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Search of human proteins with 19923352
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923352 NK3 homeobox 1 [Homo sapiens]
(234 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923352 NK3 homeobox 1 [Homo sapiens] 476 e-135
gi|4502365 NK3 homeobox 2 [Homo sapiens] 123 1e-28
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 93 2e-19
gi|31377777 NK2 homeobox 8 [Homo sapiens] 92 4e-19
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 88 7e-18
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 87 9e-18
gi|118766339 thyroid transcription factor 1 isoform 1 [Homo sapi... 86 2e-17
gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens] 86 2e-17
gi|157426823 NK2 homeobox 4 [Homo sapiens] 86 4e-17
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 82 3e-16
gi|39930383 BarH-like homeobox 2 [Homo sapiens] 82 4e-16
gi|4506049 hematopoietically expressed homeobox [Homo sapiens] 80 1e-15
gi|226437602 NK1 homeobox 2 [Homo sapiens] 80 2e-15
gi|70608170 H6 family homeobox 2 [Homo sapiens] 79 3e-15
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 79 4e-15
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 78 6e-15
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 78 6e-15
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 78 6e-15
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens] 78 6e-15
gi|19923391 homeobox D3 [Homo sapiens] 77 1e-14
gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens] 77 1e-14
gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens] 77 1e-14
gi|89257348 homeo box HB9 [Homo sapiens] 77 1e-14
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 77 2e-14
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 76 3e-14
gi|24497513 homeobox A3 isoform a [Homo sapiens] 75 5e-14
gi|13562112 homeobox A3 isoform a [Homo sapiens] 75 5e-14
gi|157743259 H6 family homeobox 3 [Homo sapiens] 75 5e-14
gi|27886557 msh homeobox 2 [Homo sapiens] 75 5e-14
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 75 5e-14
>gi|19923352 NK3 homeobox 1 [Homo sapiens]
Length = 234
Score = 476 bits (1226), Expect = e-135
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEP 60
MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEP
Sbjct: 1 MLRVPEPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEP 60
Query: 61 EPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTP 120
EPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTP
Sbjct: 61 EPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTP 120
Query: 121 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK 180
KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK
Sbjct: 121 KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK 180
Query: 181 RKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW 234
RKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW
Sbjct: 181 RKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYPYLYCVGSWSPAFW 234
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 123 bits (309), Expect = 1e-28
Identities = 86/217 (39%), Positives = 109/217 (50%), Gaps = 48/217 (22%)
Query: 32 QDILRDGAQRQGGRTSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEEAET-L 90
+D+ + A R S+ D P E + G R GA L +G +
