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Search of human proteins with 20302040
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20302040 hypothetical protein LOC122945 isoform 2 [Homo
sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20302040 hypothetical protein LOC122945 isoform 2 [Homo sapiens] 513 e-146
gi|164698426 hypothetical protein LOC122945 isoform 1 [Homo sapi... 462 e-131
gi|24797097 pyrroline-5-carboxylate reductase 1 isoform 1 [Homo ... 52 5e-07
gi|24797095 pyrroline-5-carboxylate reductase 1 isoform 2 [Homo ... 52 5e-07
gi|198041662 pyrroline-5-carboxylate reductase-like [Homo sapiens] 48 7e-06
gi|21361454 pyrroline-5-carboxylate reductase family, member 2 [... 44 1e-04
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 33 0.23
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 33 0.23
gi|218505793 protocadherin 15 isoform CD3-2 precursor [Homo sapi... 33 0.23
gi|218505791 protocadherin 15 isoform CD3-1 precursor [Homo sapi... 33 0.23
gi|218505789 protocadherin 15 isoform CD2-2 precursor [Homo sapi... 33 0.23
gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapi... 33 0.23
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 33 0.23
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi... 33 0.23
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 33 0.23
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 33 0.23
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 33 0.23
gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapi... 33 0.23
gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens] 33 0.23
gi|56549147 dudulin 2 isoform b [Homo sapiens] 29 3.4
gi|56549145 dudulin 2 isoform a [Homo sapiens] 29 3.4
gi|59853425 dudulin 2 isoform b [Homo sapiens] 29 3.4
gi|183227703 mitochondrial translation optimization 1 homolog is... 28 5.8
gi|19882217 mitochondrial translation optimization 1 homolog iso... 28 5.8
gi|74024895 mitochondrial translation optimization 1 homolog iso... 28 5.8
gi|217272839 choline dehydrogenase [Homo sapiens] 28 5.8
gi|169172882 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17... 28 7.5
gi|169172781 PREDICTED: Inactive ubiquitin carboxyl-terminal hyd... 28 7.5
gi|33859668 Rabring 7 [Homo sapiens] 28 7.5
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 28 9.8
>gi|20302040 hypothetical protein LOC122945 isoform 2 [Homo sapiens]
Length = 250
Score = 513 bits (1322), Expect = e-146
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS 60
MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS
Sbjct: 1 MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS 60
Query: 61 SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ 120
SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ
Sbjct: 61 SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ 120
Query: 121 KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL 180
KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL
Sbjct: 121 KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL 180
Query: 181 LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAGHGSTYFWHSFEN 240
LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAGHGSTYFWHSFEN
Sbjct: 181 LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAGHGSTYFWHSFEN 240
Query: 241 YFPVGPLLSY 250
YFPVGPLLSY
Sbjct: 241 YFPVGPLLSY 250
>gi|164698426 hypothetical protein LOC122945 isoform 1 [Homo
sapiens]
Length = 359
Score = 462 bits (1190), Expect = e-131
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS 60
MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS
Sbjct: 1 MDMLQDLESLQFEYGVPEEDRIWLYLQGRSRGLMIEACAHATFFCKLLYNLRASLNKNQS 60
Query: 61 SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ 120
SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ
Sbjct: 61 SRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ 120
Query: 121 KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL 180
KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL
Sbjct: 121 KLGIKCFYHNADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKL 180
Query: 181 LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAG 228
LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAG
Sbjct: 181 LLNHTNILRPQYQYDEDSVSVWGANKGVIAALQDPTILQATCPYSPAG 228
>gi|24797097 pyrroline-5-carboxylate reductase 1 isoform 1 [Homo
sapiens]
Length = 319
Score = 52.0 bits (123), Expect = 5e-07
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 79 VGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPE--TLGELQKLGIKCFYHNADLVSW 136
VG IG G L LA G + A + S+ + T+ L+K+G+K HN + V
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 137 ADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKLLLN 183
+DV+FL P +P I EI +E IV S A + + ++ L+
