Guide to the Human Genome
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Search of human proteins with 206725450

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|206725450 TAF12 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 20 kD [Homo sapiens]
         (161 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|206725450 TAF12 RNA polymerase II, TATA box binding protein (...   323   3e-89
gi|5032153 TAF12 RNA polymerase II, TATA box binding protein (TB...   323   3e-89
gi|4503381 down-regulator of transcription 1 [Homo sapiens]            37   0.007
gi|28173554 histone cluster 3, H2bb [Homo sapiens]                     34   0.062
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          33   0.14 
gi|122937239 zinc finger CCCH-type domain containing 5 [Homo sap...    32   0.18 
gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]      32   0.24 
gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens]      32   0.24 
gi|190014603 TBC1 domain family, member 13 [Homo sapiens]              32   0.31 
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]         30   0.69 
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]         30   0.69 
gi|157743245 WD repeat domain 43 [Homo sapiens]                        30   0.69 
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho...    30   0.90 
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho...    30   0.90 
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom...    30   0.90 
gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]                      30   0.90 
gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]                      30   0.90 
gi|117414152 transcription factor 19 [Homo sapiens]                    30   1.2  
gi|117414156 transcription factor 19 [Homo sapiens]                    30   1.2  
gi|55770834 centromere protein F [Homo sapiens]                        30   1.2  
gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]    29   1.5  
gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]    29   1.5  
gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]    29   1.5  
gi|31657117 SMEK homolog 1, suppressor of mek1 [Homo sapiens]          29   1.5  
gi|21687252 zinc finger protein 296 [Homo sapiens]                     29   2.0  
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap...    28   2.6  
gi|23065529 growth arrest-specific 2 like 1 isoform b [Homo sapi...    28   2.6  
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi...    28   2.6  
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi...    28   2.6  
gi|109240550 paraspeckle protein 1 [Homo sapiens]                      28   2.6  

>gi|206725450 TAF12 RNA polymerase II, TATA box binding protein
           (TBP)-associated factor, 20 kD [Homo sapiens]
          Length = 161

 Score =  323 bits (829), Expect = 3e-89
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK 60
           MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
Sbjct: 1   MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK 60

Query: 61  KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 120
           KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
Sbjct: 61  KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 120

Query: 121 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
           ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
Sbjct: 121 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161


>gi|5032153 TAF12 RNA polymerase II, TATA box binding protein
           (TBP)-associated factor, 20 kD [Homo sapiens]
          Length = 161

 Score =  323 bits (829), Expect = 3e-89
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK 60
           MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK
Sbjct: 1   MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTK 60

Query: 61  KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 120
           KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL
Sbjct: 61  KKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHL 120

Query: 121 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161
           ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK
Sbjct: 121 ERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTKK 161


>gi|4503381 down-regulator of transcription 1 [Homo sapiens]
          Length = 176

 Score = 37.0 bits (84), Expect = 0.007
 Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 53  ENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLE 112
           +++  + +  +  +++E  PN ++  D  E+++    +FI  + + A ++    +  T+ 
Sbjct: 8   DDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS 67

Query: 113 VKDVQLHLERQWNMWIPGFGS--EEIRPYKKACTTEAHKQRMALIR 156
            + V   LE        GFGS   E++   + C T A K+R A  R
Sbjct: 68  PEHVIQALESL------GFGSYISEVKEVLQECKTVALKRRKASSR 107


>gi|28173554 histone cluster 3, H2bb [Homo sapiens]
          Length = 126

 Score = 33.9 bits (76), Expect = 0.062
 Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 20  PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDED 79
           P+P+ + P     +  AV K     G   +   + +  +   K+   +++V P+  +   
Sbjct: 2   PDPSKSAPAPKKGSKKAVTKAQKKDGKKRKRGRKESYSIYVYKV---LKQVHPDTGISSK 58

Query: 80  VEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQ 117
              ++    +D  E + + A +LA + K ST+  ++VQ
Sbjct: 59  AMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREVQ 96


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 32.7 bits (73), Expect = 0.14
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 16   SSIKPEPASTPPQG-SMANSTAVVKIPGTPGAGGRLSPENN 55
            S +K EP  T P G  +   T  V +PG PG  G + P+ +
Sbjct: 2203 SGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGS 2243


