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Search of human proteins with 19923748
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923748 dihydrolipoamide S-succinyltransferase (E2
component of 2-oxo-glutarate complex) [Homo sapiens]
(453 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923748 dihydrolipoamide S-succinyltransferase (E2 component... 894 0.0
gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens] 158 8e-39
gi|203098753 pyruvate dehydrogenase complex, component X isoform... 148 9e-36
gi|110671329 dihydrolipoamide branched chain transacylase precur... 145 1e-34
gi|203098816 pyruvate dehydrogenase complex, component X isoform... 143 4e-34
gi|33356148 formin-like 1 [Homo sapiens] 60 5e-09
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 49 7e-06
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 49 1e-05
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom... 49 1e-05
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ... 49 1e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 49 1e-05
gi|163965366 nascent polypeptide-associated complex alpha subuni... 48 2e-05
gi|55741677 SET domain containing 1A [Homo sapiens] 47 4e-05
gi|21071077 dishevelled-associated activator of morphogenesis 1 ... 47 5e-05
gi|110349719 titin isoform N2-A [Homo sapiens] 46 6e-05
gi|118402590 myosin XV [Homo sapiens] 46 6e-05
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s... 46 6e-05
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s... 46 6e-05
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ... 46 6e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 46 6e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 46 8e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 46 8e-05
gi|145386517 phostensin [Homo sapiens] 46 8e-05
gi|199559805 phostensin [Homo sapiens] 46 8e-05
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 46 8e-05
gi|52485606 formin-like 2 [Homo sapiens] 45 1e-04
gi|154146199 sal-like 3 [Homo sapiens] 45 1e-04
gi|239752280 PREDICTED: similar to family with sequence similari... 45 1e-04
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 45 1e-04
gi|11386183 WAS protein family, member 2 [Homo sapiens] 45 1e-04
>gi|19923748 dihydrolipoamide S-succinyltransferase (E2 component of
2-oxo-glutarate complex) [Homo sapiens]
Length = 453
Score = 894 bits (2309), Expect = 0.0
Identities = 453/453 (100%), Positives = 453/453 (100%)
Query: 1 MLSRSRCVSRAFSRSLSAFQKGNCPLGRRSLPGVSLCQGPGYPNSRKVVINNSVFSVRFF 60
MLSRSRCVSRAFSRSLSAFQKGNCPLGRRSLPGVSLCQGPGYPNSRKVVINNSVFSVRFF
Sbjct: 1 MLSRSRCVSRAFSRSLSAFQKGNCPLGRRSLPGVSLCQGPGYPNSRKVVINNSVFSVRFF 60
Query: 61 RTTAVCKDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPAN 120
RTTAVCKDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPAN
Sbjct: 61 RTTAVCKDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPAN 120
Query: 121 GVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPI 180
GVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPI
Sbjct: 121 GVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPI 180
Query: 181 PTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKE 240
PTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKE
Sbjct: 181 PTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKE 240
Query: 241 AQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNA 300
AQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNA
Sbjct: 241 AQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNA 300
Query: 301 VIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELA 360
VIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELA
Sbjct: 301 VIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELA 360
Query: 361 IEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVAL 420
IEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVAL
Sbjct: 361 IEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAIGGKVEVRPMMYVAL 420
Query: 421 TYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 453
TYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL
Sbjct: 421 TYDHRLIDGREAVTFLRKIKAAVEDPRVLLLDL 453
>gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]
Length = 647
Score = 158 bits (400), Expect = 8e-39
Identities = 128/431 (29%), Positives = 197/431 (45%), Gaps = 56/431 (12%)
Query: 73 VKTPAFAESVTEGDV-RWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDG 131
V PA + ++T G V RWEK VG+ ++E +++ EIETDK ++ G + +LVP+G
Sbjct: 221 VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEG 280
Query: 132 GK-VEGGTPLFTLRKTGA---APAKAKPAEAP---AAAAPKAEPTAAAVPPPAAPI-PTQ 183
+ V GTPL + + A A A +P E P P AAVPP P+ PT
Sbjct: 281 TRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQVPPPTPPPVAAVPPTPQPLAPTP 340
Query: 184 MPPVPSPSQPPSGK----------------PVSAVKPT--------------------VA 207
P P+ P G+ ++ VK T A
Sbjct: 341 SAPCPATPAGPKGRVFVSPLAKKLAVEKGIDLTQVKGTGPDGRITKKDIDSFVPSKVAPA 400
Query: 208 PPLAEPGAGKGLRSEHRE-----KMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEM 262
P P G G+ ++ +R+ IAQRL +++ T +++M + +
Sbjct: 401 PAAVVPPTGPGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLV 460
Query: 263 RARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVA 322
R + + + K+ +KASA A + P N+ DT + +D+SVAV+
Sbjct: 461 RKELNK--ILEGRSKISVNDFIIKASALACLKVPEANSSWMDTV--IRQNHVVDVSVAVS 516
Query: 323 TPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELAIEDMDGGTFTISNGGVFGSLFG 382
TP GL+ P++ N I + L KAR+ +L + GGTFTISN G+FG
Sbjct: 517 TPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF 576
Query: 383 TPIINPPQSAILGMHGIFDRPVAIGGK--VEVRPMMYVALTYDHRLIDGREAVTFLRKIK 440
+ IINPPQ+ IL + D+ V + +V MM V L+ DHR++DG +L + +
Sbjct: 577 SAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFR 636
Query: 441 AAVEDPRVLLL 451
+E P +LL
Sbjct: 637 KYLEKPITMLL 647
Score = 55.8 bits (133), Expect = 8e-08
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 73 VKTPAFAESVTEGDV-RWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDG 131
V P+ + ++ G + RWEK GD + E +++ E+ETDK +V S + +LV +G
Sbjct: 94 VPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 153
Query: 132 GK--VEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPS 189
+ G T+ K A K ++AAP P AA P PAA T PP PS
Sbjct: 154 TRDVPIGAIICITVGKPEDIEA-FKNYTLDSSAAP--TPQAAPAPTPAA---TASPPTPS 207
Query: 190 PSQPPSGKP--VSAVKPTVAPPL 210
P S P + + P ++P +
Sbjct: 208 AQAPGSSYPPHMQVLLPALSPTM 230
>gi|203098753 pyruvate dehydrogenase complex, component X isoform 1
[Homo sapiens]
Length = 501
Score = 148 bits (374), Expect = 9e-36
Identities = 126/468 (26%), Positives = 214/468 (45%), Gaps = 93/468 (19%)
Query: 58 RFFRTTAVCKDDLVTVKTPAFAESVTEGD-VRWEKAVGDTVAEDEVVCEIETDKTSVQVP 116
R+F +T + D + + P+ + ++ EG+ V+W K G+ V+ + +CEIETDK V +
Sbjct: 44 RWFHSTQWLRGDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLD 103
Query: 117 SPANGVIEALLVPDGGK-----------VEGGTP---LFTLRKTGAAPAKAKPAEAPAAA 162
+ +G++ ++V +G K VE G + + G P +KP+E
Sbjct: 104 ASDDGILAKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSE----P 159
Query: 163 APKAEPTAAAVPPPAAPIP----------------------------------------- 181
P EP ++P IP
Sbjct: 160 RPSPEP-QISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALK 218
Query: 182 ----------TQMPPVPSPSQPPSG-KPVSAV-----KPTVAPPLAEPGAGKGLRSEHRE 225
T+ P P+P+ P+ P+ A V PP++ PG + +
Sbjct: 219 LVQLKQTGKITESRPTPAPTATPTAPSPLQATAGPSYPRPVIPPVSTPGQPNAVGTFTEI 278
Query: 226 KMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFV 285
+ +R+ IA+RL E+++T + D+ + ++R L K ++K+ +
Sbjct: 279 PASNIRRVIAKRLTESKSTVPHAYATADCDLGAVLKVRQD-----LVKDDIKVSVNDFII 333
Query: 286 KASAFALQEQPVVNAVIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIER 345
KA+A L++ P VN D + + +IDISVAVAT +GL+ P+I++ A +I
Sbjct: 334 KAAAVTLKQMPDVNVSWDGEGPKQL--PFIDISVAVATDKGLLTPIIKDAAAKGIQEIAD 391
Query: 346 TITELGEKARKNELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVA 405
++ L +KAR +L E+ GG+F+ISN G+FG T +INPPQ+ IL + G F RPV
Sbjct: 392 SVKALSKKARDGKLLPEEYQGGSFSISNLGMFGIDEFTAVINPPQACILAV-GRF-RPVL 449
Query: 406 I-------GGKVEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDP 446
K++ R ++ V ++ D R++D A FL+ KA +E+P
Sbjct: 450 KLTEDEEGNAKLQQRQLITVTMSSDSRVVDDELATRFLKSFKANLENP 497
>gi|110671329 dihydrolipoamide branched chain transacylase precursor
[Homo sapiens]
Length = 482
Score = 145 bits (365), Expect = 1e-34
Identities = 118/445 (26%), Positives = 190/445 (42%), Gaps = 66/445 (14%)
Query: 59 FFRTTAVCKDDLVTVKTPAFAESVTEGDVR-WEKAVGDTVAEDEVVCEIETDKTSVQVPS 117
F +TTA + +V K E + E V+ W GDTV++ + +CE+++DK SV + S
Sbjct: 53 FLKTTAALRGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITS 112
Query: 118 PANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAA---------------- 161
+GVI+ L G PL + ++ E PA
Sbjct: 113 RYDGVIKKLYYNLDDIAYVGKPLVDIETEALKDSEEDVVETPAVSHDEHTHQEIKGRKTL 172
Query: 162 AAPKA--------------------------------EPTAAAVPPPAAPIPTQMPPVPS 189