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLS 109
>gi|24797095 pyrroline-5-carboxylate reductase 1 isoform 2 [Homo
sapiens]
Length = 316
Score = 52.0 bits (123), Expect = 5e-07
Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 79 VGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPE--TLGELQKLGIKCFYHNADLVSW 136
VG IG G L LA G + A + S+ + T+ L+K+G+K HN + V
Sbjct: 3 VGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQH 62
Query: 137 ADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRLKLLLN 183
+DV+FL P +P I EI +E IV S A + + ++ L+
Sbjct: 63 SDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLS 109
>gi|198041662 pyrroline-5-carboxylate reductase-like [Homo sapiens]
Length = 286
Score = 48.1 bits (113), Expect = 7e-06
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 71 SATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQKLGIKCFYHN 130
+A P +VG +G G + +A L++ G + A+ + S L Q LG + + N
Sbjct: 15 AAEPSPRRVGFVGAGRMAGAIAQGLIRAGKVEAQHILASAPTDRNLCHFQALGCRTTHSN 74
Query: 131 ADLVSWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPLPRL-KLLLNHTNILR 189
+++ ++ P LP + E+ + I+ S A + L L +LL +T +LR
Sbjct: 75 QEVLQSCLLVIFATKPHVLPAVLAEVAPVVTTEHILVSVAAGVSLSTLEELLPPNTRVLR 134
>gi|21361454 pyrroline-5-carboxylate reductase family, member 2
[Homo sapiens]
Length = 320
Score = 44.3 bits (103), Expect = 1e-04
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 6/101 (5%)
Query: 79 VGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPE----TLGELQKLGIKCFYHNADLV 134
VG IG G L LA G + A + S+ PE T+ L+K+G+ N + V
Sbjct: 3 VGFIGAGQLAYALARGFTAAGILSAHKIIASS--PEMNLPTVSALRKMGVNLTRSNKETV 60
Query: 135 SWADVIFLCCLPSQLPNICVEIYTSLEKASIVYSFVAAIPL 175
+DV+FL P +P I EI ++ IV S A + +
Sbjct: 61 KHSDVLFLAVKPHIIPFILDEIGADVQARHIVVSCAAGVTI 101
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1299 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1358
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1359 AFIIILCCIPAIL 1371
>gi|218505793 protocadherin 15 isoform CD3-2 precursor [Homo sapiens]
Length = 1677
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393
>gi|218505791 protocadherin 15 isoform CD3-1 precursor [Homo sapiens]
Length = 1682
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1326 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1385
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1386 AFIIILCCIPAIL 1398
>gi|218505789 protocadherin 15 isoform CD2-2 precursor [Homo sapiens]
Length = 1539
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393
>gi|218505787 protocadherin 15 isoform CD2-1 precursor [Homo sapiens]
Length = 1790
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1333 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1392
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1393 AFIIILCCIPAIL 1405
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1299 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1358
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1359 AFIIILCCIPAIL 1371
>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
Length = 1915
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1284 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1343
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1344 AFIIILCCIPAIL 1356
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
Length = 1952
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
Length = 1886
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1250 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1309
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1310 AFIIILCCIPAIL 1322
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
Length = 1957
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1321 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1380
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1381 AFIIILCCIPAIL 1393
>gi|218505775 protocadherin 15 isoform CD1-1 precursor [Homo sapiens]
Length = 1962
Score = 33.1 bits (74), Expect = 0.23
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 82 IGGGHLGKQLAGTLLQLG----PIPAESLRI-STRRPETLGELQKLGIKCFYHNADLVSW 136
I L K L G LL + P E RI R PE + ++K G Y L++
Sbjct: 1326 IDRNELFKFLDGKLLDINKDFQPYYGEGGRILEIRTPEAVTSIKKRGESLGYTEGALLAL 1385
Query: 137 ADVIFLCCLPSQL 149
A +I LCC+P+ L
Sbjct: 1386 AFIIILCCIPAIL 1398
>gi|40556376 cytokine-like nuclear factor n-pac [Homo sapiens]
Length = 553
Score = 33.1 bits (74), Expect = 0.23
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 71 SATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQKLGIKCFYHN 130
S TP + K+G +G G +G + LL++G ++ + R E + G +
Sbjct: 262 SITPTDKKIGFLGLGLMGSGIVSNLLKMG----HTVTVWNRTAEKCDLFIQEGARLGRTP 317
Query: 131 ADLVSWADVIFLC 143
