Search of human proteins with 20544151

Search of human proteins with 20544151

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20544151 chromobox homolog 3 [Homo sapiens]
         (183 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|15082258 chromobox homolog 3 [Homo sapiens]                        373   e-104
gi|20544151 chromobox homolog 3 [Homo sapiens]                        373   e-104
gi|5803076 heterochromatin protein 1-beta [Homo sapiens]              256   8e-69
gi|187960037 heterochromatin protein 1-beta [Homo sapiens]            256   8e-69
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]           228   2e-60
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]           228   2e-60
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]             228   2e-60
gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophi...   140   8e-34
gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo ...   140   8e-34
gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo ...   140   8e-34
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]                    63   1e-10
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]               63   1e-10
gi|221307494 chromodomain protein, Y chromosome-like isoform a [...    61   5e-10
gi|55770830 chromobox homolog 4 [Homo sapiens]                         61   6e-10
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]               60   1e-09
gi|10190682 chromobox homolog 8 [Homo sapiens]                         60   1e-09
gi|28372505 chromobox homolog 7 [Homo sapiens]                         57   9e-09
gi|46852392 chromobox homolog 6 [Homo sapiens]                         56   2e-08
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor...    55   3e-08
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo...    55   3e-08
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s...    55   3e-08
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s...    55   3e-08
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]        55   3e-08
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]         55   3e-08
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]             51   6e-07
gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens]     50   1e-06
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]      49   2e-06
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...    38   0.004
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa...    38   0.004
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...    38   0.006

>gi|15082258 chromobox homolog 3 [Homo sapiens]
          Length = 183

 Score =  373 bits (958), Expect = e-104
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT 60
           MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
Sbjct: 1   MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT 60

Query: 61  WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG 120
           WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
Sbjct: 61  WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG 120

Query: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180
           LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
Sbjct: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180

Query: 181 EAQ 183
           EAQ
Sbjct: 181 EAQ 183


>gi|20544151 chromobox homolog 3 [Homo sapiens]
          Length = 183

 Score =  373 bits (958), Expect = e-104
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT 60
           MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT
Sbjct: 1   MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNT 60

Query: 61  WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG 120
           WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG
Sbjct: 61  WEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARG 120

Query: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180
           LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED
Sbjct: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180

Query: 181 EAQ 183
           EAQ
Sbjct: 181 EAQ 183


>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
          Length = 185

 Score =  256 bits (654), Expect = 8e-69
 Identities = 129/177 (72%), Positives = 148/177 (83%), Gaps = 6/177 (3%)

Query: 11  MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC 69
           MGKKQN K  ++V E E EE+VVEKVLDRRVV GKVEY LKWKGF+D DNTWEPEENLDC
Sbjct: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60

Query: 70  PELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARGLDPE 124
           P+LI  FL SQK   E D   G KRK+ SDSE   ++SK KKK++ ++KPRGFARGL+PE
Sbjct: 61  PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120

Query: 125 RIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDE 181
           RIIGATDSSGELMFLMKWK+SDEADLV AKEAN+KCPQ+VI+FYEERLTWHS P ++
Sbjct: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED 177


>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
          Length = 185

 Score =  256 bits (654), Expect = 8e-69
 Identities = 129/177 (72%), Positives = 148/177 (83%), Gaps = 6/177 (3%)

Query: 11  MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC 69
           MGKKQN K  ++V E E EE+VVEKVLDRRVV GKVEY LKWKGF+D DNTWEPEENLDC
Sbjct: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60

Query: 70  PELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARGLDPE 124
           P+LI  FL SQK   E D   G KRK+ SDSE   ++SK KKK++ ++KPRGFARGL+PE
Sbjct: 61  PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120

Query: 125 RIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDE 181
           RIIGATDSSGELMFLMKWK+SDEADLV AKEAN+KCPQ+VI+FYEERLTWHS P ++
Sbjct: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED 177


>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  228 bits (582), Expect = 2e-60
 Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 10/180 (5%)

Query: 11  MGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP 70
           MGKK    +      + EE+VVEKVLDRRVV G+VEY LKWKGF++  NTWEPE+NLDCP
Sbjct: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60