A P E A+ PP+ + MPP P
Sbjct: 173 ATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSPKVEI-MPPPPK 231
Query: 190 PSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLT 249
P P+ KP V + KG Q+ + A
Sbjct: 232 PKDMTV--PILVSKPPVFTGKDKTEPIKGF------------QKAMVKTMSAALKIPHFG 277
Query: 250 TFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEV 309
+EID++ + ++R K + +KL FM F+KA++ L + P++NA +D+ + +
Sbjct: 278 YCDEIDLTELVKLREELKPIAFAR-GIKLSFMPFFLKAASLGLLQFPILNASVDENCQNI 336
Query: 310 VYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARKNELAIEDMDGGTF 369
Y+ +I +A+ T +GL+VP ++NV+ + DI + L + ++L+ D+ GGTF
Sbjct: 337 TYKASHNIGIAMDTEQGLIVPNVKNVQICSIFDIATELNRLQKLGSVSQLSTTDLTGGTF 396
Query: 370 TISNGGVFGSLFGTPIINPPQSAILGMHGIFDRP-VAIGGKVEVRPMMYVALTYDHRLID 428
T+SN G G F P+I PP+ AI + I P G+V +M V+ + DHR+ID
Sbjct: 397 TLSNIGSIGGTFAKPVIMPPEVAIGALGSIKAIPRFNQKGEVYKAQIMNVSWSADHRVID 456
Query: 429 GREAVTFLRKIKAAVEDPRVLLLDL 453
G F K+ +E+P +LLDL
Sbjct: 457 GATMSRFSNLWKSYLENPAFMLLDL 481
>gi|203098816 pyruvate dehydrogenase complex, component X isoform 2
[Homo sapiens]
Length = 486
Score = 143 bits (360), Expect = 4e-34
Identities = 123/457 (26%), Positives = 208/457 (45%), Gaps = 93/457 (20%)
Query: 69 DLVTVKTPAFAESVTEGD-VRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALL 127
D + + P+ + ++ EG+ V+W K G+ V+ + +CEIETDK V + + +G++ ++
Sbjct: 40 DPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 99
Query: 128 VPDGGK-----------VEGGTP---LFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAV 173
V +G K VE G + + G P +KP+E P EP ++
Sbjct: 100 VEEGSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKPSE----PRPSPEP-QISI 154
Query: 174 PPPAAPIP---------------------------------------------------T 182
P IP T
Sbjct: 155 PVKKEHIPGTLRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQLKQTGKIT 214
Query: 183 QMPPVPSPSQPPSG-KPVSAV-----KPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQ 236
+ P P+P+ P+ P+ A V PP++ PG + + + +R+ IA+
Sbjct: 215 ESRPTPAPTATPTAPSPLQATAGPSYPRPVIPPVSTPGQPNAVGTFTEIPASNIRRVIAK 274
Query: 237 RLKEAQNTCAMLTTFNEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQP 296
RL E+++T + D+ + ++R L K ++K+ +KA+A L++ P
Sbjct: 275 RLTESKSTVPHAYATADCDLGAVLKVRQD-----LVKDDIKVSVNDFIIKAAAVTLKQMP 329
Query: 297 VVNAVIDDTTKEVVYRDYIDISVAVATPRGLVVPVIRNVEAMNFADIERTITELGEKARK 356
VN D + + +IDISVAVAT +GL+ P+I++ A +I ++ L +KAR
Sbjct: 330 DVNVSWDGEGPKQL--PFIDISVAVATDKGLLTPIIKDAAAKGIQEIADSVKALSKKARD 387
Query: 357 NELAIEDMDGGTFTISNGGVFGSLFGTPIINPPQSAILGMHGIFDRPVAI-------GGK 409
+L E+ GG+F+ISN G+FG T +INPPQ+ IL + G F RPV K
Sbjct: 388 GKLLPEEYQGGSFSISNLGMFGIDEFTAVINPPQACILAV-GRF-RPVLKLTEDEEGNAK 445
Query: 410 VEVRPMMYVALTYDHRLIDGREAVTFLRKIKAAVEDP 446
++ R ++ V ++ D R++D A FL+ KA +E+P
Sbjct: 446 LQQRQLITVTMSSDSRVVDDELATRFLKSFKANLENP 482
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 59.7 bits (143), Expect = 5e-09
Identities = 58/201 (28%), Positives = 77/201 (38%), Gaps = 30/201 (14%)
Query: 84 EGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPS----PANGVIEALLVPDGGKVEGGTP 139
+G +R + GD V+ IE +V PS P GV PD P
Sbjct: 486 KGLIRILRGPGDAVS-------IEILPVAVATPSGGDAPTPGVPTGSPSPDLAPAAEPAP 538
Query: 140 LFTLRKTGAAPAKAKPAEAPAAAAPKAEP-TAAAVPPPAAPIPTQMPPVPSPSQPPSGK- 197
P P EAP +A P+A P + PPPA P+P +PP P P PP G
Sbjct: 539 GAAPPPPPPLPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTD 598
Query: 198 -PVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQR----------LKEAQNTCA 246
PV P PP P G R + ++ I + LK +Q T
Sbjct: 599 GPVPPPPPPPPPPPGGPPDALGRRDSELGPGVKAKKPIQTKFRMPLLNWVALKPSQITGT 658
Query: 247 MLTTFN------EIDMSNIQE 261
+ T N E+DMS+ +E
Sbjct: 659 VFTELNDEKVLQELDMSDFEE 679
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 49.3 bits (116), Expect = 7e-06
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 150 PAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPP 209
PA++ P+ P + P P A PPP P P P+P PP+ +P P
Sbjct: 1389 PARSPPSRQPPSGGPPEAPPAQPPPPPPPPPPPPQQPLP---PPPNLEPAPPSLGDPGEP 1445
Query: 210 LAEPGAGKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKEA 269
A PG G S E + + +R K + + E+D I R RH++
Sbjct: 1446 AAHPGPSTG-PSTKNENVATLSVSSLERRK---------SRYAELDFEKIMHTRKRHQDM 1495
Query: 270 F 270
F
Sbjct: 1496 F 1496
>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 48.5 bits (114), Expect = 1e-05
Identities = 37/83 (44%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPA-APIPTQMP-------PVPSPSQPPSGKPVS 200
APA A PA AP AA P A P A AV PA AP P P P P+P+ P+ P
Sbjct: 144 APAPA-PAPAPVAA-PVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAP 201
Query: 201 AVKPTVAP-PLAEPGAGKGLRSE 222
A P AP AE GA +G R +
Sbjct: 202 APAPDAAPQESAEQGANQGQRGQ 224
>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
sapiens]
Length = 305
Score = 48.5 bits (114), Expect = 1e-05
Identities = 37/83 (44%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPA-APIPTQMP-------PVPSPSQPPSGKPVS 200
APA A PA AP AA P A P A AV PA AP P P P P+P+ P+ P
Sbjct: 144 APAPA-PAPAPVAA-PVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAP 201
Query: 201 AVKPTVAP-PLAEPGAGKGLRSE 222
A P AP AE GA +G R +
Sbjct: 202 APAPDAAPQESAEQGANQGQRGQ 224
>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
sapiens]
Length = 316
Score = 48.5 bits (114), Expect = 1e-05
Identities = 37/83 (44%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPA-APIPTQMP-------PVPSPSQPPSGKPVS 200
APA A PA AP AA P A P A AV PA AP P P P P+P+ P+ P
Sbjct: 155 APAPA-PAPAPVAA-PVAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAP 212
Query: 201 AVKPTVAP-PLAEPGAGKGLRSE 222
A P AP AE GA +G R +
Sbjct: 213 APAPDAAPQESAEQGANQGQRGQ 235
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 48.5 bits (114), Expect = 1e-05
Identities = 35/92 (38%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 125 ALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQM 184
A L+P GT + T GAA A A +P AA A P AA PPP AP
Sbjct: 223 AALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLAR 282
Query: 185 PPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAG 216
PP P+G P +A P V PP A G
Sbjct: 283 PP-----GHPAGPPTAA--PAVPPPAAAQNGG 307
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/73 (41%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 148 AAPAKAKPAEAPAAAAPKAEPTAAAVPP--PAAPIPTQMPPVPSPSQPPSGKPVSAVKPT 205
AAPA A PA AP P P A PP PA P PT P VP P+ +G A P
Sbjct: 259 AAPAPAAPAAAP--PPPPPAPATLARPPGHPAGP-PTAAPAVPPPAAAQNGGSAGAA-PA 314
Query: 206 VAPPLAEPGAGKG 218
AP P G
Sbjct: 315 PAPAAGGPAGVSG 327
Score = 35.4 bits (80), Expect = 0.11
Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 131 GGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSP 190
G V G+P GA PA PAE AAP+ P A P P Q P PSP
Sbjct: 59 GNHVVSGSPAGA---AGAGPAA--PAEGAPGAAPEPPPAGRARPGGGGP---QRPGPPSP 110
Query: 191 SQP--PSG--KPVSAVKPTVAPPLAEPGA 215
+P P+G P + ++P PP G+
Sbjct: 111 RRPLVPAGPAPPAAKLRP---PPEGSAGS 136
Score = 35.0 bits (79), Expect = 0.14
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 148 AAPAKAKPAEAPAAAA-------PKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVS 200
AAPA A P PA A P PTAA PP A +P+ P+ +
Sbjct: 264 AAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPA 323
Query: 201 AVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRL 238
V P A G+++E +++ + AQ L
Sbjct: 324 GVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTL 361
Score = 33.1 bits (74), Expect = 0.53
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 118 PANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPA 177
PA A VP + G GAAPA A A PA + + P AAA PA
Sbjct: 287 PAGPPTAAPAVPPPAAAQNGG------SAGAAPAPAPAAGGPAGVSGQPGPGAAAA-APA 339
Query: 178 APIPTQMPPVPSPSQPPSGKPVSAVKP 204
+ + P + PP+ + ++A P
Sbjct: 340 PGVKAESPKRVVQAAPPAAQTLAASGP 366
Score = 32.7 bits (73), Expect = 0.69
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 142 TLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPP------VPSPSQPPS 195
TL +G A A P A P+ AAVPPPA PT +P S S+ P+
Sbjct: 360 TLAASGPASTAASMVIGPTMQG--ALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPT 417
Query: 196 GKPVSAVKPTVAPPLAEP 213
S ++ T+ P + P
Sbjct: 418 A-TTSGIRATLTPTVLAP 434
Score = 31.2 bits (69), Expect = 2.0
Identities = 29/104 (27%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 116 PSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPP 175
PSP ++ A P K+ + A PA A AA P+ P A P
Sbjct: 108 PSPRRPLVPAGPAPPAAKLRPPP------EGSAGSCAPVPAAAAVAAGPEPAPAGPAKPA 161
Query: 176 PAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGL 219
A + + P P P P P KP A PGA + L
Sbjct: 162 GPAALAARAGPGPGPGPGPGPGP-GPGKP------AGPGAAQTL 198
Score = 30.0 bits (66), Expect = 4.5
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 148 AAPAKAKPAEAPA----AAAPKAEPTAAAVPPPAAPI----PTQMPPVPSPSQPPSGKP 198
AAPA AE+P AA P A+ AA+ P A PT +PSP+ P P
Sbjct: 336 AAPAPGVKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAP 394
