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Search of human proteins with 199560355
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|199560355 hypothetical protein LOC283643 isoform 1 [Homo
sapiens]
(426 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|199560355 hypothetical protein LOC283643 isoform 1 [Homo sapi... 858 0.0
gi|199560438 hypothetical protein LOC283643 isoform 2 [Homo sapi... 773 0.0
gi|199560536 hypothetical protein LOC283643 isoform 4 [Homo sapi... 679 0.0
gi|112382239 desmuslin isoform B [Homo sapiens] 41 0.002
gi|112382237 desmuslin isoform A [Homo sapiens] 41 0.002
gi|169203406 PREDICTED: hypothetical protein [Homo sapiens] 36 0.058
gi|169202578 PREDICTED: hypothetical protein [Homo sapiens] 36 0.058
gi|157785645 SPEG complex locus [Homo sapiens] 35 0.099
gi|39812115 actin-related protein 8 [Homo sapiens] 35 0.17
gi|197382472 actin filament associated protein 1 isoform a [Homo... 34 0.29
gi|40807504 actin filament associated protein 1 [Homo sapiens] 34 0.29
gi|115583657 hypothetical protein LOC150368 [Homo sapiens] 33 0.38
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 33 0.64
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 32 0.84
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 32 0.84
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 32 0.84
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 32 0.84
gi|226495417 coiled-coil domain containing 102A [Homo sapiens] 32 1.1
gi|30039694 zinc finger protein 598 [Homo sapiens] 32 1.1
gi|71274186 hypothetical protein LOC85449 [Homo sapiens] 32 1.1
gi|38176300 nestin [Homo sapiens] 32 1.4
gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta ... 31 1.9
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 31 1.9
gi|40068479 mitochondrial rRNA methyltransferase 1 homolog [Homo... 31 2.4
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 31 2.4
gi|145701005 hypothetical protein LOC375759 [Homo sapiens] 31 2.4
gi|23238194 tumor necrosis factor receptor superfamily, member 1... 30 3.2
gi|55743108 ATG16 autophagy related 16-like 2 [Homo sapiens] 30 3.2
gi|126032348 hect domain and RLD 2 [Homo sapiens] 30 4.2
gi|122937223 NOBOX oogenesis homeobox [Homo sapiens] 30 4.2
>gi|199560355 hypothetical protein LOC283643 isoform 1 [Homo
sapiens]
Length = 426
Score = 858 bits (2216), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MGRRRQRVDPAAGARAGALPEAIAALSRSLPSGPSPEIFRRAKFDRPEATSALWQLLFRV 60
MGRRRQRVDPAAGARAGALPEAIAALSRSLPSGPSPEIFRRAKFDRPEATSALWQLLFRV
Sbjct: 1 MGRRRQRVDPAAGARAGALPEAIAALSRSLPSGPSPEIFRRAKFDRPEATSALWQLLFRV 60
Query: 61 LSPLPAGNALASLALEVQARLVKSALCSQGYPRLALAQLPEDGSQGSRELLLALSWLLAR 120
LSPLPAGNALASLALEVQARLVKSALCSQGYPRLALAQLPEDGSQGSRELLLALSWLLAR
Sbjct: 61 LSPLPAGNALASLALEVQARLVKSALCSQGYPRLALAQLPEDGSQGSRELLLALSWLLAR 120
Query: 121 GPVPEQMLAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDVRHVQWLMGKLRFRWR 180
GPVPEQMLAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDVRHVQWLMGKLRFRWR
Sbjct: 121 GPVPEQMLAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDVRHVQWLMGKLRFRWR 180
Query: 181 QLVSSQQEQCALLSKIHLYTRGCHSDQSLSHLSVTEAEMLRDPEGGQQLLRTLERENQRL 240
QLVSSQQEQCALLSKIHLYTRGCHSDQSLSHLSVTEAEMLRDPEGGQQLLRTLERENQRL