>gi|122937239 zinc finger CCCH-type domain containing 5 [Homo
           sapiens]
          Length = 886

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 1   MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGA 46
           +N+FG +AL    + S++ P P S    GS+  S+A V IPG+ G+
Sbjct: 600 LNEFGVAALEKTFDNSTV-PHPGSITIGGSLLQSSAPVNIPGSLGS 644


>gi|58761530 polycomb group ring finger 6 isoform a [Homo sapiens]
          Length = 350

 Score = 32.0 bits (71), Expect = 0.24
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 22 PASTPPQGSMANSTAVVKIPGTPGAGG----RLSPENNQVLTKKKLQDLVREVDPNEQLD 77
          PA TP   +     A +   G PG  G     L PE +    + + +D   E++  E+L+
Sbjct: 32 PALTPAPAAGEEGPAPLSETGAPGCSGSRPPELEPERSLGRFRGRFEDEDEELEEEEELE 91

Query: 78 EDVEE 82
          E+ EE
Sbjct: 92 EEEEE 96


>gi|37655165 polycomb group ring finger 6 isoform b [Homo sapiens]
          Length = 275

 Score = 32.0 bits (71), Expect = 0.24
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 22 PASTPPQGSMANSTAVVKIPGTPGAGG----RLSPENNQVLTKKKLQDLVREVDPNEQLD 77
          PA TP   +     A +   G PG  G     L PE +    + + +D   E++  E+L+
Sbjct: 32 PALTPAPAAGEEGPAPLSETGAPGCSGSRPPELEPERSLGRFRGRFEDEDEELEEEEELE 91

Query: 78 EDVEE 82
          E+ EE
Sbjct: 92 EEEEE 96


>gi|190014603 TBC1 domain family, member 13 [Homo sapiens]
          Length = 400

 Score = 31.6 bits (70), Expect = 0.31
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 71  DPNEQLDEDVE--------EMLLQIADDFIESVVTAACQLARHRKS--STLEVKDVQLHL 120
           DPN +  E  E         ++ +I D+FI+S+  + C +    +   STL+ KDV+L+L
Sbjct: 245 DPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDSQCGITYKMEKVYSTLKDKDVELYL 304

Query: 121 ERQ 123
           + Q
Sbjct: 305 KLQ 307


>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
          Length = 3907

 Score = 30.4 bits (67), Expect = 0.69
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 50   LSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSS 109
            L  E  Q+  +++L  L R+ +  +     VE+ LLQ  +  ++  +   CQ  + R   
Sbjct: 1962 LEAEQQQIQEEREL--LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDL 2019

Query: 110  TLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTK 160
              +VK +++ +E Q + +I      E+   K     +  +Q  AL ++  K
Sbjct: 2020 QKQVKALEIDVEEQVSRFI------ELEQEKNTELMDLRQQNQALEKQLEK 2064


>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
          Length = 3899

 Score = 30.4 bits (67), Expect = 0.69
 Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 8/111 (7%)

Query: 50   LSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSS 109
            L  E  Q+  +++L  L R+ +  +     VE+ LLQ  +  ++  +   CQ  + R   
Sbjct: 1962 LEAEQQQIQEEREL--LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDL 2019

Query: 110  TLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKTTK 160
              +VK +++ +E Q + +I      E+   K     +  +Q  AL ++  K
Sbjct: 2020 QKQVKALEIDVEEQVSRFI------ELEQEKNTELMDLRQQNQALEKQLEK 2064


>gi|157743245 WD repeat domain 43 [Homo sapiens]
          Length = 677

 Score = 30.4 bits (67), Expect = 0.69
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 11  NLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLS---PENNQVLTKKK 62
           ++SN  + K E A T  +  + NS A V +PG PG    +    P+  QV +K+K
Sbjct: 376 DISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPPQTEQVESKRK 430


>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
           sapiens]
          Length = 531

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 22  PASTPPQGSMANSTAVVKIPGTPGAG------GRLSPENNQVLTKKKLQDLVREVDPNEQ 75
           P + P   + A +   + IPG  GAG        L+PE     +   L  +  +V   + 
Sbjct: 310 PLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI 369