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 47.8 bits (112), Expect = 2e-05
Identities = 38/112 (33%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 116 PSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPT-AAAVP 174
PSP P K TP T A P PA +PK PT AA P
Sbjct: 934 PSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATP 993
Query: 175 P-----PAAPIPTQMPPVPSPSQP-PSGKPVSAVKPTVA--PPLAEPGAGKG 218
P PA P P P P+ + P P G P + P A PP A P + KG
Sbjct: 994 PSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKG 1045
Score = 44.3 bits (103), Expect = 2e-04
Identities = 34/117 (29%), Positives = 38/117 (32%), Gaps = 8/117 (6%)
Query: 110 KTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPT 169
K + PSP P K TP T A P PA PK PT
Sbjct: 1206 KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPT 1265
Query: 170 AAAVPPPAAPIPTQMPP--------VPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKG 218
A PP+ PP V +P P G S K PP A P + KG
Sbjct: 1266 PPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKG 1322
Score = 41.2 bits (95), Expect = 0.002
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 150 PAKAKPAEAPAAAAPKAEPTAAAVPP-----PAAPIP--TQMPPVPSPSQPPSGKPVSAV 202
PA P +APA + + P A P PA+P P PP +P P G +
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSP 959
Query: 203 KPTVAPPLAEPGAGKG 218
K PP A P + KG
Sbjct: 960 KWAPTPPAATPPSPKG 975
Score = 40.8 bits (94), Expect = 0.003
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 20/118 (16%)
Query: 117 SPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAK----PAEAPAAAAPKAEPTAAA 172
+P V+ +G L T ++P KA+ P PA+ +PK PT A
Sbjct: 885 TPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPA 944
Query: 173 VPPP------------AAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKG 218
PP AP PP +P P G + K PP A P + KG
Sbjct: 945 ATPPSPKGGPATPSPKWAP----TPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKG 998
Score = 40.4 bits (93), Expect = 0.003
Identities = 36/114 (31%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 116 PSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPP 175
PSP P K TP T A P PA +PK PT AV P
Sbjct: 957 PSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTP 1016
Query: 176 P-------AAPIP--TQMPPV---PSPSQPPSGKPVSAVKPTV-APPLAEPGAG 216
P A P P PP PSP P+ P+ PT A L P G
Sbjct: 1017 PSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGG 1070
Score = 40.0 bits (92), Expect = 0.004
Identities = 35/105 (33%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 116 PSPANGVIEALLVPDGGKVEGGTPLFTLR--KTGAAPAKAKPAEAPAAAAPKAEPTAAAV 173
PSP G A +P G TP TL K G A K A P AA P + A
Sbjct: 1041 PSP-KGSPAATPLPKGAPT---TPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPAT 1096
Query: 174 PPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKG 218
P P MPP +P P G K P A P + KG
Sbjct: 1097 PSPKG---APMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKG 1138
Score = 40.0 bits (92), Expect = 0.004
Identities = 33/117 (28%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 110 KTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPT 169
K + P P P K TP T A P A +PK PT
Sbjct: 1160 KGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPT 1219
Query: 170 AAAVPPP------AAPIPTQMP--PVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKG 218
A PP A P P P P +P P G K PP A P + KG
Sbjct: 1220 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKG 1276
Score = 39.7 bits (91), Expect = 0.006
Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 5/108 (4%)
Query: 110 KTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPT 169
K S P P + P K GTP + P+ P A P+
Sbjct: 1321 KGSPGTPPPKGAPTPPAVTPPSPK---GTPTLPATTPSSKGGPTTPSSKEGPTPPAATPS 1377
Query: 170 AAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAP--PLAEPGA 215
P P P + P +PSP P+ V + P AP P+ GA
Sbjct: 1378 HKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGA 1425
Score = 39.7 bits (91), Expect = 0.006
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 18/116 (15%)
Query: 110 KTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAK---AKPA-------EAP 159
K +PSP ++P K TP+ R+ A P+K PA +AP
Sbjct: 1390 KRGPAIPSPKGDPTSPAVIPLSPKKAPATPV--TREGAATPSKGDLTPPAVTPVSLKKAP 1447
Query: 160 AAAAPKAEP-TAAAVPPPAAPIPTQMPPVPSPSQPPSGKPV-SAVKPTVAPPLAEP 213
A +APK P T ++ P P T PSP +PP+ K V ++ P AP P
Sbjct: 1448 ATSAPKGGPATPSSKGDPTLPAVTP----PSPKEPPAPKQVATSSSPKKAPATPAP 1499
Score = 39.3 bits (90), Expect = 0.007
Identities = 32/111 (28%), Positives = 36/111 (32%), Gaps = 8/111 (7%)
Query: 116 PSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPP 175
PSP + P K TP T A P A PK PT A P
Sbjct: 1097 PSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATP 1156
Query: 176 P------AAPIPTQMP--PVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKG 218
P A P P P P +P P G + K P A P + KG
Sbjct: 1157 PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1207
Score = 37.7 bits (86), Expect = 0.022
Identities = 32/117 (27%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 110 KTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPT 169
K + P P P K TP T A P A +PK PT
Sbjct: 1137 KGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPT 1196
Query: 170 AAAVPPP------AAPIPTQMP--PVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKG 218
A PP A P P P P +P P G + K P A P + KG
Sbjct: 1197 TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1253
Score = 37.7 bits (86), Expect = 0.022
Identities = 27/100 (27%), Positives = 31/100 (31%)
Query: 110 KTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPT 169
K + PSP P K TP T A P A +PK PT
Sbjct: 1183 KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPT 1242
Query: 170 AAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPP 209
A PP+ PP PP+ P S PP
Sbjct: 1243 TPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPP 1282
Score = 37.7 bits (86), Expect = 0.022
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPA---APIPTQMPPVPSPSQPPSGKPVSAVKPT 205
APA + P PA + K +PT AV PP+ P P Q+ SP + P+ P PT
Sbjct: 1446 APATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPA-TPAPMGAPT 1504
Query: 206 VAPPLAEPGAGK 217
+ P P + K
Sbjct: 1505 L--PAVIPSSPK 1514
Score = 37.4 bits (85), Expect = 0.028
Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 26/121 (21%)
Query: 116 PSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVP- 174
PSP + P K G+P T GA+ PA P + PK P A +P
Sbjct: 1003 PSPKGAPTPPAVTPPSPK---GSPAATPFPKGAS---TPPAATPPS--PKGSPAATPLPK 1054
Query: 175 ----PPAAPIPT-------------QMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGK 217
PAA +P+ PP +P P G + K PP A P + K
Sbjct: 1055 GAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPK 1114
Query: 218 G 218
G
Sbjct: 1115 G 1115
Score = 37.0 bits (84), Expect = 0.037
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 139 PLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPP---PAAPIPTQM---PPVPSPSQ 192
P T+ PA P EAPA + K + AV P AP P ++ P V SPS
Sbjct: 1551 PAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSP 1610
Query: 193 PPSGKPVSAVKPTVAPPLAEPG 214
+ P P V PP E G
Sbjct: 1611 KEAPTP-----PAVTPPSPEKG 1627
Score = 36.6 bits (83), Expect = 0.048
Identities = 36/126 (28%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 106 IETDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAP- 164
+ + K + +P+P EA P K P T AP+ + PA +P
Sbjct: 1555 VPSPKKTPAIPTPK----EAPATPSS-KEASSPPAVTPSTYKGAPSPKELLIPPAVTSPS 1609
Query: 165 -KAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPV--SAVKPTVAPPLA--------EP 213
K PT AV PP+ P + P P+P P+ PV S++K + P + P
Sbjct: 1610 PKEAPTPPAVTPPS---PEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVP 1666
Query: 214 GAGKGL 219
A KGL
Sbjct: 1667 QASKGL 1672
Score = 36.2 bits (82), Expect = 0.063
Identities = 31/104 (29%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 116 PSPANGVIEALLVPDGGKVEGG-TPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVP 174
PSP G A P G TP A P + PAA P + + AA P
Sbjct: 994 PSPKGG--PATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATP 1051
Query: 175 PPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKG 218
P T +PSP G ++K PP A P + KG
Sbjct: 1052 LPKGAPTTPAATLPSPK---GGPATPSLKGAPTPPAATPPSPKG 1092
Score = 35.8 bits (81), Expect = 0.082
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 145 KTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPP-AAPIPTQM-PPVPS-----PSQPPSGK 197
K G A + K A P AA P + + PPP AP P + PP P P+ PS K
Sbjct: 1298 KGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSK 1357
Query: 198 -----PVSAVKPTVAPPLAEP 213
P S PT PP A P
Sbjct: 1358 GGPTTPSSKEGPT--PPAATP 1376
Score = 35.0 bits (79), Expect = 0.14
Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 145 KTGAAPAKAKPAEAPAAAAPKAEPTAAAVPP--PAAPIPTQMPPVPS---PSQPPSGKPV 199
K G A K A P AA P + A PP A P PP P + PP G P
Sbjct: 1091 KGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPT 1150