Sbjct: 181 QLVSSQQEQCALLSKIHLYTRGCHSDQSLSHLSVTEAEMLRDPEGGQQLLRTLERENQRL 240
Query: 241 EAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALE 300
EAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALE
Sbjct: 241 EAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALE 300
Query: 301 EELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHG 360
EELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHG
Sbjct: 301 EELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHG 360
Query: 361 PHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIW 420
PHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIW
Sbjct: 361 PHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIW 420
Query: 421 IPPPGR 426
IPPPGR
Sbjct: 421 IPPPGR 426
>gi|199560438 hypothetical protein LOC283643 isoform 2 [Homo
sapiens]
Length = 393
Score = 773 bits (1996), Expect = 0.0
Identities = 393/426 (92%), Positives = 393/426 (92%), Gaps = 33/426 (7%)
Query: 1 MGRRRQRVDPAAGARAGALPEAIAALSRSLPSGPSPEIFRRAKFDRPEATSALWQLLFRV 60
MGRRRQRVDPAAGARAGALPEAIAALSRSLPSGPSPEIFRRAKFDRPEATSALWQLLFRV
Sbjct: 1 MGRRRQRVDPAAGARAGALPEAIAALSRSLPSGPSPEIFRRAKFDRPEATSALWQLLFRV 60
Query: 61 LSPLPAGNALASLALEVQARLVKSALCSQGYPRLALAQLPEDGSQGSRELLLALSWLLAR 120
LSPLPAGNALASLALEVQARLVKSALCSQGYPRLALAQLPEDGSQGSRELLLALSWLLAR
Sbjct: 61 LSPLPAGNALASLALEVQARLVKSALCSQGYPRLALAQLPEDGSQGSRELLLALSWLLAR 120
Query: 121 GPVPEQMLAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDVRHVQWLMGKLRFRWR 180
GPVPEQMLAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDVRHVQWLMGKLRFRWR
Sbjct: 121 GPVPEQMLAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDVRHVQWLMGKLRFRWR 180
Query: 181 QLVSSQQEQCALLSKIHLYTRGCHSDQSLSHLSVTEAEMLRDPEGGQQLLRTLERENQRL 240
QLVSSQQEQCALLSK LLRTLERENQRL
Sbjct: 181 QLVSSQQEQCALLSK---------------------------------LLRTLERENQRL 207
Query: 241 EAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALE 300
EAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALE
Sbjct: 208 EAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALE 267
Query: 301 EELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHG 360
EELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHG
Sbjct: 268 EELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHG 327
Query: 361 PHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIW 420
PHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIW
Sbjct: 328 PHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLVGARPGLIW 387
Query: 421 IPPPGR 426
IPPPGR
Sbjct: 388 IPPPGR 393
>gi|199560536 hypothetical protein LOC283643 isoform 4 [Homo
sapiens]
Length = 352
Score = 679 bits (1753), Expect = 0.0
Identities = 345/381 (90%), Positives = 346/381 (90%), Gaps = 33/381 (8%)
Query: 46 RPEATSALWQLLFRVLSPLPAGNALASLALEVQARLVKSALCSQGYPRLALAQLPEDGSQ 105
R + TSALWQLLFRVLSPLPAGNALASLALEVQARLVKSALCSQGYPRLALAQLPEDGSQ
Sbjct: 5 RGDWTSALWQLLFRVLSPLPAGNALASLALEVQARLVKSALCSQGYPRLALAQLPEDGSQ 64
Query: 106 GSRELLLALSWLLARGPVPEQMLAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDV 165
GSRELLLALSWLLARGPVPEQMLAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDV
Sbjct: 65 GSRELLLALSWLLARGPVPEQMLAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDV 124