A++VS D+ F C
Sbjct: 318 AEVVSTCDITFAC 330
>gi|56549147 dudulin 2 isoform b [Homo sapiens]
Length = 488
Score = 29.3 bits (64), Expect = 3.4
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 55 LNKNQSSRHL--SIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRR 112
++K S HL S SL E KVGI+G G + LA L+ G + + +R
Sbjct: 5 MDKPLISLHLVDSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSG----FKVVVGSRN 60
Query: 113 PETLGELQKLGIKCFYHNADLVSWADVIFLCCLPSQLPNIC 153
P+ L + + + VS +VIF+ ++C
Sbjct: 61 PKRTARLFPSAAQVTFQE-EAVSSPEVIFVAVFREHYSSLC 100
>gi|56549145 dudulin 2 isoform a [Homo sapiens]
Length = 498
Score = 29.3 bits (64), Expect = 3.4
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 55 LNKNQSSRHL--SIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRR 112
++K S HL S SL E KVGI+G G + LA L+ G + + +R
Sbjct: 15 MDKPLISLHLVDSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSG----FKVVVGSRN 70
Query: 113 PETLGELQKLGIKCFYHNADLVSWADVIFLCCLPSQLPNIC 153
P+ L + + + VS +VIF+ ++C
Sbjct: 71 PKRTARLFPSAAQVTFQE-EAVSSPEVIFVAVFREHYSSLC 110
>gi|59853425 dudulin 2 isoform b [Homo sapiens]
Length = 488
Score = 29.3 bits (64), Expect = 3.4
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 55 LNKNQSSRHL--SIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRR 112
++K S HL S SL E KVGI+G G + LA L+ G + + +R
Sbjct: 5 MDKPLISLHLVDSDSSLAKVPDEAPKVGILGSGDFARSLATRLVGSG----FKVVVGSRN 60
Query: 113 PETLGELQKLGIKCFYHNADLVSWADVIFLCCLPSQLPNIC 153
P+ L + + + VS +VIF+ ++C
Sbjct: 61 PKRTARLFPSAAQVTFQE-EAVSSPEVIFVAVFREHYSSLC 100
>gi|183227703 mitochondrial translation optimization 1 homolog
isoform c [Homo sapiens]
Length = 732
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 68 SLNSATPE--EFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGEL 119
S +SA P F V +IGGGH G + A + G + T R +T+G++
Sbjct: 26 SSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCG----SRTLLLTHRVDTIGQM 75
>gi|19882217 mitochondrial translation optimization 1 homolog
isoform b [Homo sapiens]
Length = 717
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 68 SLNSATPE--EFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGEL 119
S +SA P F V +IGGGH G + A + G + T R +T+G++
Sbjct: 26 SSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCG----SRTLLLTHRVDTIGQM 75
>gi|74024895 mitochondrial translation optimization 1 homolog
isoform a [Homo sapiens]
Length = 692
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 68 SLNSATPE--EFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGEL 119
S +SA P F V +IGGGH G + A + G + T R +T+G++
Sbjct: 26 SSDSAAPRTPHFDVIVIGGGHAGTEAATAAARCG----SRTLLLTHRVDTIGQM 75
>gi|217272839 choline dehydrogenase [Homo sapiens]
Length = 594
Score = 28.5 bits (62), Expect = 5.8
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 52 RASLNKNQSSRHLSIGSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTR 111
R +L + QS ++ S S + +E+ ++G G G LAG L + PAE + +
Sbjct: 16 RGALGQQQSLGARALASAGSESRDEYSYVVVGAGSAGCVLAGRLTE---DPAERVLLLEA 72
Query: 112 RPE 114
P+
Sbjct: 73 GPK 75
>gi|169172882 PREDICTED: Ubiquitin carboxyl-terminal hydrolase
17-like protein 3 [Homo sapiens]
Length = 530
Score = 28.1 bits (61), Expect = 7.5
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 102 PAESLRISTRRPETLGE-LQKLGIKCFYHNADL 133
P E L +S+RRP +G LQ +G C Y NA L
Sbjct: 64 PREKLPLSSRRPAAVGAGLQNMGNTC-YENASL 95
>gi|169172781 PREDICTED: Inactive ubiquitin carboxyl-terminal
hydrolase 17-like protein 4 [Homo sapiens]
Length = 530
Score = 28.1 bits (61), Expect = 7.5
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 102 PAESLRISTRRPETLGE-LQKLGIKCFYHNADL 133
P E L +S+RRP +G LQ +G C Y NA L
Sbjct: 64 PREKLPLSSRRPAAVGAGLQNMGNTC-YENASL 95
>gi|33859668 Rabring 7 [Homo sapiens]
Length = 304
Score = 28.1 bits (61), Expect = 7.5
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 22/98 (22%)
Query: 67 GSLNSATPEEFKVGIIGGGHLGKQLAGTLLQLGPIPAESLRISTRRPETLGELQ-KLGIK 125
G L+S P ++ G G + QL G L GP PA+ +I++ T+ + Q +G++
Sbjct: 169 GMLHS-NPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQVDMGLE 227
Query: 126 C--------------------FYHNADLVSWADVIFLC 143
C F+H++ +V W ++ C
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTC 265
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 27.7 bits (60), Expect = 9.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 195 DEDSVSVWGANKGVIAALQDPTILQATCPYSPAGHGST 232
D DS+ G KG L+DP++ + S + HGS+
Sbjct: 492 DRDSLGSSGCLKGSPLVLKDPSLFSSLSASSTSSHGSS 529
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,001,259
Number of Sequences: 37866
Number of extensions: 435391
Number of successful extensions: 874
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 32
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.