Query: 71  ELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA-DKPRGFARG 120
           ELI  F+   K  KE          +  KRKS   + +DD KSKKKR+ + D  RGF RG
Sbjct: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120

Query: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180
           L+PE+IIGATDS G+LMFLMKWKD+DEADLVLAKEAN+KCPQIVIAFYEERLTWH+ PED
Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180


>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  228 bits (582), Expect = 2e-60
 Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 10/180 (5%)

Query: 11  MGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP 70
           MGKK    +      + EE+VVEKVLDRRVV G+VEY LKWKGF++  NTWEPE+NLDCP
Sbjct: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60

Query: 71  ELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA-DKPRGFARG 120
           ELI  F+   K  KE          +  KRKS   + +DD KSKKKR+ + D  RGF RG
Sbjct: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120

Query: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180
           L+PE+IIGATDS G+LMFLMKWKD+DEADLVLAKEAN+KCPQIVIAFYEERLTWH+ PED
Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180


>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  228 bits (582), Expect = 2e-60
 Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 10/180 (5%)

Query: 11  MGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCP 70
           MGKK    +      + EE+VVEKVLDRRVV G+VEY LKWKGF++  NTWEPE+NLDCP
Sbjct: 1   MGKKTKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDCP 60

Query: 71  ELIEAFLNSQKAGKE---------KDGTKRKSLSDSESDDSKSKKKRDAA-DKPRGFARG 120
           ELI  F+   K  KE          +  KRKS   + +DD KSKKKR+ + D  RGF RG
Sbjct: 61  ELISEFMKKYKKMKEGENNKPREKSESNKRKSNFSNSADDIKSKKKREQSNDIARGFERG 120

Query: 121 LDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPED 180
           L+PE+IIGATDS G+LMFLMKWKD+DEADLVLAKEAN+KCPQIVIAFYEERLTWH+ PED
Sbjct: 121 LEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAYPED 180


>gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophila
           HP1 gamma) [Homo sapiens]
          Length = 142

 Score =  140 bits (352), Expect = 8e-34
 Identities = 72/106 (67%), Positives = 81/106 (76%), Gaps = 5/106 (4%)

Query: 83  GKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKW 142
           G  + GT    L  +ESD SKS+KKRDAADKPRGFA GLDPER+IGATD SG+ MFLM+W
Sbjct: 37  GSGQCGTPPLILFGTESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRW 96

Query: 143 KDSDEADLVLAKEANMKCPQI-----VIAFYEERLTWHSCPEDEAQ 183
           KDS EAD +LAKEA+M+  Q      VIAFYEERLTWH CPEDE Q
Sbjct: 97  KDSGEADFMLAKEASMQFSQFHYAWPVIAFYEERLTWHFCPEDETQ 142


>gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo
           sapiens]
          Length = 142

 Score =  140 bits (352), Expect = 8e-34
 Identities = 72/106 (67%), Positives = 81/106 (76%), Gaps = 5/106 (4%)

Query: 83  GKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKW 142
           G  + GT    L  +ESD SKS+KKRDAADKPRGFA GLDPER+IGATD SG+ MFLM+W
Sbjct: 37  GSGQCGTPPLILFGTESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRW 96

Query: 143 KDSDEADLVLAKEANMKCPQI-----VIAFYEERLTWHSCPEDEAQ 183
           KDS EAD +LAKEA+M+  Q      VIAFYEERLTWH CPEDE Q
Sbjct: 97  KDSGEADFMLAKEASMQFSQFHYAWPVIAFYEERLTWHFCPEDETQ 142


>gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo
           sapiens]
          Length = 142

 Score =  140 bits (352), Expect = 8e-34
 Identities = 72/106 (67%), Positives = 81/106 (76%), Gaps = 5/106 (4%)

Query: 83  GKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKW 142
           G  + GT    L  +ESD SKS+KKRDAADKPRGFA GLDPER+IGATD SG+ MFLM+W
Sbjct: 37  GSGQCGTPPLILFGTESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRW 96

Query: 143 KDSDEADLVLAKEANMKCPQI-----VIAFYEERLTWHSCPEDEAQ 183
           KDS EAD +LAKEA+M+  Q      VIAFYEERLTWH CPEDE Q
Sbjct: 97  KDSGEADFMLAKEASMQFSQFHYAWPVIAFYEERLTWHFCPEDETQ 142