Query: 166 RHVQWLMGKLRFRWRQLVSSQQEQCALLSKIHLYTRGCHSDQSLSHLSVTEAEMLRDPEG 225
RHVQWLMGKLRFRWRQLVSSQQEQCALLSK
Sbjct: 125 RHVQWLMGKLRFRWRQLVSSQQEQCALLSK------------------------------ 154
Query: 226 GQQLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERG 285
LLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERG
Sbjct: 155 ---LLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERG 211
Query: 286 GGELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGAL 345
GGELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGAL
Sbjct: 212 GGELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGAL 271
Query: 346 QQCWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCR 405
QQCWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCR
Sbjct: 272 QQCWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCR 331
Query: 406 QELARLVGARPGLIWIPPPGR 426
QELARLVGARPGLIWIPPPGR
Sbjct: 332 QELARLVGARPGLIWIPPPGR 352
>gi|112382239 desmuslin isoform B [Homo sapiens]
Length = 1253
Score = 41.2 bits (95), Expect = 0.002
Identities = 41/120 (34%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 230 LRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGGEL 289
+R LEREN LE L RR W CA E + Q L W GE
Sbjct: 29 VRELERENLLLEEELRGRRGREGLWAEGQA---RCAEEARSLRQQLDELSWATALAEGER 85
Query: 290 DLV---VRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQ 346
D + +RELQ L+ E R A R +A+ G R + + RA+ EA+ LG LQ
Sbjct: 86 DALRRELRELQRLDAEERAA----RGRLDAELGAQQRELQEALGARAALEAL---LGRLQ 138
>gi|112382237 desmuslin isoform A [Homo sapiens]
Length = 1565
Score = 41.2 bits (95), Expect = 0.002
Identities = 41/120 (34%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 230 LRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAAASQPTFLPWVPERGGGEL 289
+R LEREN LE L RR W CA E + Q L W GE
Sbjct: 29 VRELERENLLLEEELRGRRGREGLWAEGQA---RCAEEARSLRQQLDELSWATALAEGER 85
Query: 290 DLV---VRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQ 346
D + +RELQ L+ E R A R +A+ G R + + RA+ EA+ LG LQ
Sbjct: 86 DALRRELRELQRLDAEERAA----RGRLDAELGAQQRELQEALGARAALEAL---LGRLQ 138
>gi|169203406 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 36.2 bits (82), Expect = 0.058
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 262 GTCAPEVPAAASQPTF--LPWVPERGGGELDLVVRELQALEEEL-REAAERRRAAWEAKA 318
G C P AAA P LP P+ GGG DL+ L + E + R ERR++ + K+
Sbjct: 66 GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKS 125
Query: 319 GGCGRG 324
G G G
Sbjct: 126 GQSGDG 131
>gi|169202578 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 36.2 bits (82), Expect = 0.058
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 262 GTCAPEVPAAASQPTF--LPWVPERGGGELDLVVRELQALEEEL-REAAERRRAAWEAKA 318
G C P AAA P LP P+ GGG DL+ L + E + R ERR++ + K+
Sbjct: 66 GACGPGAGAAAPAPAAASLPEEPDGGGGPDDLLPLPLWLVAEGIFRPQGERRKSGRKDKS 125
Query: 319 GGCGRG 324
G G G
Sbjct: 126 GQSGDG 131
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 35.4 bits (80), Expect = 0.099
Identities = 43/144 (29%), Positives = 55/144 (38%), Gaps = 22/144 (15%)
Query: 265 APE--VPAAASQPTF-----LPWVPERGGGELDLVVRELQALEEELREAAERRRAAWEAK 317
APE VP+A P +P VP R G L + L++ A +EAK
Sbjct: 2289 APEKRVPSAGGPPVLAEKARVPTVPPRPGSSLSSSIENLES------------EAVFEAK 2336
