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Search of human proteins with 19923264
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923264 Ras-related protein Rab-27A [Homo sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34485711 Ras-related protein Rab-27A [Homo sapiens] 450 e-127
gi|34485709 Ras-related protein Rab-27A [Homo sapiens] 450 e-127
gi|34485706 Ras-related protein Rab-27A [Homo sapiens] 450 e-127
gi|19923264 Ras-related protein Rab-27A [Homo sapiens] 450 e-127
gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens] 322 2e-88
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 179 2e-45
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 178 4e-45
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 178 4e-45
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 175 3e-44
gi|16933567 mel transforming oncogene [Homo sapiens] 168 4e-42
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 167 5e-42
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 159 1e-39
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 156 1e-38
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 156 2e-38
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 155 3e-38
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 155 3e-38
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 155 3e-38
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 154 4e-38
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 151 5e-37
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 149 2e-36
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 148 3e-36
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens] 146 1e-35
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 146 2e-35
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 143 1e-34
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 141 4e-34
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 139 1e-33
gi|39930371 RAB39, member RAS oncogene family [Homo sapiens] 139 2e-33
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 135 3e-32
gi|116812567 RAB25 [Homo sapiens] 135 3e-32
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens] 132 2e-31
>gi|34485711 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 450 bits (1157), Expect = e-127
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG
Sbjct: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
Query: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH
Sbjct: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
Query: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL
Sbjct: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
Query: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC
Sbjct: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|34485709 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 450 bits (1157), Expect = e-127
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG
Sbjct: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
Query: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH
Sbjct: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
Query: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL
Sbjct: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
Query: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC
Sbjct: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|34485706 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 450 bits (1157), Expect = e-127
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG
Sbjct: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
Query: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH
Sbjct: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
Query: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL
Sbjct: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
Query: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC
Sbjct: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|19923264 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 450 bits (1157), Expect = e-127
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG
Sbjct: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
Query: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH
Sbjct: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
Query: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL
Sbjct: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
Query: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC
Sbjct: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 322 bits (824), Expect = 2e-88
Identities = 158/221 (71%), Positives = 185/221 (83%), Gaps = 3/221 (1%)
Query: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
M+DGDYDYLIK LALGDSGVGKT+ LY+YTD KFN KFITTVGIDFREKRVVY A GP+G
Sbjct: 1 MTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 60
Query: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
++G+ ++HLQLWDTAGQERFRSLTTAFFRDAMGFLL+FDLT++QSFLNVRNW+SQLQ +
Sbjct: 61 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 120
Query: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
AYCENPDIVL GNK+DL DQR V E +A LA+KYGIPYFETSAA G N+ +A+E LLDL
Sbjct: 121 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 180