Sbjct: 136 KDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPR---GAHVSALCSGAGGGGGSGPAGV 192
Query: 91 AETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLS 150
AE E E P PK +KRSRAAFSH QV ELER+F+HQ+YLS
Sbjct: 193 AEEEEE--------------------PAAPKPRKKRSRAAFSHAQVFELERRFNHQRYLS 232
Query: 151 APERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKE-------- 202
PERA LA +LKLTETQVKIWFQNRRYKTKR+Q++++L +S PA K+
Sbjct: 233 GPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADL-----LASAPAAKKVAVKVLVR 287
Query: 203 ---------EAFSRASLVSVYNSYPYYPYLYCVGSWS 230
E SL+ + SY YYPY YC+ W+
Sbjct: 288 DDQRQYLPGEVLRPPSLLPLQPSY-YYPY-YCLPGWA 322
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 92.8 bits (229), Expect = 2e-19
Identities = 62/165 (37%), Positives = 81/165 (49%), Gaps = 27/165 (16%)
Query: 84 PEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQPQKRSR----AAFSHTQVIEL 139
P+E E E +R S L + + + ++P+ RSR FS QV EL
Sbjct: 104 PKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFEL 163
Query: 140 ERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPA 199
ER+F Q+YLSAPER HLA +LKLT TQVKIWFQNRRYK KR++ L +L H+ P
Sbjct: 164 ERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSL-ELGAHAPPPP 222
Query: 200 LKEEA----------------------FSRASLVSVYNSYPYYPY 222
+ A +S + YNS+P Y Y
Sbjct: 223 PRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGY 267
>gi|31377777 NK2 homeobox 8 [Homo sapiens]
Length = 239
Score = 92.0 bits (227), Expect = 4e-19
Identities = 60/152 (39%), Positives = 78/152 (51%), Gaps = 20/152 (13%)
Query: 51 QRDPEPE-PEPEPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENT 109
+R+PEP P+P+P L + P E+ ET P DS
Sbjct: 27 RREPEPRAPQPDPCAA---------WLDSERGHYPSSDESSLETSPP--------DSSQR 69
Query: 110 SGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 169
A P P + + +K+ R FS Q +ELER+F Q+YLSAPER LA L+LT TQVK
Sbjct: 70 PSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASLLRLTPTQVK 129
Query: 170 IWFQNRRYKTKRKQL--SSELGDLEKHSSLPA 199
IWFQN RYK KR + ++E DL + L A
Sbjct: 130 IWFQNHRYKLKRARAPGAAESPDLAASAELHA 161
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 87.8 bits (216), Expect = 7e-18
Identities = 49/104 (47%), Positives = 64/104 (61%), Gaps = 6/104 (5%)
Query: 95 PERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPER 154
PER +G+ ++ G R Q + +++ R FS QV+ LER+F Q+YLSAPER
Sbjct: 26 PERGVGN---SGDSVRGG--RSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPER 80
Query: 155 AHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLP 198
HLA L+LT TQVKIWFQNRRYK KR++ L +L H P
Sbjct: 81 EHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSL-ELAGHPLTP 123
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 87.4 bits (215), Expect = 9e-18
Identities = 71/194 (36%), Positives = 93/194 (47%), Gaps = 29/194 (14%)
Query: 2 LRVPEPRPGEAKAEGA---------APPTPSKPLTS-FLIQDILRDGAQRQGGRTSSQRQ 51
L PRPG A G + P S+ +TS FLI+DIL D S
Sbjct: 59 LETGTPRPGGASGPGLDSHLQPGQLSAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSG 118
Query: 52 RDPEPEPEPEPEGGRSRAGAQND---QLSTGPRAAPEEAETLAETEPERHLGSYLLDSEN 108
+ PEP GGR A A D +L A ++E + E +R + S DS
Sbjct: 119 QPAAPEP-----GGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSR-DSP- 171
Query: 109 TSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQV 168