>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
          Length = 860

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 9/102 (8%)

Query: 23  EEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAF---LN 78
           EE   + F VEK+LD +   GKV Y ++WKG+T  D+TWEPE +L DC E++  F   + 
Sbjct: 52  EEDGEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIA 111

Query: 79  SQKAGKEKDGTKRKSLSD-----SESDDSKSKKKRDAADKPR 115
             KA   +   +R SL++     +   D +S+ K D + K +
Sbjct: 112 ENKAKAVRKDIQRLSLNNDIFEANSDSDQQSETKEDTSPKKK 153


>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
          Length = 532

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 30  FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF--------LNSQK 81
           F  E +L +R+  GK+EY +KW+G++   N+WEPEEN+  P L+ AF        + ++K
Sbjct: 12  FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQNRK 71

Query: 82  AGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPR 115
            GK   G  RK  + S        K+ DA  K +
Sbjct: 72  RGKRPRGRPRKLTAMSSCSRRSKLKEPDAPSKSK 105


>gi|221307494 chromodomain protein, Y chromosome-like isoform a
           [Homo sapiens]
          Length = 544

 Score = 61.2 bits (147), Expect = 5e-10
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 25  AEPEEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKA 82
           A  E + VE+++D+R    GK EY ++WKG+   D+TWEPE++L +C E I  F N +  
Sbjct: 2   ASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF-NRRHT 60

Query: 83  GKEKDG----TKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPE 124
            K+K+     T R S +++    S+S     +   P+    G D E
Sbjct: 61  EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHE 106


>gi|55770830 chromobox homolog 4 [Homo sapiens]
          Length = 560

 Score = 60.8 bits (146), Expect = 6e-10
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLN----SQKAGKE 85
          F VE +  +R+  G+VEY +KW+G++   NTWEPEEN+  P L+ AF N     Q  G  
Sbjct: 11 FAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRERQEQLMGYR 70

Query: 86 KDGTKRKSL 94
          K G K K L
Sbjct: 71 KRGPKPKPL 79


>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
          Length = 211

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 9/86 (10%)

Query: 30  FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF--------LNSQK 81
           F  E +L +R+  GK+EY +KW+G++   N+WEPEEN+  P L+ AF        + ++K
Sbjct: 12  FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAFQKKEHEKEVQNRK 71

Query: 82  AGKEKDGTKRKSLSDSESDDSKSKKK 107
            GK   G  RK L+   S   +SK K
Sbjct: 72  RGKRPRGRPRK-LTAMSSCSRRSKLK 96


>gi|10190682 chromobox homolog 8 [Homo sapiens]
          Length = 389

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 30  FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKA----GKE 85
           F  E +L RR+  G++EY +KWKG++   +TWEPEEN+    L+ AF   ++     G +
Sbjct: 11  FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEEREREMELYGPK 70

Query: 86  KDGTKRKSLSDSESDDSKSKKKRDAADKPRG 116
           K G K K+        +K+K     +D  RG
Sbjct: 71  KRGPKPKTFLLKAQAKAKAKTYEFRSDSARG 101


>gi|28372505 chromobox homolog 7 [Homo sapiens]
          Length = 251

 Score = 57.0 bits (136), Expect = 9e-09
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQK----AGKE 85
          F VE +  +RV  GKVEY +KWKG+    +TWEPEE++  P L+ A+   ++    +G  
Sbjct: 11 FAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEERDRASGYR 70

Query: 86 KDGTKRKSL 94
          K G K K L
Sbjct: 71 KRGPKPKRL 79


>gi|46852392 chromobox homolog 6 [Homo sapiens]
          Length = 412

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 4/68 (5%)

Query: 30 FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKA----GKE 85
          F  E ++ RR+  G++EY +KWKG+    +TWEPEEN+    LI AF   ++     G +
Sbjct: 11 FAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERELYGPK 70

Query: 86 KDGTKRKS 93
          K G K K+
Sbjct: 71 KRGPKPKT 78


>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b
           [Homo sapiens]
          Length = 554

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 15/100 (15%)