Query: 181 IMKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
IMKRME+CV+K+ IP+ V NG S + E+ + C C
Sbjct: 181 IMKRMEQCVEKTQIPDTV---NGGNSGNLDGEKPPEKKCIC 218
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 179 bits (453), Expect = 2e-45
Identities = 90/220 (40%), Positives = 138/220 (62%), Gaps = 15/220 (6%)
Query: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
+D ++DY+ K L +G+S VGKTS L++Y D F F++TVGIDF+ K VYR
Sbjct: 15 ADQNFDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK-TVYR------- 66
Query: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
+RI LQ+WDTAGQER+R++TTA++R AMGFLL++D+ N++SF V++W +Q++ ++
Sbjct: 67 --HDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS 124
Query: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
+ +N ++L GNK DLED+RVV E+ LA+ G +FE SA N+ Q E L+D+I
Sbjct: 125 W-DNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
Query: 182 MKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
++M ++ P SNG + + +C C
Sbjct: 184 CEKMNESLE----PSSSSGSNGKGPAVGDAPAPQPSSCSC 219
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 178 bits (451), Expect = 4e-45
Identities = 84/189 (44%), Positives = 129/189 (68%), Gaps = 11/189 (5%)
Query: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
SD ++DY+ K L +G+S VGKTS L++Y D F S F++TVGIDF+ K V
Sbjct: 23 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNE------ 76
Query: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
+RI LQ+WDTAGQER+R++TTA++R AMGF+L++D+TNE+SF V++W +Q++ ++
Sbjct: 77 ----KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 132
Query: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
+ +N ++L GNK D+ED+RV+ E L E+ G +FETSA + N+ Q E L+D+I
Sbjct: 133 W-DNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDII 191
Query: 182 MKRMERCVD 190
+M ++
Sbjct: 192 CDKMSESLE 200
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 178 bits (451), Expect = 4e-45
Identities = 91/218 (41%), Positives = 139/218 (63%), Gaps = 12/218 (5%)
Query: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
SD ++DY+ K L +G+S VGKTS L++Y D F F++TVGIDF+ K +YR
Sbjct: 15 SDQNFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK-TIYR------- 66
Query: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
+RI LQ+WDTAGQER+R++TTA++R AMGF+L++D+TNE+SF V++W +Q++ ++
Sbjct: 67 --NDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS 124
Query: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
+ +N ++L GNK D+ED+RVV E LA+ G +FE SA + N+ Q E L+D+I
Sbjct: 125 W-DNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 183
Query: 182 MKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGAC 219
++M +D + P G +DQ + AC
Sbjct: 184 CEKMSESLDTA-DPAVTGAKQGPQLSDQQVPPHQDCAC 220
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 175 bits (443), Expect = 3e-44
Identities = 90/220 (40%), Positives = 140/220 (63%), Gaps = 15/220 (6%)
Query: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
SD ++DY+ K L +G+S VGKTS L++Y D F F++TVGIDF+ K VYR
Sbjct: 15 SDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVK-TVYRHE----- 68
Query: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
+R+ LQ+WDTAGQER+R++TTA++R AMGF+L++D+TNE+SF V++W +Q++ ++
Sbjct: 69 ----KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS 124
Query: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
+ +N ++L GNK D+E++RVV E+ LAE+ G +FE SA ++ QA E L+D I
Sbjct: 125 W-DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 183
Query: 182 MKRMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGACGC 221
+M +D G ++ + T L ++ C C
Sbjct: 184 CDKMSDSLDTDPSMLGSSKNTRLSDTPPLLQQN----CSC 219
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 168 bits (425), Expect = 4e-42
Identities = 85/182 (46%), Positives = 121/182 (66%), Gaps = 11/182 (6%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
YDYL K L +GDSGVGKT VL+++++ FNS FI+T+GIDF+ + + G
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD----------G 54
Query: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
+RI LQ+WDTAGQERFR++TTA++R AMG +L++D+TNE+SF N+RNWI ++ HA +
Sbjct: 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV 114
Query: 126 PDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRM 185
++L GNK D+ D+R V +E LA YGI + ETSA N+ A L I +M
Sbjct: 115 EKMIL-GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173
Query: 186 ER 187
++
Sbjct: 174 DK 175
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 167 bits (424), Expect = 5e-42
Identities = 83/187 (44%), Positives = 126/187 (67%), Gaps = 11/187 (5%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
YDYL K L +GDSGVGKT +L+++++ FN+ FI+T+GIDF+ + + G
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELD----------G 54
Query: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
++I LQ+WDTAGQERFR++TTA++R AMG +L++D+TNE+SF N++NWI ++ HA +
Sbjct: 55 KKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDV 114
Query: 126 PDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRM 185
++L GNK D+ D+R V +E LA YGI + ETSA + N+ +A L IM ++
Sbjct: 115 ERMIL-GNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKL 173
Query: 186 ERCVDKS 192
R ++ S
Sbjct: 174 NRKMNDS 180
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 159 bits (403), Expect = 1e-39