P K+P+K +R AF+ Q+ +LER F QKYLS +R LA +L LT+TQV
Sbjct: 172 --------PVRLKKPRK-ARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQV 222
Query: 169 KIWFQNRRYKTKRK 182
K W+QNRR K KR+
Sbjct: 223 KTWYQNRRTKWKRQ 236
>gi|118766339 thyroid transcription factor 1 isoform 1 [Homo
sapiens]
Length = 401
Score = 86.3 bits (212), Expect = 2e-17
Identities = 40/63 (63%), Positives = 46/63 (73%)
Query: 120 PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKT 179
P P+++ R FS QV ELER+F QKYLSAPER HLA + LT TQVKIWFQN RYK
Sbjct: 187 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 246
Query: 180 KRK 182
KR+
Sbjct: 247 KRQ 249
>gi|4507715 thyroid transcription factor 1 isoform 2 [Homo sapiens]
Length = 371
Score = 86.3 bits (212), Expect = 2e-17
Identities = 40/63 (63%), Positives = 46/63 (73%)
Query: 120 PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKT 179
P P+++ R FS QV ELER+F QKYLSAPER HLA + LT TQVKIWFQN RYK
Sbjct: 157 PSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 216
Query: 180 KRK 182
KR+
Sbjct: 217 KRQ 219
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 85.5 bits (210), Expect = 4e-17
Identities = 41/75 (54%), Positives = 49/75 (65%)
Query: 123 PQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 182
P+++ R FS QV ELER+F QKYLSAPER HLA + LT TQVKIWFQN RYK KR+
Sbjct: 188 PRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 247
Query: 183 QLSSELGDLEKHSSL 197
L++ L
Sbjct: 248 AKDKAAQQLQQEGGL 262
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 82.4 bits (202), Expect = 3e-16
Identities = 40/65 (61%), Positives = 47/65 (72%)
Query: 124 QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 183
+++ R FS QV ELER+F Q+YLSAPER LA LKLT TQVKIWFQNRRYK KR++
Sbjct: 138 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQR 197
Query: 184 LSSEL 188
L
Sbjct: 198 QDQTL 202
>gi|39930383 BarH-like homeobox 2 [Homo sapiens]
Length = 387
Score = 82.0 bits (201), Expect = 4e-16
Identities = 69/231 (29%), Positives = 104/231 (45%), Gaps = 29/231 (12%)
Query: 6 EPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPEP--- 62
+P P + G+A P +SFLI+DIL D S P P+ E
Sbjct: 119 QPPPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAV 178
Query: 63 -EGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTPK 121
E R + ++ + R E++++ + + G + S S P K
Sbjct: 179 HESFRPKLEQEDSKTKLDKR---EDSQSDIKCHGTKEEGDREITSSRESP-----PVRAK 230
Query: 122 QPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 181
+P+K +R AFS Q+ +LER F QKYLS +R LA L LT+TQVK W+QNRR K KR
Sbjct: 231 KPRK-ARTAFSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKR 289
Query: 182 K-----QLSSELGDLEK-----------HSSLPALKEEAFSRASLVSVYNS 216
+ +L +E G+ H SL + + A+ ++Y+S
Sbjct: 290 QTAVGLELLAEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSS 340
>gi|4506049 hematopoietically expressed homeobox [Homo sapiens]
Length = 270
Score = 80.5 bits (197), Expect = 1e-15
Identities = 80/236 (33%), Positives = 93/236 (39%), Gaps = 40/236 (16%)
Query: 7 PRPGEAKAEGAAPPTPSKPL------TSFLIQDILRDG-----------AQRQGGRTSSQ 49
P PG A P PL T F I+DIL G + +
Sbjct: 4 PHPGPAAGAVGVPLYAPTPLLQPAHPTPFYIEDILGRGPAAPTPAPTLPSPNSSFTSLVS 63
Query: 50 RQRDPEPEPEP-EPEGGRSRAGAQNDQLSTG---------PRAAPEEAETLAETEPERHL 99
R P EP P P A A G PR + L +P L
Sbjct: 64 PYRTPVYEPTPIHPAFSHHSAAALAAAYGPGGFGGPLYPFPRTVNDYTHALLRHDP---L 120
