Guide to the Human Genome
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Name: LOC100129509 Sequence: fasta or formatted (498aa) NCBI GI: 169204760
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {498aa} PREDICTED: hypothetical protein
alt prot {441aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         40           2
 C cysteine            1.8          9           1
 D aspartate           1.6          8           1
 E glutamate           5.2         26           2
 F phenylalanine       2.0         10           1
 G glycine             9.4         47           2
 H histidine           2.6         13           1
 I isoleucine          1.8          9           1
 K lysine              2.6         13           1
 L leucine            14.1         70           3
 M methionine          1.0          5           1
 N asparagine          1.6          8           1
 P proline             9.8         49           2
 Q glutamine           6.6         33           2
 R arginine            6.8         34           1
 S serine              9.2         46           3
 T threonine           5.2         26           1
 V valine              6.2         31           3
 W tryptophan          3.4         17           2
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129509          1.000   PREDICTED: hypothetical protein 
LOC100129509          0.824   PREDICTED: hypothetical protein 
LOC100129218          0.056   PREDICTED: hypothetical protein 
LOC100129218          0.056   PREDICTED: hypothetical protein 
LOC100129218          0.056   PREDICTED: hypothetical protein 
LOC100291384          0.015   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.015   PREDICTED: hypothetical protein XP_002343004 
TOR1AIP2              0.015   torsin A interacting protein 2 
LOC100291560          0.013   PREDICTED: hypothetical protein XP_002345645 
LOC100289976          0.013   PREDICTED: hypothetical protein XP_002346488 
LOC100288941          0.013   PREDICTED: hypothetical protein XP_002342332 
SRRM1                 0.011   serine/arginine repetitive matrix 1 
HEG1                  0.010   HEG homolog 1 
FAM22G                0.010   hypothetical protein LOC441457 
MYO15A                0.009   myosin XV 
RREB1                 0.009   ras responsive element binding protein 1 isoform 2 [...
RREB1                 0.009   ras responsive element binding protein 1 isoform 1 [...
LOC100288796          0.008   PREDICTED: hypothetical protein 
LOC100291290          0.008   PREDICTED: hypothetical protein XP_002347363 
LOC100288796          0.008   PREDICTED: hypothetical protein XP_002343710 
LOC100288147          0.008   PREDICTED: hypothetical protein XP_002343226 
MAP7D1                0.008   MAP7 domain containing 1 
C2orf55               0.008   hypothetical protein LOC343990 
TTN                   0.008   titin isoform N2-A 
LOC729417             0.008   PREDICTED: hypothetical protein 
LOC729417             0.008   PREDICTED: hypothetical protein 
LOC729417             0.008   PREDICTED: hypothetical protein 
PLB1                  0.008   phospholipase B1 
RYR1                  0.007   skeletal muscle ryanodine receptor isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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