Identities = 80/184 (43%), Positives = 124/184 (67%), Gaps = 11/184 (5%)
Query: 1 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDG 60
M+ YD L K L +GDSGVGKT VL++++D FN+ FI+T+GIDF+ K V +
Sbjct: 1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQ------ 54
Query: 61 ATGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 120
G++I LQ+WDTAGQERF ++TT+++R AMG +L++D+TN +SF N+ W+ + H
Sbjct: 55 ----GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEH 110
Query: 121 AYCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDL 180
A E+ + +L GNK D++D+RVV + + +A ++GI +FETSA NI +A L +
Sbjct: 111 AN-EDVERMLLGNKCDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAED 169
Query: 181 IMKR 184
I+++
Sbjct: 170 ILRK 173
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 156 bits (395), Expect = 1e-38
Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 24/216 (11%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRASGPDGATGR 64
YD K + LGD+GVGKT L Q+ DG F S FI TVGIDFR K V T
Sbjct: 26 YDLTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVV----------TVD 75
Query: 65 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCE 124
G R+ LQ+WDTAGQERFRS+T A++RDA LLL+D+TN+ SF N+R W++++ H Y +
Sbjct: 76 GVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEI--HEYAQ 133
Query: 125 NPDIV-LCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMK 183
++ L GNK+D+ +RV++ E+ LA +YG+P+ ETSA G N+ A + +
Sbjct: 134 RDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKY 193
Query: 184 RMERCVDKSWIPEGVVRSNGHASTDQLSEEKEKGAC 219
R D+ P +R D + +K++ +C
Sbjct: 194 RAGHQADE---PSFQIR-------DYVESQKKRSSC 219
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 156 bits (394), Expect = 2e-38
Identities = 76/179 (42%), Positives = 125/179 (69%), Gaps = 12/179 (6%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
YD+L K L +GDSGVGKT ++ ++ + FN+ +I+T+GIDF+ + V G
Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIE----------G 54
Query: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
++I LQ+WDTAGQERF+++TTA++R AMG +L++D+T+E+SF N++NW+ ++ +A
Sbjct: 55 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENA-SAG 113
Query: 126 PDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLL-DLIMK 183
+ +L GNK D+E +R V++E+A LA ++GI +FETSA + N+ +A L D+++K
Sbjct: 114 VERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 172
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 155 bits (391), Expect = 3e-38
Identities = 76/179 (42%), Positives = 123/179 (68%), Gaps = 12/179 (6%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
YD+L K L +GDSGVGKT ++ ++ + FN+ +I+T+GIDF+ + V G
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIE----------G 178
Query: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
++I LQ+WDTAGQERF+++TTA++R AMG +L +D+T+E+SF N++NW+ + +A
Sbjct: 179 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENA-SAG 237
Query: 126 PDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLL-DLIMK 183
+ +L GNK D+E +R V++E+A LA ++GI +FETSA + N+ +A L D+++K
Sbjct: 238 VEHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 296
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 155 bits (391), Expect = 3e-38
Identities = 76/179 (42%), Positives = 123/179 (68%), Gaps = 12/179 (6%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
YD+L K L +GDSGVGKT ++ ++ + FN+ +I+T+GIDF+ + V G
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIE----------G 178
Query: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
++I LQ+WDTAGQERF+++TTA++R AMG +L +D+T+E+SF N++NW+ + +A
Sbjct: 179 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENA-SAG 237
Query: 126 PDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLL-DLIMK 183
+ +L GNK D+E +R V++E+A LA ++GI +FETSA + N+ +A L D+++K
Sbjct: 238 VEHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 296
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 155 bits (391), Expect = 3e-38
Identities = 76/179 (42%), Positives = 123/179 (68%), Gaps = 12/179 (6%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
YD+L K L +GDSGVGKT ++ ++ + FN+ +I+T+GIDF+ + V G
Sbjct: 129 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIE----------G 178
Query: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
++I LQ+WDTAGQERF+++TTA++R AMG +L +D+T+E+SF N++NW+ + +A
Sbjct: 179 KKIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENA-SAG 237
Query: 126 PDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLL-DLIMK 183
+ +L GNK D+E +R V++E+A LA ++GI +FETSA + N+ +A L D+++K
Sbjct: 238 VEHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLK 296
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 154 bits (390), Expect = 4e-38
Identities = 76/181 (41%), Positives = 119/181 (65%), Gaps = 11/181 (6%)
Query: 5 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGR 64
+YDYL K L +GDSGVGK+ +L ++ D + +I+T+G+DF+ + + DG T
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-----DGKT-- 56
Query: 65 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCE 124
I LQ+WDTAGQERFR++T++++R A G ++++D+T+++S+ NV+ W+ ++ +A E
Sbjct: 57 ---IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA-SE 112
Query: 125 NPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKR 184