Query: 200 SAVKPTVAPPLAEPG 214
+ P PP + G
Sbjct: 1151 T---PAATPPSPKGG 1162
Score = 35.0 bits (79), Expect = 0.14
Identities = 26/95 (27%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 116 PSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPP 175
P P P K TP A P PA + PK PT A P
Sbjct: 1258 PPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATP 1317
Query: 176 PAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPL 210
P+ P P P P P+ V+ P P L
Sbjct: 1318 PS---PKGSPGTPPPKGAPTPPAVTPPSPKGTPTL 1349
Score = 34.3 bits (77), Expect = 0.24
Identities = 28/75 (37%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 145 KTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPP-AAPIPTQMPPVPSPSQPPSGKPVSAVK 203
K G A K A PA P + A PP AP P P PSP P G P
Sbjct: 1275 KGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATP-PSPKGSP-GTPPPKGA 1332
Query: 204 PTVAPPLAEPGAGKG 218
PT PP P + KG
Sbjct: 1333 PT--PPAVTPPSPKG 1345
Score = 32.3 bits (72), Expect = 0.91
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 22/88 (25%)
Query: 153 AKPAEAPAAAAPKAEPTA------------------AAVPPP-AAPIPTQMPPVPSPSQP 193
+ P E PA + + +P A A +PP P P + P +P+P +
Sbjct: 1511 SSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEA 1570
Query: 194 PSGKPVSAVKPTVAPPLAEPGAGKGLRS 221
P+ + K +PP P KG S
Sbjct: 1571 PA---TPSSKEASSPPAVTPSTYKGAPS 1595
Score = 32.0 bits (71), Expect = 1.2
Identities = 28/101 (27%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 125 ALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKA-----EPTAAAVPPPAAP 179
A+ VP K TP K A +K A +P A P P +PP
Sbjct: 1552 AMTVPSPKK----TPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTS 1607
Query: 180 IPTQMPPVPSPSQPPS---GKPVSAVKPTVAPPLAEPGAGK 217
+ P P PPS G A K T P P + K
Sbjct: 1608 PSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLK 1648
Score = 31.6 bits (70), Expect = 1.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 153 AKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPP 194
+ P +APA AP PT AV P + P ++P PS + P
Sbjct: 1488 SSPKKAPATPAPMGAPTLPAVIPSS---PKEVPATPSSRRDP 1526
Score = 30.4 bits (67), Expect = 3.4
Identities = 44/188 (23%), Positives = 62/188 (32%), Gaps = 51/188 (27%)
Query: 135 EGGTPLFTLRKTGAAPAKA--KPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPS--- 189
+ TPL T AA K KP A +AAP + P P +P + +PS
Sbjct: 1768 KASTPL-----TAAAFEKVLPKPESASVSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPG 1822
Query: 190 ----------------------PSQPPSG------------KPVSAVKPTVAP----PLA 211
P +P SG P SA P P P+
Sbjct: 1823 LVLESPSKPLAPADEDELLPLIPPEPISGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPVT 1882
Query: 212 EPGAGKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMRARHKEAFL 271
+ G G S+ E + + + Q +A A L EID + + + E
Sbjct: 1883 KNNKGSGTESDSDESVPELEE---QDSTQATTQQAQLAAAAEIDEEPVSKAKQSRSEKKA 1939
Query: 272 KKHNLKLG 279
+K KLG
Sbjct: 1940 RKAMSKLG 1947
Score = 29.3 bits (64), Expect = 7.7
Identities = 43/165 (26%), Positives = 58/165 (35%), Gaps = 28/165 (16%)
Query: 73 VKTPAFAESVTEGDVRWEKAVGDTVAE------DEVVCEIETDKTSVQVPSPANGVIEAL 126
+KT ++A + G + + TVA D T K + + A+ +E
Sbjct: 621 IKTDSYAGPDSAGPLLKSSLITPTVAAFPLESADPAGVAPTTAKGTSTYTTTASPFLEGT 680
Query: 127 --LVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQM 184
L P V+ GT L TL A A +P P A V P P
Sbjct: 681 VSLAPKNHPVKEGT-LTTLPLVPTASENCPVAPSPQNTCA---PLATLVLAPEIP----- 731
Query: 185 PPVPSPSQPPSGKP-----------VSAVKPTVAPPLAEPGAGKG 218
VPSPS PP+G P SA+ P + P P G
Sbjct: 732 KSVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSG 776
Score = 29.3 bits (64), Expect = 7.7
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 151 AKAKPA--EAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAP 208
+K PA +P +PK PT +AV P +P +PP +P+ P P
Sbjct: 846 SKDSPATTHSPTPPSPKGAPTPSAV-TPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPA 904
Query: 209 PLAEP 213
P P
Sbjct: 905 PKQAP 909
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 47.0 bits (110), Expect = 4e-05
Identities = 38/112 (33%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 114 QVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAK-AKPAEAPAAAAPKAEPTAAA 172
+VP P +E VP +V G+P+ L + A+PA+ A P E +AP P A
Sbjct: 1083 EVPVPTPAPVE---VPVPERV-AGSPVTPLPEQEASPARPAGPTEESPPSAPLRPPEPPA 1138
Query: 173 VPPPAAPIPTQMPPVPSPSQPPSGKPVSAVK-------PTVAPPLAEPGAGK 217
PP AP P + P P P PP K V P PP A P K
Sbjct: 1139 GPPAPAPRPDERPSSPIPLLPPPKKRRKTVSFSAIEVVPAPEPPPATPPQAK 1190
Score = 39.3 bits (90), Expect = 0.007
Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Query: 144 RKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVK 203
R T P +A E P A P AE TA PP + +PP PS +P ++
Sbjct: 378 RHTSYPPRRATREEPPGA--PFAENTAERFPPSYT---SYLPPEPSRPTDQDYRPPASEA 432
Query: 204 PTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTFNEIDMSNIQEMR 263
P PP G G G S RE++ R R A + + A TT + + +
Sbjct: 433 PPPEPPEPGGGGGGGGPSPEREEV-RTSPRPASPAR--SGSPAPETTNESVPFAQHSSLD 489
Query: 264 ARHKEAFLKKHNLKLGFMSA 283
+R E LK+ K F+++
Sbjct: 490 SR-IEMLLKEQRSKFSFLAS 508
Score = 33.9 bits (76), Expect = 0.31
Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 175 PPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPP 209
PP AP P Q PP P P PP P A P PP
Sbjct: 594 PPPAPTPPQQPP-PPPPPPPPPPPYLASLPLGYPP 627
Score = 31.2 bits (69), Expect = 2.0
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 18/77 (23%)
Query: 154 KPAEAPAAAAPKAE-----PTAAAVP-------PPAAPIPTQ-----MPPVPSPSQPPSG 196
+PA P+A+ P E P VP P P+P Q P P+ PPS
Sbjct: 1070 RPAALPSASPPPREVPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTEESPPSA 1129
Query: 197 KPVSAVKPTVAPPLAEP 213
P+ +P PP P
Sbjct: 1130 -PLRPPEPPAGPPAPAP 1145
Score = 30.4 bits (67), Expect = 3.4
Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 159 PAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQP-------PSGKPVSAVKPTVAPP 209
PA P+ P PPP P +P P QP P G P P PP
Sbjct: 596 PAPTPPQQPPPPPPPPPPPPPYLASLPLGYPPHQPAYLLPPRPDGPPPPEYPPPPPPP 653
Score = 29.3 bits (64), Expect = 7.7
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 157 EAPAAAAPKAEPTAAAVPPPAAPIPTQMP-PVPSPSQPPSGKPVSAVKPTVAPPLAEPG 214
E AA P A P PP P+PT P VP P + +G PV+ + A P G
Sbjct: 1068 EERPAALPSASP-----PPREVPVPTPAPVEVPVPER-VAGSPVTPLPEQEASPARPAG 1120
>gi|21071077 dishevelled-associated activator of morphogenesis 1
[Homo sapiens]
Length = 1078
Score = 46.6 bits (109), Expect = 5e-05
Identities = 23/62 (37%), Positives = 28/62 (45%)
Query: 158 APAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGK 217
AP P + P + PPP P+P M P P P PP G P P + + PGA
Sbjct: 535 APGGPFPSSVPGSLLPPPPPPPLPGGMLPPPPPPLPPGGPPPPPGPPPLGAIMPPPGAPM 594
Query: 218 GL 219
GL
Sbjct: 595 GL 596
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 46.2 bits (108), Expect = 6e-05
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 41/188 (21%)
Query: 67 KDDLVTVKTPAFAESVTEGDVRWEKAVGDTVAEDEVVCEIETDK-TSVQVPSPANGVI-- 123
+++++ VK PA V +K V ++E+++ T++ SV VP ++
Sbjct: 9224 QEEVIEVKVPA---------VHTKKMV---ISEEKMFFASHTEEEVSVTVPEVQKEIVTE 9271
Query: 124 EALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAE-APAAAAPKAEPTAAAVPP-PAAPIP 181
E + V +VE K P K P E AP K EP A VP P P+P
Sbjct: 9272 EKIHVAISKRVEPPP------KVPELPEKPAPEEVAPVPIPKKVEPPAPKVPEVPKKPVP 9325
Query: 182 TQMPPVPSPSQPPSGKP----------------VSAVKPTVAPPLAEPGAGKGLRSEHRE 225
+ PVP P + P+ P V K APP P KG+ +E E
Sbjct: 9326 EEKKPVPVPKKEPAAPPKVPEVPKKPVPEEKIPVPVAKKKEAPPAKVPEVQKGVVTE--E 9383
Query: 226 KMNRMRQR 233
K+ + QR
Sbjct: 9384 KITIVTQR 9391
Score = 39.7 bits (91), Expect = 0.006
Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Query: 115 VPSPANGVIEALLVPD-GGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAV 173
VP P VP+ K E P+ +K PAK E P P+ E V
Sbjct: 9965 VPVPKKKEAPPAKVPEVPKKPEEKVPVLIPKKEKPPPAKVP--EVPKKPVPE-EKVPVPV 10021
Query: 174 PPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHRE 225
P P ++P VP P PV A K APP P K L E ++
Sbjct: 10022 PKKVEAPPAKVPEVPKKPVPEKKVPVPAPKKVEAPPAKVPEVPKKLIPEEKK 10073
Score = 35.8 bits (81), Expect = 0.082
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 144 RKTGAAPAK---AKPAEAPAAAAPKAEPTAAAVPPPAAPI--PTQMPPVPSPSQPPSGKP 198
+K PAK A P + P A VPPP P PT++P VP + P P
Sbjct: 10508 KKVPVPPAKKPEAPPPKVPEAPKEVVPEKKVPVPPPKKPEVPPTKVPEVPKAAVPEKKVP 10567
Query: 199 VSAVKPTVAPPLAEPGAGKGLRSEHR 224
+ +PP P A K + E +
Sbjct: 10568 EAIPPKPESPPPEVPEAPKEVVPEKK 10593
Score = 35.8 bits (81), Expect = 0.082
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 145 KTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKP 204
K A P P P +P P +P P +P P+ P KP + VK
Sbjct: 10973 KKPAVPEPPPPKPVEEVEVPTVTKRERKIPEPTK-VPEIKPAIPLPAPEPKPKPEAEVK- 11030
Query: 205 TVAPPLAEP 213
T+ PP EP
Sbjct: 11031 TIKPPPVEP 11039
Score = 34.3 bits (77), Expect = 0.24
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 128 VPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPV 187