Query: 76  LDEDVEEMLLQIADDFIESVVTAACQLA-RHRKSSTLEVKDVQLHLERQWNMWIPGFGSE 134
           L    E  L+Q+AD           QLA  H     L  K +++ L +  N+ +P  G E
Sbjct: 370 LFNKKENALVQMADG-------NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQE 422

Query: 135 E 135
           +
Sbjct: 423 D 423


>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
           sapiens]
          Length = 550

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 22  PASTPPQGSMANSTAVVKIPGTPGAG------GRLSPENNQVLTKKKLQDLVREVDPNEQ 75
           P + P   + A +   + IPG  GAG        L+PE     +   L  +  +V   + 
Sbjct: 329 PLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI 388

Query: 76  LDEDVEEMLLQIADDFIESVVTAACQLA-RHRKSSTLEVKDVQLHLERQWNMWIPGFGSE 134
           L    E  L+Q+AD           QLA  H     L  K +++ L +  N+ +P  G E
Sbjct: 389 LFNKKENALVQMADG-------NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQE 441

Query: 135 E 135
           +
Sbjct: 442 D 442


>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
           sapiens]
          Length = 557

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 22  PASTPPQGSMANSTAVVKIPGTPGAG------GRLSPENNQVLTKKKLQDLVREVDPNEQ 75
           P + P   + A +   + IPG  GAG        L+PE     +   L  +  +V   + 
Sbjct: 336 PLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKI 395

Query: 76  LDEDVEEMLLQIADDFIESVVTAACQLA-RHRKSSTLEVKDVQLHLERQWNMWIPGFGSE 134
           L    E  L+Q+AD           QLA  H     L  K +++ L +  N+ +P  G E
Sbjct: 396 LFNKKENALVQMADG-------NQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQE 448

Query: 135 E 135
           +
Sbjct: 449 D 449


>gi|17017980 kelch-like 4 isoform 2 [Homo sapiens]
          Length = 720

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 55  NQVLTKKKLQDLVREVDPN--EQLDEDVEEMLLQIADDFIESVVTAACQL 102
           N VL  K+ +  +  VDPN    L +     +LQ+ +D IES++ AAC L
Sbjct: 213 NDVLEAKQEEVRMEGVDPNALNSLVQYAYTGVLQLKEDTIESLLAAACLL 262


>gi|17017982 kelch-like 4 isoform 1 [Homo sapiens]
          Length = 718

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 55  NQVLTKKKLQDLVREVDPN--EQLDEDVEEMLLQIADDFIESVVTAACQL 102
           N VL  K+ +  +  VDPN    L +     +LQ+ +D IES++ AAC L
Sbjct: 213 NDVLEAKQEEVRMEGVDPNALNSLVQYAYTGVLQLKEDTIESLLAAACLL 262


>gi|117414152 transcription factor 19 [Homo sapiens]
          Length = 345

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 9   LINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVR 68
           L ++ + S ++P+P +  P      S  V   PG  G      P+ N+   +K +  ++ 
Sbjct: 176 LNSIGSLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNR---RKSVHRVLA 232

Query: 69  EVDPNEQLDEDVEEMLLQ 86
           E+D   +  E+   +L++
Sbjct: 233 ELDDESEPPENPPPVLME 250


>gi|117414156 transcription factor 19 [Homo sapiens]
          Length = 345

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 9   LINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVR 68
           L ++ + S ++P+P +  P      S  V   PG  G      P+ N+   +K +  ++ 
Sbjct: 176 LNSIGSLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNR---RKSVHRVLA 232

Query: 69  EVDPNEQLDEDVEEMLLQ 86
           E+D   +  E+   +L++
Sbjct: 233 ELDDESEPPENPPPVLME 250


>gi|55770834 centromere protein F [Homo sapiens]
          Length = 3114

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 9/78 (11%)

Query: 53   ENNQVLTKKKLQDLVREVDPN----EQLDEDVEEMLLQIADDFIESVVTAACQL-ARHR- 106
            +NN ++ +  +  L++EV+      E+ DE++  +  QI D   E +V+   Q+   H+ 
Sbjct: 2493 KNNYIVLQSSVNGLIQEVEDGKQKLEKKDEEISRLKNQIQDQ--EQLVSKLSQVEGEHQL 2550

