Guide to the Human Genome
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Name: C19orf45 Sequence: fasta or formatted (505aa) NCBI GI: 208022678
Description:

hypothetical protein LOC374877

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         36           2
 C cysteine            2.4         12           1
 D aspartate           5.0         25           1
 E glutamate           5.3         27           2
 F phenylalanine       4.4         22           2
 G glycine             6.3         32           2
 H histidine           4.8         24           2
 I isoleucine          1.8          9           1
 K lysine              4.2         21           1
 L leucine             9.5         48           2
 M methionine          2.4         12           1
 N asparagine          1.6          8           1
 P proline            13.3         67           4
 Q glutamine           6.3         32           2
 R arginine            8.3         42           1
 S serine              5.3         27           2
 T threonine           5.7         29           2
 V valine              2.0         10           1
 W tryptophan          1.2          6           1
 Y tyrosine            3.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC374877 
SOS1                  0.010   son of sevenless homolog 1 
MTMR3                 0.010   myotubularin-related protein 3 isoform b 
MTMR3                 0.010   myotubularin-related protein 3 isoform a 
MTMR3                 0.010   myotubularin-related protein 3 isoform c 
AFF1                  0.009   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
SCAF1                 0.009   SR-related CTD-associated factor 1 
KLF4                  0.008   Kruppel-like factor 4 (gut) 
CCNK                  0.008   cyclin K isoform 1 
LOC100128994          0.008   PREDICTED: hypothetical protein 
NHSL1                 0.008   NHS-like 1 
LOC100129509          0.007   PREDICTED: hypothetical protein 
LOC100129509          0.007   PREDICTED: hypothetical protein 
LOC100129509          0.007   PREDICTED: hypothetical protein 
MLL5                  0.007   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.007   myeloid/lymphoid or mixed-lineage leukemia 5 
PIAS3                 0.007   protein inhibitor of activated STAT, 3 
IGSF9B                0.007   immunoglobulin superfamily, member 9B 
SRGAP1                0.007   SLIT-ROBO Rho GTPase activating protein 1 
TNFRSF10B             0.007   tumor necrosis factor receptor superfamily, member ...
TNFRSF10B             0.007   tumor necrosis factor receptor superfamily, member ...
LOC100127930          0.007   PREDICTED: hypothetical protein 
FBRSL1                0.007   fibrosin-like 1 
FAM154B               0.007   hypothetical protein LOC283726 
C6orf25               0.006   G6B protein isoform G6b-D precursor 
YLPM1                 0.006   YLP motif containing 1 
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.006   PREDICTED: functional smad suppressing element 18 [...
CHD4                  0.006   chromodomain helicase DNA binding protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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