VP E P+ +K A PAK E P P+ + A AP P ++P V
Sbjct: 10007 VPKKPVPEEKVPVPVPKKVEAPPAKVP--EVPKKPVPEKKVPVPAPKKVEAP-PAKVPEV 10063
Query: 188 PSPSQPPSGKPVSAVKPTVAPPLAEP 213
P P KP K APP P
Sbjct: 10064 PKKLIPEEKKPTPVPKKVEAPPPKVP 10089
Score = 33.1 bits (74), Expect = 0.53
Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 19/139 (13%)
Query: 95 DTVAEDEVVCEIETDKTSVQVPS-PANGVIEAL-LVPDGGKVEGGTPLFTLRKTGAAPAK 152
+ V E +V + + +VP P V+E VP + E P AP +
Sbjct: 10755 EVVPEKKVAVPKKPEVPPAKVPEVPKKPVLEEKPAVPVPERAESPPPEVYEEPEEIAPEE 10814
Query: 153 --AKPAEAPAAAAPKAEPTAAAVPPPAAP------IPTQMPPV------PSPSQPPSGKP 198
A E P A + EP VPPPA P IP + PV P P +P K
Sbjct: 10815 EIAPEEEKPVPVAEEEEPE---VPPPAVPEEPKKIIPEKKVPVIKKPEAPPPKEPEPEKV 10871
Query: 199 VSAVKPTVAPPLAEPGAGK 217
+ K PP P K
Sbjct: 10872 IEKPKLKPRPPPPPPAPPK 10890
Score = 32.7 bits (73), Expect = 0.69
Identities = 41/150 (27%), Positives = 57/150 (38%), Gaps = 9/150 (6%)
Query: 99 EDEVVCEIETDKTSVQV-PSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAK----A 153
E+E E E + T +V P V+E L +VE T R+ K A
Sbjct: 9511 EEEREEEEEAEVTEYEVMEEPEEYVVEEKLHIISKRVEAEPAEVTERQEKKIVLKPKIPA 9570
Query: 154 KPAEAPAAAAPKAEPTAAAVPPPAAPIP--TQMPPVPSPSQPPSGKPVSAVKPTVAPPLA 211
K E P A P+A AP+P ++PP P +P P V P V +
Sbjct: 9571 KIEEPPPAKVPEAPKKIVPEKKVPAPVPKKEKVPPPKVPEEPKKPVPEKKVPPKVI-KME 9629
Query: 212 EPGAGKGLRSEHREKMNRMRQRIAQRLKEA 241
EP K + H + + +A KEA
Sbjct: 9630 EPLPAK-VTERHMQITQEEKVLVAVTKKEA 9658
Score = 32.7 bits (73), Expect = 0.69
Identities = 24/81 (29%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 146 TGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQ--PPSGKPVSAVK 203
T P K PA+ P VP PT++P V P + P PV K
Sbjct: 10457 TKVVPRKEPPAKVPEVPKKIVVEEKVRVPEEPRVPPTKVPEVLPPKEVVPEKKVPVPPAK 10516
Query: 204 PTVAPPLAEPGAGKGLRSEHR 224
APP P A K + E +
Sbjct: 10517 KPEAPPPKVPEAPKEVVPEKK 10537
Score = 32.3 bits (72), Expect = 0.91
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 159 PAAAAPKAEPTAAAVPPPAAPIP-TQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEP 213
P P+ P VP P+P + P P P P + K V K PP +P
Sbjct: 10491 PPTKVPEVLPPKEVVPEKKVPVPPAKKPEAPPPKVPEAPKEVVPEKKVPVPPPKKP 10546
Score = 30.8 bits (68), Expect = 2.6
Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 10/125 (8%)
Query: 97 VAEDEVVCEIETDKTSVQVPS--PANGVI--EALLVPDGGKVEGGTPLFTLRKTGAAPAK 152
V E++V E +VP P V+ + + VP K E P P K
Sbjct: 10477 VVEEKVRVPEEPRVPPTKVPEVLPPKEVVPEKKVPVPPAKKPEAPPPKVPEAPKEVVPEK 10536
Query: 153 AKPAEAPAAAAPKAEPTAAAVPPPAA----PIPTQMPPVPSPSQPPSGKPVSAVKPTVAP 208
P P P+ PT P AA +P +PP P P + V P
Sbjct: 10537 KVPVPPPKK--PEVPPTKVPEVPKAAVPEKKVPEAIPPKPESPPPEVPEAPKEVVPEKKV 10594
Query: 209 PLAEP 213
P A P
Sbjct: 10595 PAAPP 10599
Score = 30.8 bits (68), Expect = 2.6
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 154 KPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPP 209
K EAP A P+ A P ++PP P P KPV KP V P
Sbjct: 10740 KKPEAPPAKVPEVPKEVVPEKKVAVPKKPEVPPAKVPEVPK--KPVLEEKPAVPVP 10793
Score = 30.0 bits (66), Expect = 4.5
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 150 PAKAKPAEAPAAAAPKAEPTAAAVPPPAAPI---------PTQMPPVPSPSQPPSGKPVS 200
PA+ PAA P VP AP P ++P VP P P+
Sbjct: 10678 PAEVVEEPEPAAPPQVTVPPKKPVPEKKAPAVVAKKPELPPVKVPEVPKEVVPEKKVPLV 10737
Query: 201 AVKPTVAPPLAEPGAGKGLRSEHR 224
K APP P K + E +
Sbjct: 10738 VPKKPEAPPAKVPEVPKEVVPEKK 10761
Score = 29.6 bits (65), Expect = 5.9
Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 153 AKPAEAPAAAAPKA------EPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTV 206
AK EAP A P+ E V P +P +P P KPV + V
Sbjct: 9362 AKKKEAPPAKVPEVQKGVVTEEKITIVTQREESPPPAVPEIPKKKVPEERKPVPRKEEEV 9421
Query: 207 APPLAEPGAGK 217
PP P K
Sbjct: 9422 PPPPKVPALPK 9432
Score = 29.6 bits (65), Expect = 5.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 180 IPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGK 217
IP ++P VP P KPV K APP P K
Sbjct: 9946 IPVKVPEVPRKPVPEEKKPVPVPKKKEAPPAKVPEVPK 9983
Score = 29.6 bits (65), Expect = 5.9
Identities = 25/84 (29%), Positives = 28/84 (33%), Gaps = 8/84 (9%)
Query: 139 PLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMP----PVPSPSQPP 194
P T R+ P PA P EP P P A + T P P P+P P
Sbjct: 10992 PTVTKRERKIPEPTKVPEIKPAIPLPAPEPK----PKPEAEVKTIKPPPVEPEPTPIAAP 11047
Query: 195 SGKPVSAVKPTVAPPLAEPGAGKG 218
PV K P E KG
Sbjct: 11048 VTVPVVGKKAEAKAPKEEAAKPKG 11071
Score = 29.3 bits (64), Expect = 7.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 157 EAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPS--GKPVSAVKPTVAPPLAE 212
E+P A P E VP P+P + VP P + P+ KPV K V P+A+
Sbjct: 9393 ESPPPAVP--EIPKKKVPEERKPVPRKEEEVPPPPKVPALPKKPVPEEKVAVPVPVAK 9448
Score = 29.3 bits (64), Expect = 7.7
Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 113 VQVPSPANGVIEALLVPDGGKV---EGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPT 169
V VP P + VP+ KV E P K + P + E P A + EP
Sbjct: 10622 VPVPPPKKPEVPPTKVPEVPKVAVPEKKVPEAIPPKPESPPPEV--FEEPEEVALE-EPP 10678
Query: 170 AAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHR 224
A V P P Q+ P P P K PP+ P K + E +
Sbjct: 10679 AEVVEEPEPAAPPQVTVPPKKPVPEKKAPAVVAKKPELPPVKVPEVPKEVVPEKK 10733
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 46.2 bits (108), Expect = 6e-05
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 148 AAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVA 207
+A ++ PAE P A P+A+PT+ PPA P+ + P P P + P +KP A
Sbjct: 2482 SAALRSLPAEKPPA--PEAQPTSVGTGPPAKPVLLRATPKPLAPAPLAKAPRLPIKPVAA 2539
Query: 208 PPLAEPGA 215
P LA+ A
Sbjct: 2540 PVLAQDQA 2547
Score = 34.3 bits (77), Expect = 0.24
Identities = 34/113 (30%), Positives = 43/113 (38%), Gaps = 25/113 (22%)
Query: 138 TPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAA--VPPPAAPIP-TQMPPVPS----- 189
+P +LR P PA P + P AA + PP +P+P + PP P
Sbjct: 796 SPQLSLRTGPFQPPFLPPARRPRSLQESPAPRRAAGRLGPPGSPLPGSPRPPSPPLGLCH 855
Query: 190 ---------PSQPP------SGKPVSAVKPTVAPPLAEPGAGKGLRS--EHRE 225
PS+ P S P AVKP V P P R+ EHRE
Sbjct: 856 SPRRSSLNLPSRLPHTWRRLSEPPTRAVKPQVRLPFHRPPRAGAWRAPLEHRE 908
Score = 33.9 bits (76), Expect = 0.31
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 150 PAKAKPAEAPAAAAPKAEPTAAAVPPPAAP------------IPTQMPPVPSPSQPPSGK 197
P +P + AP P + +P PA+P P +PP P S +
Sbjct: 664 PVPPRPPSSGPPPAPPLSPALSGLPRPASPYGSLRRHPPPWAAPAHVPPAPQASWWAFVE 723
Query: 198 PVSAVKPTVAPP-LAEPGAGKGLRSEHR 224
P AV P V P LA PG R R
Sbjct: 724 P-PAVSPEVPPDLLAFPGPRPSFRGSRR 750
>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
sapiens]
Length = 2971
Score = 46.2 bits (108), Expect = 6e-05
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 139 PLFTLRKTGAAPAKAKPAEA-PAAAAPKAEPTAAAVPPPAAPIPTQMPPV---PSPSQPP 194
P+ + + PA AKPA A P AA P A A PP A T PV P+ +PP
Sbjct: 2690 PVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPVAAKPAAVRPP 2749
Query: 195 SG---KPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNR 229
+ KPV+ P A+P A K ++ KM+R
Sbjct: 2750 AAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSR 2787
Score = 33.5 bits (75), Expect = 0.41
Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 110 KTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEA--PAAAAPKAE 167
K + P+PA V + V P+ T A P AKPA PAAAA K
Sbjct: 2700 KPAAAKPAPAKPVAAKPVATKMATVR--PPVAVKPATAAKPVAAKPAAVRPPAAAAAKPV 2757
Query: 168 PTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPT 205
T VP P A P P + + V + T
Sbjct: 2758 ATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEIT 2795
>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
sapiens]
Length = 3177
Score = 46.2 bits (108), Expect = 6e-05
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 139 PLFTLRKTGAAPAKAKPAEA-PAAAAPKAEPTAAAVPPPAAPIPTQMPPV---PSPSQPP 194
P+ + + PA AKPA A P AA P A A PP A T PV P+ +PP
Sbjct: 2896 PVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPVAAKPAAVRPP 2955
Query: 195 SG---KPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNR 229
+ KPV+ P A+P A K ++ KM+R
Sbjct: 2956 AAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSR 2993
Score = 33.5 bits (75), Expect = 0.41
Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 110 KTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEA--PAAAAPKAE 167
K + P+PA V + V P+ T A P AKPA PAAAA K
Sbjct: 2906 KPAAAKPAPAKPVAAKPVATKMATVR--PPVAVKPATAAKPVAAKPAAVRPPAAAAAKPV 2963
Query: 168 PTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPT 205
T VP P A P P + + V + T
Sbjct: 2964 ATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEIT 3001
>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
sapiens]
Length = 2570
Score = 46.2 bits (108), Expect = 6e-05
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 139 PLFTLRKTGAAPAKAKPAEA-PAAAAPKAEPTAAAVPPPAAPIPTQMPPV---PSPSQPP 194
P+ + + PA AKPA A P AA P A A PP A T PV P+ +PP
Sbjct: 2289 PVTIINQPSVKPAAAKPAPAKPVAAKPVATKMATVRPPVAVKPATAAKPVAAKPAAVRPP 2348