Query: 100 GSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAK 159
G LL S P L Q P +K + FS+ Q IELE+KF QKYLS PER LAK
Sbjct: 121 GKPLLWS-------PFL-QRPLHKRKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAK 172
Query: 160 NLKLTETQVKIWFQNRRYKTKRKQLSSELGDLEKHSSLPALKEEAFSRASLVSVYN 215
L+L+E QVK WFQNRR K +R L E K L +L R L S N
Sbjct: 173 MLQLSERQVKTWFQNRRAKWRR--LKQENPQSNKKEELESLDSSCDQRQDLPSEQN 226
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 79.7 bits (195), Expect = 2e-15
Identities = 61/181 (33%), Positives = 85/181 (46%), Gaps = 8/181 (4%)
Query: 6 EPRPGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPEPEGG 65
E R A+ E + P+ D GA + S+ + + + E +P
Sbjct: 45 EARKSLAEVEAGKDASSRDPVRQLETPDAAGPGAGQASPLEGSEAEEEEDAE-DPRRPRL 103
Query: 66 RSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQPQ- 124
R RA L+ P A A LA EP G + S S PR + +P
Sbjct: 104 RERAARLLPGLARSPDAP---AGALASGEPCEDGGGGPVRSPPGSPGSPRPRRRRLEPNC 160
Query: 125 ---KRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 181
+R+R AF++ Q++ LE KF +YLS ER +LA +L LTETQVKIWFQNRR K K+
Sbjct: 161 AKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220
Query: 182 K 182
+
Sbjct: 221 Q 221
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 79.3 bits (194), Expect = 3e-15
Identities = 67/192 (34%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 9 PGEAKAEGAAPPTPSKPLTSFLIQDILRDG--------AQRQGGRTSSQRQRDPEPEP-- 58
P EA E P + L+ ++ DG + G + + P P P
Sbjct: 30 PSEAPREPVGWPARKRSLSVSSEEEEPDDGWKAPACFCPDQHGPKEQGPKHHPPIPFPCL 89
Query: 59 -EPEPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENT-SGALPRL 116
P+ GG G L P +P ++ E E GS SE G R
Sbjct: 90 GTPKGSGGSGPGG-----LERTPFLSPSHSDFKEEKERLLPAGSPSPGSERPRDGGAERQ 144
Query: 117 PQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRR 176
K K++R FS +QV +LE F ++YLS+ ERA LA +L+LTETQVK WFQNRR
Sbjct: 145 AGAAK---KKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRR 201
Query: 177 YKTKRKQLSSEL 188
K KR QLS+EL
Sbjct: 202 NKWKR-QLSAEL 212
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 78.6 bits (192), Expect = 4e-15
Identities = 59/148 (39%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 43 GGRTSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHL--G 100
GG + RD PE E GR+ GP A EA LA P
Sbjct: 126 GGLSPDTSDRD---SPETGEEMGRAEGAWPR---GPGPGAVQREAAELAARGPAAGTEEA 179
Query: 101 SYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKN 160
S L + +G +K++R FS +QV +LE F ++YLS+ ERA LA +
Sbjct: 180 SELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAAS 239
Query: 161 LKLTETQVKIWFQNRRYKTKRKQLSSEL 188
L+LTETQVKIWFQNRR K KR QL++EL
Sbjct: 240 LQLTETQVKIWFQNRRNKWKR-QLAAEL 266
Score = 34.3 bits (77), Expect = 0.095
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 11/115 (9%)
Query: 9 PGEAKAEGAAPPTPSKPLTSFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPEPEGGRSR 68
P E G A P + +SFLI+++L A+ G T R+ E E + +PE
Sbjct: 2 PDELTEPGRATPARA---SSFLIENLLAAEAKGAGRATQGDGSREDEEEDDDDPE----- 53
Query: 69 AGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYLLDSENTSGALPRLPQTPKQP 123
D R + LA T P + L G PR P P P
Sbjct: 54 ---DEDAEQARRRRLQRRRQLLAGTGPGGEARARALLGPGALGLGPRPPPGPGPP 105
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 78.2 bits (191), Expect = 6e-15
Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Query: 36 RDGAQRQGGRTSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEE-AETLAETE 94
RD A G+ S + E E + E + R R + +L G +P+ A LA E
Sbjct: 93 RDAAGPGAGQASPLEGSEAEEEEDAE-DPRRPRLRERAARLLPGLARSPDAPAGALASGE 151
Query: 95 PERHLGSYLLDSENTSGALPRLPQTPKQPQ----KRSRAAFSHTQVIELERKFSHQKYLS 150
P G + S S PR + +P +R+R AF++ Q++ LE KF +YLS
Sbjct: 152 PCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLS 211
Query: 151 APERAHLAKNLKLTETQVKIWFQNRRYKTKRK 182
ER +LA +L LTETQVKIWFQNRR K K++
Sbjct: 212 VCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 78.2 bits (191), Expect = 6e-15
Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Query: 36 RDGAQRQGGRTSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEE-AETLAETE 94
RD A G+ S + E E + E + R R + +L G +P+ A LA E
Sbjct: 93 RDAAGPGAGQASPLEGSEAEEEEDAE-DPRRPRLRERAARLLPGLARSPDAPAGALASGE 151
Query: 95 PERHLGSYLLDSENTSGALPRLPQTPKQPQ----KRSRAAFSHTQVIELERKFSHQKYLS 150
P G + S S PR + +P +R+R AF++ Q++ LE KF +YLS
Sbjct: 152 PCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLS 211
Query: 151 APERAHLAKNLKLTETQVKIWFQNRRYKTKRK 182
ER +LA +L LTETQVKIWFQNRR K K++
Sbjct: 212 VCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 78.2 bits (191), Expect = 6e-15
Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Query: 36 RDGAQRQGGRTSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEE-AETLAETE 94
RD A G+ S + E E + E + R R + +L G +P+ A LA E
Sbjct: 93 RDAAGPGAGQASPLEGSEAEEEEDAE-DPRRPRLRERAARLLPGLARSPDAPAGALASGE 151
Query: 95 PERHLGSYLLDSENTSGALPRLPQTPKQPQ----KRSRAAFSHTQVIELERKFSHQKYLS 150
P G + S S PR + +P +R+R AF++ Q++ LE KF +YLS
Sbjct: 152 PCEDGGGGPVRSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLS 211
Query: 151 APERAHLAKNLKLTETQVKIWFQNRRYKTKRK 182
ER +LA +L LTETQVKIWFQNRR K K++
Sbjct: 212 VCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243
>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
Length = 273
Score = 78.2 bits (191), Expect = 6e-15
Identities = 36/58 (62%), Positives = 43/58 (74%)
Query: 124 QKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 181
+++ R FS Q ELER+F Q+YLSAPER HLA ++LT TQVKIWFQN RYK KR
Sbjct: 128 KRKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKR 185
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 77.4 bits (189), Expect = 1e-14
Identities = 50/151 (33%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 38 GAQRQGGRTSSQRQRDPEPEPEPEPEGGRSR--AGAQNDQLSTGPRAAPEEAETLAETEP 95
G + G S Q+ P P P P + G + GP A+ A + P
Sbjct: 103 GGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFP 162
Query: 96 ---ERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAP 152
E S +S T+G P KR R A++ Q++ELE++F +YL P
Sbjct: 163 WMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRP 222
Query: 153 ERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 183
R +A L LTE Q+KIWFQNRR K K+ Q
Sbjct: 223 RRVEMANLLNLTERQIKIWFQNRRMKYKKDQ 253
>gi|50355978 T-cell leukemia homeobox 3 [Homo sapiens]
Length = 291
Score = 77.4 bits (189), Expect = 1e-14
Identities = 41/96 (42%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 114 PRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQ 173
P +TP + +K+ R +FS Q+ ELE++F QKYL++ ERA LAK+LK+T+ QVK WFQ