Query: 107  -KSSTLEVKDVQLHLERQ 123
             K   LE++++ + LE++
Sbjct: 2551 WKEQNLELRNLTVELEQK 2568


>gi|169217174 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 248

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/53 (22%), Positives = 29/53 (54%)

Query: 66  LVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQL 118
           ++++V     L ++   ++  +  D ++ + T A QLA + K  T+  +D+Q+
Sbjct: 161 VLKQVHXGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQM 213


>gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/53 (22%), Positives = 29/53 (54%)

Query: 66  LVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQL 118
           ++++V     L ++   ++  +  D ++ + T A QLA + K  T+  +D+Q+
Sbjct: 170 VLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQM 222


>gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]
          Length = 257

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/53 (22%), Positives = 29/53 (54%)

Query: 66  LVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQL 118
           ++++V     L ++   ++  +  D ++ + T A QLA + K  T+  +D+Q+
Sbjct: 170 VLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQM 222


>gi|31657117 SMEK homolog 1, suppressor of mek1 [Homo sapiens]
          Length = 820

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 11  NLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREV 70
           NL++ SS    P S    GS  +       PG+PG+  + + +   + TK  L  LV   
Sbjct: 742 NLTSQSSTTNLPGSPGSPGSPGS-------PGSPGSVPKNTSQTAAITTKGGLVGLVDYP 794

Query: 71  DPNEQLDEDVEE 82
           D +E  DED ++
Sbjct: 795 DDDEDDDEDEDK 806


>gi|21687252 zinc finger protein 296 [Homo sapiens]
          Length = 475

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 11/48 (22%)

Query: 16  SSIKPEPA-------STPP----QGSMANSTAVVKIPGTPGAGGRLSP 52
           S+  PEPA       ST P    +G+ A +TA V+ PG PG+G +  P
Sbjct: 300 SAAPPEPAVHAAAPTSTLPCSGGEGAGAAATAGVQEPGAPGSGAQAGP 347


>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
           sapiens]
          Length = 570

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 22  PASTPPQGSMANSTAVVKI-----PGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQ 75
           P + P  G+ A+ T   KI     P T  +GG  SPE+ Q  + +  + L RE++   Q
Sbjct: 60  PQTNPSVGTAASDTKKKKINNGTNPETTTSGGCHSPEDEQKASHQHQEALRRELEAQVQ 118


>gi|23065529 growth arrest-specific 2 like 1 isoform b [Homo
           sapiens]
          Length = 337

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 20  PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREV 70
           P   + P  G     TA    PGTP  G R++P +      + L +LVRE+
Sbjct: 172 PPAPNAPAAGEDTTETAPA--PGTPARGPRMTPSD-----LRNLDELVREI 215


>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
           sapiens]
          Length = 681

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 20  PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREV 70
           P   + P  G     TA    PGTP  G R++P +      + L +LVRE+
Sbjct: 172 PPAPNAPAAGEDTTETAPA--PGTPARGPRMTPSD-----LRNLDELVREI 215


>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
           sapiens]
          Length = 681

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 20  PEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREV 70
           P   + P  G     TA    PGTP  G R++P +      + L +LVRE+
Sbjct: 172 PPAPNAPAAGEDTTETAPA--PGTPARGPRMTPSD-----LRNLDELVREI 215


>gi|109240550 paraspeckle protein 1 [Homo sapiens]
          Length = 523

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 1   MNQFGPSALINLSNFSSIKPEPASTPPQGSMANSTAVVKIPGTP-GAGGRLSPE 53
           M   GP   IN+ +  S  P     PP     N      IPG P G G  + PE
Sbjct: 393 MGDMGPRGAINMGDAFSPAPAGNQGPPPMMGMNMNNRATIPGPPMGPGPAMGPE 446


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.128    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,817,712
Number of Sequences: 37866
Number of extensions: 316316
Number of successful extensions: 1402
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 1346
Number of HSP's gapped (non-prelim): 124
length of query: 161
length of database: 18,247,518
effective HSP length: 94
effective length of query: 67
effective length of database: 14,688,114
effective search space: 984103638
effective search space used: 984103638
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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