N + +L GNKSDL ++VV A A+ GIP+ ETSA N TN+ QA + I KR
Sbjct: 113 NVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKR 172
Query: 185 M 185
M
Sbjct: 173 M 173
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 151 bits (381), Expect = 5e-37
Identities = 75/181 (41%), Positives = 118/181 (65%), Gaps = 11/181 (6%)
Query: 5 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGR 64
+YDYL K L +GDSGVGK+ +L ++ D + +I+T+G+DF+ + + DG T
Sbjct: 7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-----DGKT-- 59
Query: 65 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCE 124
I LQ+WDTAGQERFR++T++++R A G ++++D+T+++SF NV+ W+ ++ +A E
Sbjct: 60 ---IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SE 115
Query: 125 NPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKR 184
N + +L GNK DL ++VV A A+ GIP+ ETSA N TN+ Q+ + I KR
Sbjct: 116 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 175
Query: 185 M 185
M
Sbjct: 176 M 176
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 149 bits (376), Expect = 2e-36
Identities = 67/179 (37%), Positives = 118/179 (65%), Gaps = 12/179 (6%)
Query: 5 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGR 64
DYD+L K L +GDSGVGK+S+L ++ D F+ +ITT+G+DF+ + V
Sbjct: 4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN---------- 53
Query: 65 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCE 124
G+++ LQ+WDTAGQERFR++T+ ++R G ++++D+T+ +SF+NV+ W+ ++ + C+
Sbjct: 54 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN--CD 111
Query: 125 NPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMK 183
+ +L GNK+D +++VV+ E+A A + GI FETSA N+ + + +L+++
Sbjct: 112 DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 170
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 148 bits (374), Expect = 3e-36
Identities = 85/213 (39%), Positives = 124/213 (58%), Gaps = 24/213 (11%)
Query: 9 LIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRASGPDGATGRGQR 67
L K + +GDSGVGKTS+L Q+ GKF F TVGI F K V T G R
Sbjct: 22 LHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVV----------TVDGVR 71
Query: 68 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD 127
+ LQ+WDTAGQERFRS+T A++RDA LLL+D+TN+ SF N+R W++++ H Y +
Sbjct: 72 VKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEI--HEYAQRDV 129
Query: 128 IV-LCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRME 186
++ L GNK+D+ +RV++ E+ LA +YG+P+ ETSA G N+ A + + R
Sbjct: 130 VIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAG 189
Query: 187 RCVDKSWIPEGVVRSNGHASTDQLSEEKEKGAC 219
D+ P +R D + +K++ +C
Sbjct: 190 HQADE---PSFQIR-------DYVESQKKRSSC 212
>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
Length = 213
Score = 146 bits (369), Expect = 1e-35
Identities = 81/212 (38%), Positives = 126/212 (59%), Gaps = 14/212 (6%)
Query: 8 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQR 67
Y + + +GDS VGK+ ++ ++T+G+F TVG+DF + V G+R
Sbjct: 7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEP---------GKR 57
Query: 68 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD 127
I LQ+WDTAGQERFRS+T A++R+++G LLLFD+TN +SF NV W+ + ++H
Sbjct: 58 IKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIV 117
Query: 128 IVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAI-EMLLDL--IMKR 184
VL G+K DL+ QR V EA LA YG+ Y ETSA + N+ +A ++ D+ ++KR
Sbjct: 118 FVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKR 177
Query: 185 MERCVDKSW--IPEGVVRSNGHASTDQLSEEK 214
E + + W + G V + H+S + + E+
Sbjct: 178 GEITIQEGWEGVKSGFVPNVVHSSEEVVKSER 209
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 146 bits (368), Expect = 2e-35
Identities = 79/181 (43%), Positives = 116/181 (64%), Gaps = 14/181 (7%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRASGPDGATGR 64
YD K + +GDSGVGKT +L ++ DG F + FI+TVGIDFR K +
Sbjct: 60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD---------- 109
Query: 65 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCE 124
G ++ LQ+WDTAGQERFRS+T A++RDA LLL+D+TN+ SF N++ W++++ H Y +
Sbjct: 110 GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI--HEYAQ 167
Query: 125 NP-DIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMK 183
+ ++L GNK D +RVVK E+ LA++YG+P+ ETSA G N+ A + + +
Sbjct: 168 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQ 227
Query: 184 R 184
R
Sbjct: 228 R 228
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 143 bits (361), Expect = 1e-34
Identities = 75/181 (41%), Positives = 116/181 (64%), Gaps = 11/181 (6%)
Query: 3 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGAT 62
D +YDYL K + +GDSGVGK+++L ++T +FN + +T+G++F + + DG T
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-----DGKT 59
Query: 63 GRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 122
I Q+WDTAGQER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ HA
Sbjct: 60 -----IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA- 113
Query: 123 CENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIM 182
N I+L GNKSDL R V +EA A AEK G+ + ETSA + TN+ A + +L I
Sbjct: 114 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
Query: 183 K 183
+
Sbjct: 174 R 174
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 141 bits (356), Expect = 4e-34