Sbjct: 157 PYQNRTPPK-RKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQ 215
Query: 174 NRRYKTKRKQLSSELGDLEKHSSLP-ALKEEAFSRA 208
NRR K +R+ + ++ S L L+ +AF ++
Sbjct: 216 NRRTKWRRQTAEEREAERQQASRLMLQLQHDAFQKS 251
>gi|7706621 T-cell leukemia homeobox 2 [Homo sapiens]
Length = 284
Score = 77.4 bits (189), Expect = 1e-14
Identities = 44/97 (45%), Positives = 67/97 (69%), Gaps = 6/97 (6%)
Query: 114 PRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQ 173
P +TP + +K+ R +FS +QV+ELER+F QKYL++ ERA LAK L++T+ QVK WFQ
Sbjct: 148 PYQNRTPPK-RKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQ 206
Query: 174 NRRYKTKRKQLSSELGDLEKHSS---LPALKEEAFSR 207
NRR K +R+ ++E + E+H + L L+++A R
Sbjct: 207 NRRTKWRRQ--TAEEREAERHRAGRLLLHLQQDALPR 241
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 77.0 bits (188), Expect = 1e-14
Identities = 45/99 (45%), Positives = 61/99 (61%), Gaps = 11/99 (11%)
Query: 100 GSYLLDS---ENTSGA-LPRLPQTPKQPQ-------KRSRAAFSHTQVIELERKFSHQKY 148
G++ LD +T+G LP++P Q Q +R R AF+ Q++ELE +F KY
Sbjct: 206 GTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKY 265
Query: 149 LSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSE 187
LS P+R +A +L LTETQVKIWFQNRR K KR + + E
Sbjct: 266 LSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKE 304
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 76.6 bits (187), Expect = 2e-14
Identities = 57/146 (39%), Positives = 74/146 (50%), Gaps = 19/146 (13%)
Query: 38 GAQRQGGRTSSQRQRDPEPEPEPEPEGGRSRAGAQNDQLSTGPRAAPEE--AETLAETEP 95
GA R G+ S+ + DP+ + E S +D TG A EE L ET P
Sbjct: 176 GAVRGQGKDESKVEDDPKGKEESFSL--ESDVDYSSDDNLTGQAAHKEEDPGHALEETPP 233
Query: 96 ERHLGSYLLDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERA 155
+SGA T K +R R AF+ Q++ELE++F +KYLS ER+
Sbjct: 234 -------------SSGAAGSTTSTGKN--RRRRTAFTSEQLLELEKEFHCKKYLSLTERS 278
Query: 156 HLAKNLKLTETQVKIWFQNRRYKTKR 181
+A LKL+E QVKIWFQNRR K KR
Sbjct: 279 QIAHALKLSEVQVKIWFQNRRAKWKR 304
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 75.9 bits (185), Expect = 3e-14
Identities = 52/139 (37%), Positives = 70/139 (50%), Gaps = 29/139 (20%)
Query: 48 SQRQRDPEPEPE----PEPEGGRSRAGAQNDQLSTGPRAAPEEAETLAETEPERHLGSYL 103
S RQR P P P P GG + G G P+ T A+ + +R
Sbjct: 42 STRQRPPGPRENSPVAPGPPGGAAAPG--------GAGTTPQGTATAAKPKRKR------ 87
Query: 104 LDSENTSGALPRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKL 163
S++ SG +R+R AF++ Q++ LE KF +YLS ER +LA +L L
Sbjct: 88 TGSDSKSGK-----------PRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSL 136
Query: 164 TETQVKIWFQNRRYKTKRK 182
TETQVKIWFQNRR K K++
Sbjct: 137 TETQVKIWFQNRRTKWKKQ 155
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 75.1 bits (183), Expect = 5e-14
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 54 PEPEPEPEPEGGRSRAGAQNDQLSTGPRAAP-----EEAETLAETEPERHLGSYLLDSEN 108
P P P P A N+ +P A+ + E + S +
Sbjct: 114 PTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSS 173
Query: 109 TSGALPRLPQTP--KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTET 166
+SG ++P + KR+R A++ Q++ELE++F +YL P R +A L LTE
Sbjct: 174 SSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTER 233
Query: 167 QVKIWFQNRRYKTKRKQ-----LSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYP 221
Q+KIWFQNRR K K+ Q L+S G S +P + S+ S+ NS PY P