Query: 195 SG---KPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNR 229
+ KPV+ P A+P A K ++ KM+R
Sbjct: 2349 AAAAAKPVATKPEVPRPQAAKPAATKPATTKPMVKMSR 2386
Score = 33.5 bits (75), Expect = 0.41
Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 110 KTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEA--PAAAAPKAE 167
K + P+PA V + V P+ T A P AKPA PAAAA K
Sbjct: 2299 KPAAAKPAPAKPVAAKPVATKMATVR--PPVAVKPATAAKPVAAKPAAVRPPAAAAAKPV 2356
Query: 168 PTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPT 205
T VP P A P P + + V + T
Sbjct: 2357 ATKPEVPRPQAAKPAATKPATTKPMVKMSREVQVFEIT 2394
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 46.2 bits (108), Expect = 6e-05
Identities = 34/90 (37%), Positives = 39/90 (43%), Gaps = 20/90 (22%)
Query: 146 TGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPI--------------PTQMPPVPSPS 191
T AP +A P APAAAA A P A PPP AP+ PP P P+
Sbjct: 107 TPPAPPRA-PRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPA 165
Query: 192 QP----PSGKPVSAVKPT-VAPPLAEPGAG 216
QP P++A P APP P AG
Sbjct: 166 QPGPRAQRAAPLAAPPPAPAAPPAVAPPAG 195
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/75 (36%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 131 GGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKA----EPTAAAVPPPAAPIPTQMPP 186
G + + PL AAP P P A P A EP P P AP Q PP
Sbjct: 168 GPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPP 227
Query: 187 VPSPSQPPSGKPVSA 201
P P PP G V A
Sbjct: 228 PPQPQPPPEGGAVRA 242
Score = 43.5 bits (101), Expect = 4e-04
Identities = 35/101 (34%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 117 SPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAE--APAAAAPKAEPTAAAVP 174
+P A P G + G R AAP A P AP A AP A P A P
Sbjct: 148 APRAAAAAATAPPSPGPAQPGP-----RAQRAAPLAAPPPAPAAPPAVAPPAGPRRA--P 200
Query: 175 PPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGA 215
PPA + + PP+P P QPP+ P P E GA
Sbjct: 201 PPA--VAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGA 239
Score = 40.8 bits (94), Expect = 0.003
Identities = 28/68 (41%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 148 AAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVA 207
A A A PA AP AAA A TA P PA P P P + PP+ AV P
Sbjct: 138 APVAAAAPARAPRAAAAAA--TAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAG 195
Query: 208 PPLAEPGA 215
P A P A
Sbjct: 196 PRRAPPPA 203
Score = 39.3 bits (90), Expect = 0.007
Identities = 29/73 (39%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 148 AAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVS----AVK 203
AAPA+A A A AA AP + A P P PP P+P+ PP+ P + A
Sbjct: 143 AAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPP-PAPAAPPAVAPPAGPRRAPP 201
Query: 204 PTVA---PPLAEP 213
P VA PPL P
Sbjct: 202 PAVAAREPPLPPP 214
Score = 38.1 bits (87), Expect = 0.017
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 150 PAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPP 209
P + AP A A AAA PP P P PP P + P+ P +A APP
Sbjct: 102 PRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPP-PPAPVAAAAPARAPRAAAAAATAPP 160
Query: 210 L---AEPG 214
A+PG
Sbjct: 161 SPGPAQPG 168
Score = 35.4 bits (80), Expect = 0.11
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 153 AKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAE 212
A + P A P A PAA PP P+P PP+ PV+A P AP A
Sbjct: 96 AARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPA--PVAAAAPARAPRAAA 153
Query: 213 PGA 215
A
Sbjct: 154 AAA 156
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 45.8 bits (107), Expect = 8e-05
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 149 APAKAKPAEAPAAAA---------PKAEP--TAAAVPPPAAPIPTQMPPVPSPSQPPSGK 197
+P+ P++AP + A P A P + +A PPP AP P PP+ P PP+
Sbjct: 686 SPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASP 745
Query: 198 PV--SAVKPTVAPPL 210
P+ SA P PPL
Sbjct: 746 PMSPSATPPPRVPPL 760
Score = 45.8 bits (107), Expect = 8e-05
Identities = 32/71 (45%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 148 AAPAKAKPAEAPAAA--APKAEPTAAAVPPPAAPIPTQMPPVP--SPSQPPSGKPVSAVK 203
AAP P PA+ +P A P A PP AAP P Q+PP P SP PS P V
Sbjct: 700 AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAP-PLQVPPSPPASPPMSPSATPPPRVP 758
Query: 204 PTV-APPLAEP 213
P + APPL P
Sbjct: 759 PLLAAPPLQVP 769
Score = 42.7 bits (99), Expect = 7e-04
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVS---AVKPT 205
+P + P +AP + + +A PP AP PP+ P PP+ P+S P
Sbjct: 666 SPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQ 725
Query: 206 VAPPLAEP 213
PPLA P
Sbjct: 726 APPPLAAP 733
Score = 42.4 bits (98), Expect = 9e-04
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPP---VPSP------SQPPSGKPV 199
AP + +P P P++ A PPP AP PP +PSP + PP P
Sbjct: 565 APCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPX 624
Query: 200 SAVKPTVAPP 209
A+ P APP
Sbjct: 625 LALPPLQAPP 634
Score = 41.6 bits (96), Expect = 0.001
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 27/115 (23%)
Query: 119 ANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAK--AKPAEAPAAAAPKAEPT-----AA 171
A G A P K +G L LR P + A PA P +++P A P+ A
Sbjct: 259 ARGTPRAPAHPSQPKPKG---LQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKAR 315
Query: 172 AVPPP---AAPIPTQMPP-----------VPSPSQPPSGKPV---SAVKPTVAPP 209
VPPP A P+P +PP PSPS PPS + + A P+ APP
Sbjct: 316 PVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPP 370
Score = 41.6 bits (96), Expect = 0.001
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 150 PAKAKPAEA--PAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVA 207
P +A PA A P P + A PPP AP +PP+ +P PP+ P+S P
Sbjct: 591 PPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLS---PLAT 647
Query: 208 PPLAEPGA 215
P P A
Sbjct: 648 PSPQAPNA 655
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 12/120 (10%)
Query: 104 CEIETDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAA 163
C ++ + + P P A P PL L +P P +AP A
Sbjct: 567 CPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLA 626
Query: 164 --PKAEPTAAAVPPPAAPIPTQMPPVPS---------PSQPPSGKPVSA-VKPTVAPPLA 211
P P + PP +P+ T P P+ P PP PV A P +PP++
Sbjct: 627 LPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVS 686
Score = 40.8 bits (94), Expect = 0.003
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPV-PSPSQPPSGKPVSAVKPTVA 207
+P + P A P+A P AA P P P PP+ PS + PP P+ A P
Sbjct: 709 SPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQV 768
Query: 208 PP 209
PP
Sbjct: 769 PP 770
Score = 40.8 bits (94), Expect = 0.003
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 150 PAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVS--AVKPTVA 207
P A P + P + + +A PPP P PP+ P PP+ P+S A P A
Sbjct: 729 PLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQA 788
Query: 208 PP-LAEP 213
PP LA P
Sbjct: 789 PPALATP 795
Score = 39.7 bits (91), Expect = 0.006
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 145 KTGAAPAKAKPAEAPAAAAP---KAEPTAAAVPPPAAPIPTQMPPVPSP----SQPPSGK 197
+T +AP E P AP +A P+ PPP P PP +P S P G
Sbjct: 547 QTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGL 606
Query: 198 PVSAVKPTVAPPLAEP 213
P + P PP P
Sbjct: 607 PSPPLSPLATPPPQAP 622
Score = 38.9 bits (89), Expect = 0.010
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 153 AKPAEAPAAAAPKAEPTAAAVPP-PAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLA 211
A P +P+A P P + A PP P P PP+ + PP P P APPL
Sbjct: 681 ASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAP----PPLAAPPLQ 736
Query: 212 EP 213
P
Sbjct: 737 VP 738
Score = 38.5 bits (88), Expect = 0.013
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 150 PAKAKPAEAP----AAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPT 205
P + P+ AP A+AP P PP AP P Q PP P + PP A P
Sbjct: 534 PLENLPSLAPPPLQTASAPLTTPHLET-PPCPAPCPLQAPPSPLTTPPPETPSSIATPPP 592
Query: 206 VAPP-LAEP 213
APP LA P
Sbjct: 593 QAPPALASP 601
Score = 38.5 bits (88), Expect = 0.013
Identities = 32/112 (28%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 118 PANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAK-AKPAEAPAAAAPKAEPTAAAV--- 173
P G+ L P P L A P+ A P +P A P A AV
Sbjct: 602 PLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLL 661
Query: 174 -----PPPAAPI-----PTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGA 215
PPP+ P+ P PPV + PPS P S P + P + P +
Sbjct: 662 QAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPAS 713
Score = 38.1 bits (87), Expect = 0.017
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 153 AKPAEAPAAAAPKAEPTAAAVPP---PAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVA-- 207
A P +P+A P P A PP P +P P +P P PP P A P A
Sbjct: 743 ASPPMSPSATPPPRVPPLLAAPPLQVPPSP-PASLPMSPLAKPPPQAPPALATPPLQALP 801
Query: 208 -PPLAEPG 214
PP + PG
Sbjct: 802 SPPASFPG 809
Score = 37.4 bits (85), Expect = 0.028
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 16/84 (19%)
Query: 138 TPLFTLRKTGAAPAKAKPAEAPAAAA-----------PKAEPTAAAVPPPAAPIPTQMPP 186