Identities = 74/181 (40%), Positives = 116/181 (64%), Gaps = 11/181 (6%)
Query: 3 DGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGAT 62
D +YDYL K + +GDSGVGK+++L ++T +FN + +T+G++F + + DG T
Sbjct: 5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-----DGKT 59
Query: 63 GRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY 122
I Q+WDTAGQER+R++T+A++R A+G LL++D+ ++ NV W+ +L+ HA
Sbjct: 60 -----IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA- 113
Query: 123 CENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIM 182
N I+L GNKSDL R V +EA A AEK + + ETSA + TN+ +A + +L I
Sbjct: 114 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 173
Query: 183 K 183
+
Sbjct: 174 R 174
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 139 bits (351), Expect = 1e-33
Identities = 76/204 (37%), Positives = 121/204 (59%), Gaps = 12/204 (5%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
Y YL K++ +GD+GVGK+ +L Q+TD +F T+G++F + + T G
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMI----------TIDG 52
Query: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
++I LQ+WDTAGQE FRS+T +++R A G LL++D+T +F ++ W+ + H+ N
Sbjct: 53 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN-SN 111
Query: 126 PDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQA-IEMLLDLIMKR 184
I+L GNKSDLE +R VK+EE A A ++G+ + ETSA +N+ +A I ++ K
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171
Query: 185 MERCVDKSWIPEGVVRSNGHASTD 208
E D + G+ HA+T+
Sbjct: 172 QEGVFDINNEANGIKIGPQHAATN 195
>gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 139 bits (350), Expect = 2e-33
Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 21/223 (9%)
Query: 8 YLIKFLALGDSGVGKTSVLYQYTDGKF----NSKFITTVGIDFREKRVVYRASGPDGATG 63
Y + + +GDS VGK+ +L+++T G+F + TVG+DF + +
Sbjct: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-------- 58
Query: 64 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYC 123
G+RI LQLWDTAGQERFRS+T +++R+++G L+FD+TN +SF +V++W+ + +M+
Sbjct: 59 -GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQP 117
Query: 124 ENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEML---LDL 180
+L G+K DL QR V EEA L+ G+ Y ETSA + TN+ ++ +L +
Sbjct: 118 FRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYE 177
Query: 181 IMKRMERCVDKSW--IPEGVVRSNGHASTDQLSEEKEKGACGC 221
++K+ E C+ W + G V + H+S + + KE C C
Sbjct: 178 LIKKGEICIQDGWEGVKSGFVPNTVHSSEEAVKPRKE---CFC 217
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 135 bits (340), Expect = 3e-32
Identities = 68/168 (40%), Positives = 106/168 (63%), Gaps = 11/168 (6%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
Y YL K++ +GD+GVGK+ +L Q+TD +F T+G++F + V G
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID----------G 52
Query: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
++I LQ+WDTAGQE FRS+T +++R A G LL++D+T ++F ++ +W+ + H+ N
Sbjct: 53 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSN 111
Query: 126 PDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQA 173
I+L GNKSDLE +R VK EE A A ++G+ + ETSA N+ +A
Sbjct: 112 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 159
>gi|116812567 RAB25 [Homo sapiens]
Length = 213
Score = 135 bits (340), Expect = 3e-32
Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 21/222 (9%)
Query: 2 SDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGA 61
++ DY+++ K + +G+SGVGKT++L ++T +F+ TT+G++F + V+ +
Sbjct: 5 TEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA---- 60
Query: 62 TGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 121
+ Q+WDTAG ER+R++T+A++R A+G LL+FDLT Q++ V W+ +L HA
Sbjct: 61 ------VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA 114
Query: 122 YCENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLI 181
++L GNKSDL R V EEA AE G+ + ETSA + TN+ A E +L I
Sbjct: 115 EA-TIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 173
Query: 182 MKRMERCVDKSWIPEGVVRSN----GHASTDQLSEEKEKGAC 219
++ + S +R+N G A Q EK AC
Sbjct: 174 FAKVSKQRQNS------IRTNAITLGSAQAGQEPGPGEKRAC 209
>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 132 bits (333), Expect = 2e-31
Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 19/222 (8%)
Query: 6 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRG 65
YD+L KFL +G++G GK+ +L+Q+ + KF T+G++F K + G
Sbjct: 10 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKII----------NVGG 59
Query: 66 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCEN 125
+ + LQ+WDTAGQERFRS+T +++R A G LL++D+T+ +++ + NW++ +M A +N
Sbjct: 60 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQN 118
Query: 126 PDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIMKRM 185
I+LCGNK DL+ R V EA A++ + + ETSA G N+ +A I+ ++
Sbjct: 119 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 178
Query: 186 ERC-VDKSWIPEGVVRSNGHASTDQLSEEKEKGA-----CGC 221
E +D + G+ G A+ QL + A CGC
Sbjct: 179 ESGELDPERMGSGI--QYGDAALRQLRSPRRAQAPNAQECGC 218
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,046,430
Number of Sequences: 37866
Number of extensions: 315935
Number of successful extensions: 1274
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 243
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.