Sbjct: 234 QIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN--SMHSLVNSVPYEP 291
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 75.1 bits (183), Expect = 5e-14
Identities = 55/180 (30%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 54 PEPEPEPEPEGGRSRAGAQNDQLSTGPRAAP-----EEAETLAETEPERHLGSYLLDSEN 108
P P P P A N+ +P A+ + E + S +
Sbjct: 114 PTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSS 173
Query: 109 TSGALPRLPQTP--KQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTET 166
+SG ++P + KR+R A++ Q++ELE++F +YL P R +A L LTE
Sbjct: 174 SSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTER 233
Query: 167 QVKIWFQNRRYKTKRKQ-----LSSELGDLEKHSSLPALKEEAFSRASLVSVYNSYPYYP 221
Q+KIWFQNRR K K+ Q L+S G S +P + S+ S+ NS PY P
Sbjct: 234 QIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLN--SMHSLVNSVPYEP 291
>gi|157743259 H6 family homeobox 3 [Homo sapiens]
Length = 357
Score = 75.1 bits (183), Expect = 5e-14
Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 120 PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKT 179
P +K++R FS +QV +LE F ++YLS+ ERA LA +L LTETQVKIWFQNRR K
Sbjct: 223 PACRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKW 282
Query: 180 KRKQLSSEL 188
KR QL++EL
Sbjct: 283 KR-QLAAEL 290
>gi|27886557 msh homeobox 2 [Homo sapiens]
Length = 267
Score = 75.1 bits (183), Expect = 5e-14
Identities = 74/240 (30%), Positives = 102/240 (42%), Gaps = 40/240 (16%)
Query: 4 VPEPRPGEAKAEGAAPPTPSKPLT-SFLIQDILRDGAQRQGGRTSSQRQRDPEPEPEPEP 62
V P PG AEGAA K + F ++ ++ D + P E P P
Sbjct: 21 VAGPGPGPGGAEGAAEERRVKVSSLPFSVEALMSD--------------KKPPKEASPLP 66
Query: 63 EGGRSRAGAQNDQL----------STGPRAAPEEAETLAETEPERHLGSYLLDSENTSGA 112
S L S GP P E ++ E G+ +
Sbjct: 67 AESASAGATLRPLLLSGHGAREAHSPGPLVKPFETASVKSENSED--GAAWMQEPGRYSP 124
Query: 113 LPR--LPQT----PKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTET 166
PR P T + ++ R F+ +Q++ LERKF ++YLS ERA + +L LTET
Sbjct: 125 PPRHMSPTTCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTET 184
Query: 167 QVKIWFQNRRYKTKRKQLSSELGDLEKHSS--LPALKEEAF---SRASLVSVYN-SYPYY 220
QVKIWFQNRR K KR Q +EL L+ + LP+ F S S+Y SYP++
Sbjct: 185 QVKIWFQNRRAKAKRLQ-EAELEKLKMAAKPMLPSSFSLPFPISSPLQAASIYGASYPFH 243
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 75.1 bits (183), Expect = 5e-14
Identities = 40/96 (41%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 114 PRLPQTPKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQ 173
P +TP + +K+ R +F+ Q+ ELE++F QKYL++ ERA LAK LK+T+ QVK WFQ
Sbjct: 192 PYQNRTPPK-KKKPRTSFTRLQICELEKRFHRQKYLASAERAALAKALKMTDAQVKTWFQ 250
Query: 174 NRRYKTKRKQLSSELGDLEK-HSSLPALKEEAFSRA 208
NRR K +R+ + ++ + L L++EAF ++
Sbjct: 251 NRRTKWRRQTAEEREAERQQANRILLQLQQEAFQKS 286
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,272,820
Number of Sequences: 37866
Number of extensions: 626577
Number of successful extensions: 4956
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 372
Number of HSP's that attempted gapping in prelim test: 3942
Number of HSP's gapped (non-prelim): 1227
length of query: 234
length of database: 18,247,518
effective HSP length: 99
effective length of query: 135
effective length of database: 14,498,784
effective search space: 1957335840
effective search space used: 1957335840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.