Query: 318 AGGCGRGPEWSAARRASREAVEKELGALQQCWERDG--GPAQPHGPHRLVRREDGAAGDR 375
P R SR E E G + E DG P+ P LVRR + + +
Sbjct: 2337 FKRSRESPLSLGLRLLSRSRSE-ERGPFRGAEEEDGIYRPSPAGTPLELVRRPERSRSVQ 2395
Query: 376 DLRAAVVIRTLRSQEACLEAVLRR 399
DLRA +R L LRR
Sbjct: 2396 DLRAVGEPGLVRRLSLSLSQRLRR 2419
Score = 28.9 bits (63), Expect = 9.3
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 269 PAAASQPTFLPWVPERGG--------GELDLVVRELQALEEELREAAE-RRRAAWEAKAG 319
P+ A P L PER GE LV R +L + LR +R AWEA+ G
Sbjct: 2375 PSPAGTPLELVRRPERSRSVQDLRAVGEPGLVRRLSLSLSQRLRRTPPAQRHPAWEAR-G 2433
Query: 320 GCGRGPEWSAARRAS 334
G G E ++ R S
Sbjct: 2434 GDGESSEGGSSARGS 2448
>gi|39812115 actin-related protein 8 [Homo sapiens]
Length = 624
Score = 34.7 bits (78), Expect = 0.17
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 159 AEGPVDV-RHVQWLMGKLRFRWRQLVSSQQEQCALLSKIHLYTRGCHSDQSLSHLSVTEA 217
A G DV R WLM + F +R+ + + C LL HL CH DQ +S L E
Sbjct: 308 AYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQ--HLKETFCHLDQDISGLQDHEF 365
Query: 218 EMLRDPEGGQQLLRTLERENQRLEAVLA 245
+ +R P+ LL +++L+A +A
Sbjct: 366 Q-IRHPD-SPALLYQFRLGDEKLQAPMA 391
>gi|197382472 actin filament associated protein 1 isoform a [Homo
sapiens]
Length = 814
Score = 33.9 bits (76), Expect = 0.29
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 375 RDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLV 412
+DLRAA+ + R +A LE L++L+ +CRQ+ A V
Sbjct: 677 KDLRAAIEVNAGRKPQAILEEKLKQLEEECRQKEAERV 714
>gi|40807504 actin filament associated protein 1 [Homo sapiens]
Length = 730
Score = 33.9 bits (76), Expect = 0.29
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 375 RDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLV 412
+DLRAA+ + R +A LE L++L+ +CRQ+ A V
Sbjct: 593 KDLRAAIEVNAGRKPQAILEEKLKQLEEECRQKEAERV 630
>gi|115583657 hypothetical protein LOC150368 [Homo sapiens]
Length = 259
Score = 33.5 bits (75), Expect = 0.38
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 265 APEVPAAASQPTFLPWVPERGGGELDLVVRELQALEEELREA-AERRRAAWEAKAGGC-G 322
A E PAA Q ++ + G + LVVREL++ ++ R++ A +RR++W++ A C
Sbjct: 102 AAEGPAA--QEAWVKVLSRASFGYMRLVVRELESQLQDARQSLALQRRSSWKSVASRCKP 159
Query: 323 RGPEWSAARRASREAVEKE---LGALQQCWERDGG 354
+ P AA + + K+ +G +++ R G
Sbjct: 160 QAPNHRAAGLENGHCLSKDSSPVGLVEEAGSRSAG 194
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 32.7 bits (73), Expect = 0.64
Identities = 23/68 (33%), Positives = 30/68 (44%)
Query: 303 LREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHGPH 362
L + +E+R+ E G E RR S EA AL+ C ER G A+P H
Sbjct: 913 LDKNSEKRKEQTEKHKSVPGYLSEKDKKRRESAEAGRDRKDALESCKERRDGRAKPEEAH 972
Query: 363 RLVRREDG 370
R +E G
Sbjct: 973 REELKECG 980
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 32.3 bits (72), Expect = 0.84
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 4 RRQRVDPAAGARAGALPEAIAALSRSLPSGPSPEIFRRAKFD-RPEATSALWQLLFRVLS 62
RRQR A RAGA P L P PSP + + RP + W+LL R
Sbjct: 178 RRQRRRKAGAERAGAGPTLTPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRP 237
Query: 63 PLPAGNA 69
AG+A
Sbjct: 238 ERAAGSA 244
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 32.3 bits (72), Expect = 0.84