+PL T +G KA+P P AA P A P A P P+AP Q P
Sbjct: 302 SPLATPSPSGT---KARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLP 358
Query: 187 VPSPSQPPSGKPVSAVKPTV-APP 209
P P+ PPS P S P + APP
Sbjct: 359 SP-PATPPSQAPPSMTTPPMQAPP 381
Score = 37.0 bits (84), Expect = 0.037
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQP--PSGKPVSAVKPTV 206
+P P +AP A A P A+P P A P Q P PS S P P P P +
Sbjct: 779 SPLAKPPPQAPPALAT---PPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVL 835
Query: 207 APPLAE----PGAGKGLRSEHR 224
A PL + P A L++ R
Sbjct: 836 AAPLLQVPPSPPASPTLQAPRR 857
Score = 35.8 bits (81), Expect = 0.082
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAA-----AVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVK 203
+P + P A P+A P A A+P P A P Q P PS S P S P++
Sbjct: 771 SPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMS--PLATPP 828
Query: 204 PTVAPPLAEP 213
P P LA P
Sbjct: 829 PQAPPVLAAP 838
Score = 34.7 bits (78), Expect = 0.18
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 116 PSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAP---KAEPTAAA 172
PSP+ + PD TPL A P P+ +AP + P+ A
Sbjct: 307 PSPSGTKARPVPPPDNA----ATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPA 362
Query: 173 VPPPAAPIPTQMPPVPSPSQ----PPSGKPVSAVKPTV-APP 209
PP AP PP+ +P PP P S P++ APP
Sbjct: 363 TPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPP 404
Score = 33.9 bits (76), Expect = 0.31
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVK--PTV 206
+P + P +AP + + + A PPP AP P + P PP+ + A + PT
Sbjct: 802 SPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTP 861
Query: 207 APPLAEPG 214
P + G
Sbjct: 862 GPDTSVSG 869
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAA----VPPPAAPIPT----QMPPVPSPSQPPSGKPVS 200
+P+ + P A P+A P AA VPP PT + PP P P SG ++
Sbjct: 814 SPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLT 873
Query: 201 -AVKPTVAPP 209
A+ P PP
Sbjct: 874 LALAPGPPPP 883
Score = 31.6 bits (70), Expect = 1.5
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 125 ALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVP---PPAAPIP 181
AL V G PL + G P AP A ++ T++ P PPA+
Sbjct: 43 ALRVLGAAGAVGRKPL--AERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRG 100
Query: 182 TQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNR 229
+ PP + S P P A T PL + KGLR E + R
Sbjct: 101 ERAPPAKNTSPGPVSSPGRASGTTRPGPLGQ----KGLRISAEETVAR 144
Score = 31.6 bits (70), Expect = 1.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 153 AKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSA-VKPTVAPPLA 211
A P + P + + A PPP AP PP+ + PP+ P A P+ + P++
Sbjct: 763 APPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMS 822
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 45.8 bits (107), Expect = 8e-05
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 137 GTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSG 196
G P L+ AAP A AP A PK P A PP +AP P P P+ + P
Sbjct: 498 GAPDKRLKAEPAAPPAAPSTPAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQS 557
Query: 197 KPVSAVKPTVAPPLAEPG 214
P V AP L G
Sbjct: 558 TPTPGV--AAAPTLVSGG 573
Score = 33.5 bits (75), Expect = 0.41
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 129 PDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVP 188
PDGG ++G R G++P A P E P + P P A +P + P P
Sbjct: 1672 PDGG-LKGAAEGPPKRPGGSSPLNAVPCEGPPGSEPPRRPPPAPHDGDRKELPREQPLPP 1730
Query: 189 SP-SQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKEAQNTCAM 247
P S + +P P P G ++ +K + +R + LK + A
Sbjct: 1731 GPIGTERSQRTDRGTEPGPIRPSHRP--GPPVQFGTSDKDSDLRLVVGDSLKAEKELTAS 1788
Query: 248 LT 249
+T
Sbjct: 1789 VT 1790
Score = 30.4 bits (67), Expect = 3.4
Identities = 42/178 (23%), Positives = 59/178 (33%), Gaps = 20/178 (11%)
Query: 144 RKTGAAPAKAKPAEAPAAA--APKAEPTAAAV-------PPPAAP-IPTQMPPVPSPSQP 193
R + +A + +P EA +P +EP PP P P PP+P P +
Sbjct: 359 RDSQSASGEERPPEADGKKGNSPNSEPPTPKTAWAETSRPPETEPGPPAPKPPLPPPHRG 418
Query: 194 PSGK--PVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKEAQNTCAMLTTF 251
P+G P PP P ++ RQR Q E
Sbjct: 419 PAGNWGPPGDYPDRGGPPCKPPAP--------EDEDEAWRQRRKQSSSEISLAVERARRR 470
Query: 252 NEIDMSNIQEMRARHKEAFLKKHNLKLGFMSAFVKASAFALQEQPVVNAVIDDTTKEV 309
E + +QE R LK+ + K G +KA A P A KE+
Sbjct: 471 REEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPAPPPAVPKEL 528
Score = 30.0 bits (66), Expect = 4.5
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 164 PKAEPTAAAVPPPAAPIP-TQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSE 222
PK+ + A PP + P+P +Q P P +PP+ + + P+ A+ G +
Sbjct: 95 PKSSDASTAQPPESQPLPASQTPASNQPKRPPAAPENTPLVPSGVKSWAQASVTHGAHGD 154
Score = 29.3 bits (64), Expect = 7.7
Identities = 32/118 (27%), Positives = 44/118 (37%), Gaps = 31/118 (26%)
Query: 150 PAKAKPAEAP----AAAAP-----------------KAEPTAAAVPPPAAPIPTQMPPVP 188
PA+A PA++ AAAP +A P +P P P + P
Sbjct: 549 PAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGSFEASPVEPQLPSKEGPEPPEEVP-- 606
Query: 189 SPSQPPSGKPVSAVKPT---VAPPLAEPGAGKGLRSEHREKMNR-MRQRIAQRLKEAQ 242
PP+ PV V+P + P P G G + R RQ+ Q LK+ Q
Sbjct: 607 ----PPTTPPVPKVEPKGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQ 660
Score = 29.3 bits (64), Expect = 7.7
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 116 PSPANGVIEALLVPDGGKV--EGGTPLFTLRKTGAAPAKAKPAEAPAAA--APKAEPTAA 171
PSPA A GG+V G P R G P + P +P A APK PT
Sbjct: 1146 PSPA----PARFTARGGRVFTPRGVPSRRGRGGGRPPPQVCPGWSPPAKSLAPKKPPTGP 1201
Query: 172 AVPPPAAPIPTQMPPVPSPSQP 193
+PP P+ ++ +P P P
Sbjct: 1202 -LPPSKEPLKEKL--IPGPLSP 1220
>gi|145386517 phostensin [Homo sapiens]
Length = 613
Score = 45.8 bits (107), Expect = 8e-05
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 83 TEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDG-GKVEG----- 136
TEG W+ + A + +IE + P A ++E+ V G G+ E
Sbjct: 329 TEG---WKWTLNSGKAREWTPRDIEAQTQKPEPPESAEKLLESPGVEAGEGEAEKEEAGA 385
Query: 137 -GTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAV-PPPAAPIPTQMPPVPSPSQPP 194
G PL L+ + P+ P +A + E A + PPP AP+ + PP P+ QPP
Sbjct: 386 QGRPLRALQNCCSVPSPLPPEDAGTGGLRQQEEEAVELQPPPPAPL-SPPPPAPTAPQPP 444
Query: 195 SGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMR 231
+S + V A PG G RS H +N R
Sbjct: 445 GDPLMSRLFYGVK---AGPGVGAPRRSGHTFTVNPRR 478
>gi|199559805 phostensin [Homo sapiens]
Length = 613
Score = 45.8 bits (107), Expect = 8e-05
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 83 TEGDVRWEKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDG-GKVEG----- 136
TEG W+ + A + +IE + P A ++E+ V G G+ E
Sbjct: 329 TEG---WKWTLNSGKAREWTPRDIEAQTQKPEPPESAEKLLESPGVEAGEGEAEKEEAGA 385
Query: 137 -GTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAV-PPPAAPIPTQMPPVPSPSQPP 194
G PL L+ + P+ P +A + E A + PPP AP+ + PP P+ QPP
Sbjct: 386 QGRPLRALQNCCSVPSPLPPEDAGTGGLRQQEEEAVELQPPPPAPL-SPPPPAPTAPQPP 444
Query: 195 SGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMR 231
+S + V A PG G RS H +N R
Sbjct: 445 GDPLMSRLFYGVK---AGPGVGAPRRSGHTFTVNPRR 478
>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
Length = 904
Score = 45.8 bits (107), Expect = 8e-05
Identities = 47/143 (32%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
Query: 89 WEKAVGDTVAEDEVVCE---IETDKTSVQVPSPANGVIEALL-VPDGGKVEGGTPLFTLR 144
WE A G++ A V T TSV V SPA L P GKV R
Sbjct: 287 WEPAAGNSPARASVPAAPNPAATSATSVHVRSPARPSESRLAPTPTEGKVRP-------R 339
Query: 145 KTGAAP---AKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSA 201
T ++P + A P A AA+ P A P +A P PA P P V +P S SA
Sbjct: 340 VTNSSPMGWSSAAPCTAAAASHP-AVPPSAPDPRPATPQGGGAPRVAAPQTTLSSSSTSA 398
Query: 202 VKPTVAPPLAEPGAGKGLRSEHR 224
TV PP P A + ++ ++
Sbjct: 399 A--TVDPPAWTPSASRTQQARNK 419
Score = 34.7 bits (78), Expect = 0.18
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 5/101 (4%)
Query: 120 NGVIEALLVPDGGKVEGG--TPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPA 177
N + VP G + G TP L K + + +A +A A P PA
Sbjct: 418 NKFFQTSAVPPGTSLSGRGPTPSLVLSKDSSKEQARNFLKQALSALEEAGAPAPGRPSPA 477
Query: 178 -APIPTQMPPVPSPSQPPSGKPVSAVKPTV--APPLAEPGA 215
A +P+ P +P P KP+ + P V P EP A
Sbjct: 478 TAAVPSSQPKTEAPQASPLAKPLQSSSPRVLGLPSRMEPPA 518
Score = 32.3 bits (72), Expect = 0.91
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 22/123 (17%)
Query: 140 LFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAA--VPPPAAPIPTQMPPV---PSPSQPP 194
L L + GA PA +P+ A AA P ++P A P A P+ + P V PS +PP
Sbjct: 460 LSALEEAGA-PAPGRPSPA-TAAVPSSQPKTEAPQASPLAKPLQSSSPRVLGLPSRMEPP 517
Query: 195 ------SGKPVSAVKPTVAPPLAEP------GAGKGLRSE---HREKMNRMRQRIAQRLK 239
S SA+ P LAE GAG + E + K + Q ++ L+
Sbjct: 518 APLSTSSTSQASALPPAGRRNLAESSGVGRVGAGSRPKPEAPMAKGKSTTLTQDMSTSLQ 577
Query: 240 EAQ 242
E Q
Sbjct: 578 EGQ 580
>gi|52485606 formin-like 2 [Homo sapiens]
Length = 1092
Score = 45.4 bits (106), Expect = 1e-04
Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
