKRFFKTTMGSDYCPSEW 381
S L G P+ ++FF G Y W
Sbjct: 528 NTPSPKPLEGRPE--RQFFVKWQGMSYWHCSW 557
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,571,682
Number of Sequences: 37866
Number of extensions: 1658021
Number of successful extensions: 6181
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 6046
Number of HSP's gapped (non-prelim): 222
length of query: 505
length of database: 18,247,518
effective HSP length: 107
effective length of query: 398
effective length of database: 14,195,856
effective search space: 5649950688
effective search space used: 5649950688
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.