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 4 RRQRVDPAAGARAGALPEAIAALSRSLPSGPSPEIFRRAKFD-RPEATSALWQLLFRVLS 62
RRQR A RAGA P L P PSP + + RP + W+LL R
Sbjct: 178 RRQRRRKAGAERAGAGPTLTPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRP 237
Query: 63 PLPAGNA 69
AG+A
Sbjct: 238 ERAAGSA 244
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 32.3 bits (72), Expect = 0.84
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 4 RRQRVDPAAGARAGALPEAIAALSRSLPSGPSPEIFRRAKFD-RPEATSALWQLLFRVLS 62
RRQR A RAGA P L P PSP + + RP + W+LL R
Sbjct: 178 RRQRRRKAGAERAGAGPTLTPPLPAGSPDPPSPAATAAPQPEQRPHLSRGQWRLLPRRRP 237
Query: 63 PLPAGNA 69
AG+A
Sbjct: 238 ERAAGSA 244
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 32.3 bits (72), Expect = 0.84
Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 157 MEAEGPVDVRHVQWLMGKLRFRWRQL---VSSQQEQCALLSKIHLYTRGCHSDQSLSHLS 213
+E P H+Q ++ W +L + ++ E A ++H + + Q
Sbjct: 3137 LERGAPRRYPHIQAQRSRIEAAWERLDQAIKARTENLAAAHEVHSFQQAAAELQGRMQ-- 3194
Query: 214 VTEAEMLRDPEGGQQL--LRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAA 271
+ +++ +GG L +RTL+++++RLE L E+ + LG P P
Sbjct: 3195 -EKTALMKGEDGGHSLSSVRTLQQQHRRLERELEAMEKEVARLQTEACRLGQLHPAAPGG 3253
Query: 272 ASQ 274
++
Sbjct: 3254 LAK 3256
>gi|226495417 coiled-coil domain containing 102A [Homo sapiens]
Length = 550
Score = 32.0 bits (71), Expect = 1.1
Identities = 59/224 (26%), Positives = 84/224 (37%), Gaps = 31/224 (13%)
Query: 122 PVPEQM-LAQARVPLGDEMTVCQCEALASPGPPAPHMEAEGPVDVRHVQWLMGKLRFRWR 180
P PE+M A + P T A P PPAP + A+G + R R R
Sbjct: 27 PSPERMGPADSLPPTPPSGTPSPGPPPALPLPPAPALLADGDWESRE--------ELRLR 78
Query: 181 QLVSSQQEQCALLSKIHLYTRGCHSDQSLSHLSVTEAEMLRDPEGGQQLLRTLE------ 234
+L ++ + A + K C ++ S AE R E +QL + L+
Sbjct: 79 ELEEARA-RAAQMEKTMRRWSDCTANWR-EKWSKVRAERNRAREEVRQLRQRLDALTKEL 136
Query: 235 ----RENQRLEAVLAWRRSELVFWRWMDTVLGTC--APEVPAAASQPTFLPWVPERGGGE 288
RE Q + R EL R V PE P A +P G E
Sbjct: 137 AGARRERQEAQGECEARGRELARLRGARGVADQTRDGPE-PEAEREPV------RDVGSE 189
Query: 289 LDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARR 332
+EL+ +E L+ E WEA++ G G GP S+ R+
Sbjct: 190 RPPGSQELELVESLLKSMPEESEDCWEARSLGAG-GPRGSSGRQ 232
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 32.0 bits (71), Expect = 1.1
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 288 ELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQ 347
E+D R+ + R A + RR +W K R E +AA RAS A ++E +
Sbjct: 308 EVDRYSRQGRVARAGTRGAQQSRRGSWRYKREEEDR--EVAAAVRASVAAQQQEEARRSE 365
Query: 348 CWERDG----------GPAQPHGPHRLVRREDGAAGDRD 376
E G GP P GP R R + G ++
Sbjct: 366 DQEEGGRPKKEEAAARGPEDPRGPRRSPRTQGEGPGPKE 404
>gi|71274186 hypothetical protein LOC85449 [Homo sapiens]
Length = 1200
Score = 32.0 bits (71), Expect = 1.1
Identities = 40/168 (23%), Positives = 58/168 (34%), Gaps = 42/168 (25%)
Query: 100 PEDGSQGSRELLLALSWLLARGPVPEQMLAQARVP--------LGDEMTVCQC------- 144
PED ++G L+ A G V QA+VP LG++ Q
Sbjct: 625 PEDKAKGLAVLIDARRQPPQPGLVSALQATQAQVPASIRAILFLGEKEAALQLQTLPDVQ 684
Query: 145 -EALASPGPPAPHMEA-------EGPVDVRHVQWLMGKLRFRWRQLVSSQQEQCALLSKI 196
E L S + H++ EGP H +W+ K+
Sbjct: 685 VEVLTSLKALSHHVDPSQLPAVLEGPFPYCHTEWVH-------------------FFQKL 725
Query: 197 HLYTRGCHSDQSLSHLSVTEAEMLRDPEGGQQLLRTLERENQRLEAVL 244