Query: 28  EEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKAGKE 85
           +EF VE ++D+R   NG  +Y ++WKG+   D+TWEPE++L +C + +  F N ++  K+
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDF-NRRQTEKQ 62

Query: 86  K------------DGTKRKSLSDSESDDSKSKKKRDAADK 113
           K            +  +R++   ++++ SK+  K    DK
Sbjct: 63  KKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK 102


>gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform
           a [Homo sapiens]
          Length = 540

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 15/100 (15%)

Query: 28  EEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKAGKE 85
           +EF VE ++D+R   NG  +Y ++WKG+   D+TWEPE++L +C + +  F N ++  K+
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDF-NRRQTEKQ 62

Query: 86  K------------DGTKRKSLSDSESDDSKSKKKRDAADK 113
           K            +  +R++   ++++ SK+  K    DK
Sbjct: 63  KKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK 102


>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
           sapiens]
          Length = 554

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 15/100 (15%)

Query: 28  EEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKAGKE 85
           +EF VE ++D+R   NG  +Y ++WKG+   D+TWEPE++L +C + +  F N ++  K+
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDF-NRRQTEKQ 62

Query: 86  K------------DGTKRKSLSDSESDDSKSKKKRDAADK 113
           K            +  +R++   ++++ SK+  K    DK
Sbjct: 63  KKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK 102


>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
           sapiens]
          Length = 540

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 15/100 (15%)

Query: 28  EEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKAGKE 85
           +EF VE ++D+R   NG  +Y ++WKG+   D+TWEPE++L +C + +  F N ++  K+
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDF-NRRQTEKQ 62

Query: 86  K------------DGTKRKSLSDSESDDSKSKKKRDAADK 113
           K            +  +R++   ++++ SK+  K    DK
Sbjct: 63  KKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK 102


>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
          Length = 541

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 15/100 (15%)

Query: 28  EEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKAGKE 85
           +EF VE ++D+R   NG  +Y ++WKG+   D+TWEPE++L +C + +  F N ++  K+
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDF-NRRQTEKQ 62

Query: 86  K------------DGTKRKSLSDSESDDSKSKKKRDAADK 113
           K            +  +R++   ++++ SK+  K    DK
Sbjct: 63  KKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK 102


>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
          Length = 541

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 15/100 (15%)

Query: 28  EEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKAGKE 85
           +EF VE ++D+R   NG  +Y ++WKG+   D+TWEPE++L +C + +  F N ++  K+
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDF-NRRQTEKQ 62

Query: 86  K------------DGTKRKSLSDSESDDSKSKKKRDAADK 113
           K            +  +R++   ++++ SK+  K    DK
Sbjct: 63  KKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDK 102


>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
          Length = 506

 Score = 50.8 bits (120), Expect = 6e-07
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 18/99 (18%)

Query: 25  AEPEEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEEN-LDCPELIEAFLNSQ-- 80
           A  + + VE+++D+R    GK EY ++WKG+   ++TWEPE + L C E I+ F      
Sbjct: 2   ASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMS 61

Query: 81  -----KAGKEKD---------GTKRKSLSDSESDDSKSK 105
                K+GK+           G   + LS   SD  KSK
Sbjct: 62  KDKRIKSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSK 100


>gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens]
          Length = 350

 Score = 49.7 bits (117), Expect = 1e-06
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 18/130 (13%)

Query: 47  YFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQ----------KAGKEKDGTKRKSLSD 96
           Y +KWKG+ D+ NTWEP +NL CP L++ F N +          KA   KD  K    + 
Sbjct: 4   YLVKWKGWPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKKGKAITPKDNNKTLKPAI 63

Query: 97  SESDDSKSKKK------RDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADL 150
           +E    K+K++      +D  ++ +     +  E  +       +  ++ ++K +    L
Sbjct: 64  AEYIVKKAKQRIALQRWQDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISL 123

Query: 151 VLAKEANMKC 160
           V   EA   C
Sbjct: 124 V--NEATFGC 131


>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
          Length = 412

 Score = 48.9 bits (115), Expect = 2e-06
 Identities = 17/48 (35%), Positives = 32/48 (66%)

Query: 29 EFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAF 76
          +F VE + D + +  +  Y +KW+G+ D+++TWEP +NL C  +++ F
Sbjct: 42 DFEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQF 89