Query: 90 EKAVGDTVAEDEVVCEIETDKTSVQVPSPANGVIEALLVPDGGKVEGGTPLFTLRKTGAA 149
E+A+ ++ + E+E T +++ +G I L V G + G+ + G
Sbjct: 459 EEAIQRQSTLEKKIHELEKQGT-IKIQKKGDGDIAILPVVASGTLSMGSEVVAGNSVGPT 517
Query: 150 PAKAK--------PAEAPAAAAPKAEPTAAAVPP-PAAPIPTQMPPVPSPSQPPSGKPVS 200
A P P++ P+ PP P P P PP P P PP P
Sbjct: 518 MGAASSGPLPPPPPPLPPSSDTPETVQNGPVTPPMPPPPPPPPPPPPPPPPPPPPPLPGP 577
Query: 201 AVKPTVAPPLAEP 213
A + APPLA P
Sbjct: 578 AAETVPAPPLAPP 590
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 45.4 bits (106), Expect = 1e-04
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 134 VEGGTPLFTLRKTG-AAPAK---AKPAEAPAAAAPK----AEPTAAAVPPPAAPIPTQMP 185
+ G P + +G AAPA A+P P + A AEP+A A P AAP P
Sbjct: 266 LSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPAEPSAPAAPS-AAPAPAAPA 324
Query: 186 PVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRS 221
P P+P S +P SA P P + GA GL S
Sbjct: 325 PAPAPQSAASSQPQSASTPPALAPGSLLGAAPGLPS 360
Score = 38.1 bits (87), Expect = 0.017
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 131 GGKVEGGTPLFTLRKTGAAPAKAKPAEAPA-AAAPKAEPTAAAVPPPAAP--IPTQMPPV 187
GG E P AAPA A PA APA +A ++P +A+ PP AP + P +
Sbjct: 303 GGPAEPSAPA----APSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPGSLLGAAPGL 358
Query: 188 PSPSQP 193
PSP P
Sbjct: 359 PSPLLP 364
Score = 30.0 bits (66), Expect = 4.5
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 149 APAKAKPAEAPAAA--APKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPT 205
A +A+P E A A A T A PPPAAP PP P+ P + + A+ T
Sbjct: 120 AEGEARPVEKEAEPMDAEPAGDTRAPRPPPAAP----APPTPAYGAPSTNVTLEALLST 174
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 45.1 bits (105), Expect = 1e-04
Identities = 38/115 (33%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 135 EGGTPL---FTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVP--- 188
+ G+PL F A A PA APAAA A AA AAP +Q P VP
Sbjct: 446 QAGSPLKRPFPAAAPAVAAAAPAPAPAPAAAPALAAAAVAAAAGGAAPSHSQKPSVPLIK 505
Query: 189 -SPSQPPSGKPVSAVKPTVAPPLAEPGAGKGLRSEHREKMNRMRQRIAQRLKEAQ 242
S +P +G+P VK +AP + GL++ + E R Q + K Q
Sbjct: 506 ASRRRPAAGRPTRFVK--IAPAIQVRTGSTGLKATNVEGPVRGAQVLGCSFKPVQ 558
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/66 (40%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 150 PAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPP 209
PA A A PAAA P A AA PP A P VP+ +PP+ P +A V P
Sbjct: 113 PAAAPAAVCPAAADPSAASLCAASPPAAVP-----AAVPAAVRPPAAGPPAAALAAVYPA 167
Query: 210 LAEPGA 215
A+P A
Sbjct: 168 AADPSA 173
Score = 37.0 bits (84), Expect = 0.037
Identities = 29/82 (35%), Positives = 33/82 (40%), Gaps = 16/82 (19%)
Query: 150 PAKAKPAEA------PAAAAPKAEPTAAAVP---PPAAPIPTQMPPVPSPS-------QP 193
PA A P+ A P AA P A P A P PPAA + P PS P
Sbjct: 122 PAAADPSAASLCAASPPAAVPAAVPAAVRPPAAGPPAAALAAVYPAAADPSAASLCAASP 181
Query: 194 PSGKPVSAVKPTVAPPLAEPGA 215
+ P +A VAP PGA
Sbjct: 182 LAAVPAAASPAAVAPAAVCPGA 203
Score = 35.8 bits (81), Expect = 0.082
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 122 VIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIP 181
V A P + +PL + + A A A P AA P A AA P A P
Sbjct: 164 VYPAAADPSAASLCAASPLAAVPAAASPAAVAPAAVCPGAAGPSAASLCAASQPAAVPAA 223
Query: 182 TQMPPVPSPSQPPSGKPVSAVKPTVAPPLA 211
P+ + P + P +A + AP A
Sbjct: 224 AS----PAAAAPLAVNPAAAARAAAAPAAA 249
Score = 35.8 bits (81), Expect = 0.082
Identities = 29/67 (43%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 150 PAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPV-PSPSQPPS-GKPVS---AVKP 204
PA A +PAAAAP A AAA AAP + V SP+ P + +PVS A P
Sbjct: 217 PAAVPAAASPAAAAPLAVNPAAAARAAAAPAAACVQSVAESPATPLAIAQPVSFPPAPVP 276
Query: 205 TVAPPLA 211
PPLA
Sbjct: 277 CAVPPLA 283
Score = 35.0 bits (79), Expect = 0.14
Identities = 34/136 (25%), Positives = 46/136 (33%), Gaps = 22/136 (16%)
Query: 92 AVGDTVAEDEVVCEIETDKTSVQV-----PSPANGVIEALLVPDGGKVEGGTPLFTLRKT 146
A G A VC D ++ + P+ + A + P G P L
Sbjct: 109 AAGPPAAAPAAVCPAAADPSAASLCAASPPAAVPAAVPAAVRPPAA----GPPAAAL--A 162
Query: 147 GAAPAKAKPAEA-----------PAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPS 195
PA A P+ A PAAA+P A AA P A P + P+ P+
Sbjct: 163 AVYPAAADPSAASLCAASPLAAVPAAASPAAVAPAAVCPGAAGPSAASLCAASQPAAVPA 222
Query: 196 GKPVSAVKPTVAPPLA 211
+A P P A
Sbjct: 223 AASPAAAAPLAVNPAA 238
Score = 34.3 bits (77), Expect = 0.24
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 148 AAPAKAKPAEA-PAAAAPKAEPTAAAVPPPAAPIPTQMP-PVPSPSQPPSGKPVSAVKPT 205
A+P A PA A PAA AP A AA P A+ P VP+ + P + P++
Sbjct: 179 ASPLAAVPAAASPAAVAPAAVCPGAAGPSAASLCAASQPAAVPAAASPAAAAPLAVNPAA 238
Query: 206 VAPPLAEPGA 215
A A P A
Sbjct: 239 AARAAAAPAA 248
Score = 33.5 bits (75), Expect = 0.41
Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 148 AAPAKAKPAEAP-AAAAPKAEPTAAAVPPPAAPI----PTQMPPVPSPSQPP 194
AAP PA A AAAAP A + PA P+ P PP P P P
Sbjct: 229 AAPLAVNPAAAARAAAAPAAACVQSVAESPATPLAIAQPVSFPPAPVPCAVP 280
Score = 31.2 bits (69), Expect = 2.0
Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 148 AAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSP-SQPPSGKPVSAVKPTV 206
+AP A A A A AA PP A P P P P + PS + A P
Sbjct: 81 SAPVVVPSALTRAVAWRPAAAPAAVRPPAAGP-PAAAPAAVCPAAADPSAASLCAASPPA 139
Query: 207 APPLAEPGA 215
A P A P A
Sbjct: 140 AVPAAVPAA 148
Score = 30.0 bits (66), Expect = 4.5
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 128 VPDGGKVEGGTPLFTLRKTGAAPAKAKPAEA--PAAAAPKAEPTAAAVPP--PAAPIPTQ 183
VP PL + AA A A PA A + A A P A A P P AP+P
Sbjct: 220 VPAAASPAAAAPL-AVNPAAAARAAAAPAAACVQSVAESPATPLAIAQPVSFPPAPVPCA 278
Query: 184 MPPV 187
+PP+
Sbjct: 279 VPPL 282
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 45.1 bits (105), Expect = 1e-04
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 149 APAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKP---VSAVKPT 205
+P KP AP A P P +PPP P+ P P P PPS P +A P
Sbjct: 308 SPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDFAAPPPP 367
Query: 206 VAPPLAE 212
PP A+
Sbjct: 368 PPPPAAD 374
Score = 37.4 bits (85), Expect = 0.028
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 139 PLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKP 198
P F AAP P PAA P P + P AP P PP P P PP
Sbjct: 353 PSFPPHPDFAAPPPPPPP--PAADYPTLPPPPLSQPTGGAPPPPPPPPPPGPPPPPF--T 408
Query: 199 VSAVKPTVAPPLAE 212
+ +P + PPL++
Sbjct: 409 GADGQPAIPPPLSD 422
Score = 33.5 bits (75), Expect = 0.41
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 155 PAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSP--SQPPSGKPVSAVKPTVAPPLAE 212
P +P + P P AA PPP P P +P P SQP G P P P
Sbjct: 348 PPPSPPSFPP--HPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPPGPPPP 405
Query: 213 PGAG 216
P G
Sbjct: 406 PFTG 409
Score = 33.1 bits (74), Expect = 0.53
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 145 KTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKP 204
K + + + P AP +P A PP P P M +P P PP G P
Sbjct: 290 KRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIP-PPPPPVGFGSPGTPP 348
Query: 205 TVAPPLAEP 213
+PP P
Sbjct: 349 PPSPPSFPP 357
Score = 32.7 bits (73), Expect = 0.69
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 28/100 (28%)
Query: 144 RKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPPAAPIPTQM----------------PPV 187
R + +P+ PA P + P +P A P P P P + PP
Sbjct: 291 RSSVVSPSHPPPAP-PLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPP 349
Query: 188 PSP----------SQPPSGKPVSAVKPTV-APPLAEPGAG 216
PSP + PP P +A PT+ PPL++P G
Sbjct: 350 PSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGG 389
Score = 32.3 bits (72), Expect = 0.91
Identities = 28/99 (28%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 117 SPANGVIEALLVPDGGKVEGGTPLFTLRKTGAAPAKAKPAEAPAAAAPKAEPTAAAVPPP 176
SP+ E L P E P+ R +G A K +P+ P + P P
Sbjct: 257 SPSPSFSEDNLPPP--PAEFSYPVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKP 314
Query: 177 AAPIPTQMPPVPSP--SQPPSGKPVSAVKPTVAPPLAEP 213
P PP P P PP PV P PP + P
Sbjct: 315 GFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPP 353
Score = 30.0 bits (66), Expect = 4.5
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 162 AAPKAEPTAA-AVPPPAAPIPTQMPPVPSPSQPPSGKPVSAVKPTVAPPLAEPGAGKG 218
A PK + + PPPA P+ + PP P P P P P + P P G G
Sbjct: 287 AGPKRSSVVSPSHPPPAPPLGS--PPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFG 342
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,641,347
Number of Sequences: 37866
Number of extensions: 1044389
Number of successful extensions: 25950
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 1059
Number of HSP's that attempted gapping in prelim test: 11311
Number of HSP's gapped (non-prelim): 9000
length of query: 453
length of database: 18,247,518
effective HSP length: 106
effective length of query: 347
effective length of database: 14,233,722
effective search space: 4939101534
effective search space used: 4939101534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.