+ H SL S+ E E P G Q+ R L + + +EAVL
Sbjct: 726 DPFLADLHQASSLLQASIEEFEKADPPGGMQEATRCLSKSKELMEAVL 773
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 31.6 bits (70), Expect = 1.4
Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 93 RLALAQLPEDGSQGSREL---LLALSWLLARGPVPEQMLAQARVPLGDEMTVCQCEALAS 149
RLA + E+ ++ R + A +WL ++ E+ L RV +E +A +
Sbjct: 99 RLARERTTEEVARNRRAVEAEKCARAWLSSQVAELERELEALRVAHEEERVGLNAQAACA 158
Query: 150 P-------GPPAPHMEAE-----------GPV-----DVRHVQWLMGKLRFRWRQLVSSQ 186
P GPPAP E E G V V H++ +G+ R R + V
Sbjct: 159 PRCPAPPRGPPAPAPEVEELARRLGEAWRGAVRGYQERVAHMETSLGQARERLGRAVQGA 218
Query: 187 QEQCALLSKIHLYTRGCHSDQSL--SHLSVTEAEMLRDPEGGQQLLRTLERENQRLEAVL 244
+E L ++ G ++ L E LR E Q + LE+E Q L++ +
Sbjct: 219 REGRLELQQLQAERGGLLERRAALEQRLEGRWQERLRATEKFQLAVEALEQEKQGLQSQI 278
Query: 245 A 245
A
Sbjct: 279 A 279
>gi|114842389 myosin, heavy polypeptide 7B, cardiac muscle, beta [Homo
sapiens]
Length = 1983
Score = 31.2 bits (69), Expect = 1.9
Identities = 36/127 (28%), Positives = 48/127 (37%), Gaps = 20/127 (15%)
Query: 286 GGELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGAL 345
G ++ ++ELQA EEL E E RAA A R +EL L
Sbjct: 1150 GAQMQKKIKELQARAEELEEELEAERAA--------------RARVEKQRAEAARELEEL 1195
Query: 346 QQCWERDGGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCR 405
+ E GG + G R+ + G LR + LR + A LRR Q +
Sbjct: 1196 SERLEEAGGASA--GQREGCRKREAELG--RLRRELEEAALRHEATV--AALRRKQAEGA 1249
Query: 406 QELARLV 412
EL V
Sbjct: 1250 AELGEQV 1256
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 31.2 bits (69), Expect = 1.9
Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 257 MDTVLGTCAPEVPAAASQPTFLPWVPERGGGELDLVVRELQALEEELREAAERRRAAWEA 316
++ G PE PAAA + F W E LD R LEE+LRE +
Sbjct: 675 LEEASGMHLPERPAAAPRRPF-SW--EDVDRLLDPANRAHLGLEEQLRELLDMLDLTCAM 731
Query: 317 KAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPHGPHRLVRREDGAA 372
K+ G S ++RA + ++KE+ L+ + P GP EDGAA
Sbjct: 732 KSSG-------SRSKRA--KLLKKEIALLRNKLSQQHSQPLPTGPGLEGFEEDGAA 778
>gi|40068479 mitochondrial rRNA methyltransferase 1 homolog [Homo
sapiens]
Length = 353
Score = 30.8 bits (68), Expect = 2.4
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 48 EATSALWQLLFRVLSPLPAGNALASLALEVQARLVKSALCSQ--GYP----RLALAQLPE 101
+ A QLL +L L SL + V A ++ ++CSQ G+P R L Q P+
Sbjct: 265 QEVQASCQLLLTILPRRQLPPGLESLNVSVAAGILLHSICSQRKGFPTEGERRQLLQDPQ 324
Query: 102 DGSQGSRELLLALSWLLARGPVPEQ 126
+ S S L +A L+ GP E+
Sbjct: 325 EPSARSEGLSMAQHPGLSSGPEKER 349
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 30.8 bits (68), Expect = 2.4
Identities = 31/90 (34%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 266 PEVPAAASQPTFLPWVPERGGGELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGP 325
PEVPA ++ P P GGE E E EA A EA GG RGP
Sbjct: 18 PEVPAPLAER---PGEPGAAGGEA-----EGPEGSEGAEEAPRGAAAVKEAGGGGPDRGP 69
Query: 326 EWSA-ARRASREAVEKELGALQQCWERDGG 354
E A R + E E GA + GG
Sbjct: 70 EAEARGTRGAHGETEAEEGAPEGAEVPQGG 99
Score = 30.4 bits (67), Expect = 3.2
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 300 EEELREAAERRRAAWEAKAGGCGRGPEWSAARRASREAVEKELGALQQCWERDGGPAQPH 359
+EE RE + EA AGG P+ S ASR A E E E GPA+