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
           sapiens]
          Length = 1954

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 10/108 (9%)

Query: 46  EYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSK 105
           E+F+KW G +    +W  E  L+    +  + N Q+     +       S  E   S+ +
Sbjct: 510 EFFVKWAGLSYWHCSWVKELQLELYHTV-MYRNYQRKNDMDEPPPFDYGSGDEDGKSEKR 568

Query: 106 KKRD---AADKPRGFARGLDPE-----RIIG-ATDSSGELMFLMKWKD 144
           K +D   A  + R +  G+ PE     RI+  + D  G++ +L+KWKD
Sbjct: 569 KNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKD 616



 Score = 30.4 bits (67), Expect = 0.89
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 18/115 (15%)

Query: 12  GKKQNGKSK-----KVEEA------EPEEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADN 59
           GK +  K+K     K+EE       +PE  ++ ++L+      G V Y +KWK       
Sbjct: 563 GKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNHSFDKKGDVHYLIKWKDLPYDQC 622

Query: 60  TWEPEENLDCP---ELIEAFLNSQK--AGKEKDGTKRKSLSDSESDDSKSKKKRD 109
           TWE ++ +D P    L +A+   ++   G++    KR      +  D K +K  D
Sbjct: 623 TWEIDD-IDIPYYDNLKQAYWGHRELMLGEDTRLPKRLLKKGKKLRDDKQEKPPD 676


>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
           sapiens]
          Length = 1710

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 13/25 (52%), Positives = 19/25 (76%)

Query: 43  GKVEYFLKWKGFTDADNTWEPEENL 67
           G+++Y +KWKG++   NTWE EE L
Sbjct: 314 GEIQYLIKWKGWSHIHNTWETEETL 338



 Score = 29.6 bits (65), Expect = 1.5
 Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 32/145 (22%)

Query: 10  KMGKKQNGKSKKV-----EEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWE-- 62
           K GKK  G+ K+      E+ + E++  +K   RR     V Y    +  TD+D+  E  
Sbjct: 200 KNGKKILGQKKRQIDSSEEDDDEEDYDNDKRSSRRQATVNVSYKEDEEMKTDSDDLLEVC 259

Query: 63  ----PEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFA 118
               P+   +  E IE F++ +   K   G    ++   E+D           D   GF 
Sbjct: 260 GEDVPQPEEEEFETIERFMDCRIGRKGATGA-TTTIYAVEAD----------GDPNAGFE 308

Query: 119 RGLDPERIIGATDSSGELMFLMKWK 143
           +  +P          GE+ +L+KWK
Sbjct: 309 KNKEP----------GEIQYLIKWK 323


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
           sapiens]
          Length = 1912

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 16/110 (14%)

Query: 46  EYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSK 105
           ++F+KW+G +    +W  E  L+    +  F N Q+    K+        D   D+ KS+
Sbjct: 542 QFFVKWQGMSYWHCSWVSELQLELHCQV-MFRNYQR----KNDMDEPPSGDFGGDEEKSR 596

Query: 106 KKRD-----AADKPRGFARGLDPE-----RIIG-ATDSSGELMFLMKWKD 144
           K+++     A  + R +  G+ PE     RI+  + D  G + +L+KW+D
Sbjct: 597 KRKNKDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRD 646



 Score = 32.0 bits (71), Expect = 0.30
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 9   QKMGKKQNGKSKKVEEAE---------PEEFVVEKVLDRRV-VNGKVEYFLKWKGFTDAD 58
           ++  +K+  K  K  E E         PE  ++ ++L+  V   G V Y +KW+      
Sbjct: 592 EEKSRKRKNKDPKFAEMEERFYRYGIKPEWMMIHRILNHSVDKKGHVHYLIKWRDLPYDQ 651

Query: 59  NTWEPE--ENLDCPELIEAFLNSQKAGKEKDGTKRKSL 94
            +WE E  E  D     +++ N ++  + ++G   K L
Sbjct: 652 ASWESEDVEIQDYDLFKQSYWNHRELMRGEEGRPGKKL 689


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.128    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,222,154
Number of Sequences: 37866
Number of extensions: 319646
Number of successful extensions: 1627
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 219
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.