Sbjct: 370 DEERRERSPEGPREEEA-AGGEEESPDSSPHGEASRGAAEPEAQLSNHLAEE--GPAEGS 426
Query: 360 GPHRLV--RREDGAAGD 374
G V RREDG A +
Sbjct: 427 GEAARVNGRREDGEASE 443
>gi|145701005 hypothetical protein LOC375759 [Homo sapiens]
Length = 431
Score = 30.8 bits (68), Expect = 2.4
Identities = 38/124 (30%), Positives = 48/124 (38%), Gaps = 27/124 (21%)
Query: 312 AAW----EAKAG-GCGR-GPEWSAARRASREAVEKE-------------LGALQQCWERD 352
AAW +AK G G GR P A A+R AV K GA ++ R
Sbjct: 59 AAWWPEGDAKPGVGVGRLPPRLPALLTATRRAVRKRGLLRSLLPPPLLSAGASRESAPRQ 118
Query: 353 GGPAQPHGPHRLVRREDGAAGDRDLRAAVVIRTLRSQEACLEAVLRRLQGQCRQELARLV 412
GP + P R V RE D D A + L S+ L +LQ +C +E L
Sbjct: 119 PGPGERERPRRRVARE-----DPDFLGAFLGELLPSR---FREFLHQLQEKCAEEPEPLT 170
Query: 413 GARP 416
P
Sbjct: 171 SPAP 174
>gi|23238194 tumor necrosis factor receptor superfamily, member 18
isoform 2 precursor [Homo sapiens]
Length = 255
Score = 30.4 bits (67), Expect = 3.2
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 308 ERRRAAWEAKAGGCGR--GPEWSA--------ARRASREAVEKELGALQQCWERDGGPAQ 357
+RRR WE GR GP +A A A R A+ + L QQ W ++GG Q
Sbjct: 160 QRRRGGWETCGCEPGRPPGPPTAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQ 219
Query: 358 PHGP 361
GP
Sbjct: 220 RPGP 223
>gi|55743108 ATG16 autophagy related 16-like 2 [Homo sapiens]
Length = 619
Score = 30.4 bits (67), Expect = 3.2
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 286 GGELDLVVRELQALEEELREAAERRRAAWEAKAGGCGRGPEWSAA---RRASREAVEKEL 342
G L + ELQ + L R EA+A + EW A +RA+ EA+ +
Sbjct: 115 GAALGTLESELQQRQSRLAALEARVAQLREARAQQAQQVEEWRAQNAVQRAAYEALRAHV 174
Query: 343 GALQQCWERDGGPAQPHGPHRLVRREDGAAGDRDLR 378
G + R A+ RLV+R+ AA +R+LR
Sbjct: 175 GLREAALRRLQEEARDL-LERLVQRKARAAAERNLR 209
>gi|126032348 hect domain and RLD 2 [Homo sapiens]
Length = 4834
Score = 30.0 bits (66), Expect = 4.2
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 64 LPAGNALASLALEVQARLVKSALCSQGYPR-----LALAQLPEDGSQGSRELLLALSWLL 118
L AG AL S +++ L + A+ G + L + +G + ++ L LL
Sbjct: 2326 LKAGRALLSHQDKLRQILSQPAVQETGTVHTDDGAVVSPDLGDMSPEGPQPPMILLQQLL 2385
Query: 119 ARG--PVPEQMLAQARVPLGDEMTVCQCEALASPGPPAP------HMEAEGPVDVRHVQ 169
A P P + + + + VCQC A+ S P +P EA PV V+H++
Sbjct: 2386 ASATQPSPVKAIFDKQELEAAALAVCQCLAVESTHPSSPGFEDCSSSEATTPVAVQHIR 2444
>gi|122937223 NOBOX oogenesis homeobox [Homo sapiens]
Length = 490
Score = 30.0 bits (66), Expect = 4.2
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 225 GGQQLLRTLERENQRLEAVLAWRRSELVFWRWMDTVLGTCAPEVPAA--------ASQPT 276
GG + TLE +++R W ++ WR M+ + G + + PAA +S
Sbjct: 330 GGGPTIETLELQSERSAVAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAE 389
Query: 277 FLPWVP 282
LP VP
Sbjct: 390 ILPAVP 395
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,197,814
Number of Sequences: 37866
Number of extensions: 939556
Number of successful extensions: 3710
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 3634
Number of HSP's gapped (non-prelim): 119
length of query: 426
length of database: 18,247,518
effective HSP length: 105
effective length of query: 321
effective length of database: 14,271,588
effective search space: 4581179748
effective search space used: 4581179748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.