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Search of human proteins with 19923050
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19923050 death effector domain-containing DNA binding
protein 2 [Homo sapiens]
(326 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19923050 death effector domain-containing DNA binding protei... 646 0.0
gi|89353287 death effector domain-containing protein [Homo sapiens] 250 1e-66
gi|89353285 death effector domain-containing protein [Homo sapiens] 250 1e-66
gi|14670394 death effector domain-containing protein [Homo sapiens] 250 1e-66
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 41 0.002
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 40 0.002
gi|50083281 KIAA1853 protein [Homo sapiens] 40 0.004
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 39 0.005
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 38 0.011
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 38 0.014
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.018
gi|153251865 hypothetical protein LOC84226 [Homo sapiens] 37 0.024
gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens] 37 0.031
gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens] 37 0.031
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 37 0.031
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 37 0.031
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 37 0.031
gi|50962882 G patch domain containing 8 [Homo sapiens] 37 0.031
gi|239757603 PREDICTED: hypothetical protein [Homo sapiens] 36 0.041
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 36 0.041
gi|239752105 PREDICTED: hypothetical protein [Homo sapiens] 36 0.041
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 36 0.041
gi|57242766 hypothetical protein LOC168455 [Homo sapiens] 36 0.041
gi|169168296 PREDICTED: hypothetical protein [Homo sapiens] 36 0.053
gi|169168044 PREDICTED: hypothetical protein [Homo sapiens] 36 0.053
gi|169167512 PREDICTED: hypothetical protein [Homo sapiens] 36 0.053
gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [H... 36 0.053
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 36 0.053
gi|4758216 dishevelled 2 [Homo sapiens] 35 0.069
gi|239753154 PREDICTED: hypothetical protein [Homo sapiens] 35 0.069
>gi|19923050 death effector domain-containing DNA binding protein 2
[Homo sapiens]
Length = 326
Score = 646 bits (1666), Expect = 0.0
Identities = 326/326 (100%), Positives = 326/326 (100%)
Query: 1 MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLLDEAPGAAGGLA 60
MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLLDEAPGAAGGLA
Sbjct: 1 MALSGSTPAPCWEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFLLDEAPGAAGGLA 60
Query: 61 RARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTS 120
RARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTS
Sbjct: 61 RARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTS 120
Query: 121 SSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQ 180
SSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQ
Sbjct: 121 SSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQ 180
Query: 181 QQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLR 240
QQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLR
Sbjct: 181 QQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLR 240
Query: 241 SRDLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVD 300
SRDLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVD
Sbjct: 241 SRDLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVD 300
Query: 301 EADYEAGRRRLLLMEEEGGRRPTEAS 326
EADYEAGRRRLLLMEEEGGRRPTEAS
Sbjct: 301 EADYEAGRRRLLLMEEEGGRRPTEAS 326
>gi|89353287 death effector domain-containing protein [Homo sapiens]
Length = 318
Score = 250 bits (638), Expect = 1e-66
Identities = 139/310 (44%), Positives = 196/310 (63%), Gaps = 21/310 (6%)
Query: 12 WEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFL-LDEAPGAAGGLARARSGLELLL 70
W E+ +G+ SLHRMF++VG LT ++ +L+FL +D GL R +G + LL
Sbjct: 12 WPEEHGEQEHGLYSLHRMFDIVGTHLTHRDVRVLSFLFVDVIDDHERGLIR--NGRDFLL 69
Query: 71 ELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPE---RYSYGTSSSSKRTE 127
LER+G+CDESN R + QLLR++ RHDLLP++ KRRR V P+ +Y TS
Sbjct: 70 ALERQGRCDESNFRQVLQLLRIITRHDLLPYVTLKRRRAVCPDLVDKYLEETSIRYVTPR 129
Query: 128 GSCRRRRQSSSSANSQQGQWE-----TGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQ 182
+ + + + T P +R +RGR + G++R+RR
Sbjct: 130 ALSDPEPRPPQPSKTVPPHYPVVCCPTSGPQMCSKRPARGRATLGSQRKRR--------- 180
Query: 183 SEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLRSR 242
+ P + K TCDIRLRVRAEYC+H AL+ V S + L RQ + F QA +L+SR
Sbjct: 181 -KSVTPDPKEKQTCDIRLRVRAEYCQHETALQGNVFSNKQDPLERQFERFNQANTILKSR 239
Query: 243 DLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVDEA 302
DLGS++CDIKFSEL+YLDAFW DY++G+LL+AL+GVF+T++L++AVG EA++LLV+VDE
Sbjct: 240 DLGSIICDIKFSELTYLDAFWRDYINGSLLEALKGVFITDSLKQAVGHEAIKLLVNVDEE 299
Query: 303 DYEAGRRRLL 312
DYE GR++LL
Sbjct: 300 DYELGRQKLL 309
>gi|89353285 death effector domain-containing protein [Homo sapiens]
Length = 318
Score = 250 bits (638), Expect = 1e-66
Identities = 139/310 (44%), Positives = 196/310 (63%), Gaps = 21/310 (6%)
Query: 12 WEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFL-LDEAPGAAGGLARARSGLELLL 70
W E+ +G+ SLHRMF++VG LT ++ +L+FL +D GL R +G + LL
Sbjct: 12 WPEEHGEQEHGLYSLHRMFDIVGTHLTHRDVRVLSFLFVDVIDDHERGLIR--NGRDFLL 69
Query: 71 ELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPE---RYSYGTSSSSKRTE 127
LER+G+CDESN R + QLLR++ RHDLLP++ KRRR V P+ +Y TS
Sbjct: 70 ALERQGRCDESNFRQVLQLLRIITRHDLLPYVTLKRRRAVCPDLVDKYLEETSIRYVTPR 129
Query: 128 GSCRRRRQSSSSANSQQGQWE-----TGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQ 182
+ + + + T P +R +RGR + G++R+RR
Sbjct: 130 ALSDPEPRPPQPSKTVPPHYPVVCCPTSGPQMCSKRPARGRATLGSQRKRR--------- 180
Query: 183 SEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLRSR 242
+ P + K TCDIRLRVRAEYC+H AL+ V S + L RQ + F QA +L+SR
Sbjct: 181 -KSVTPDPKEKQTCDIRLRVRAEYCQHETALQGNVFSNKQDPLERQFERFNQANTILKSR 239
Query: 243 DLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVDEA 302
DLGS++CDIKFSEL+YLDAFW DY++G+LL+AL+GVF+T++L++AVG EA++LLV+VDE
Sbjct: 240 DLGSIICDIKFSELTYLDAFWRDYINGSLLEALKGVFITDSLKQAVGHEAIKLLVNVDEE 299
Query: 303 DYEAGRRRLL 312
DYE GR++LL
Sbjct: 300 DYELGRQKLL 309
>gi|14670394 death effector domain-containing protein [Homo sapiens]
Length = 318
Score = 250 bits (638), Expect = 1e-66
Identities = 139/310 (44%), Positives = 196/310 (63%), Gaps = 21/310 (6%)
Query: 12 WEEDECLDYYGMLSLHRMFEVVGGQLTECELELLAFL-LDEAPGAAGGLARARSGLELLL 70
W E+ +G+ SLHRMF++VG LT ++ +L+FL +D GL R +G + LL
Sbjct: 12 WPEEHGEQEHGLYSLHRMFDIVGTHLTHRDVRVLSFLFVDVIDDHERGLIR--NGRDFLL 69
Query: 71 ELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPE---RYSYGTSSSSKRTE 127
LER+G+CDESN R + QLLR++ RHDLLP++ KRRR V P+ +Y TS
Sbjct: 70 ALERQGRCDESNFRQVLQLLRIITRHDLLPYVTLKRRRAVCPDLVDKYLEETSIRYVTPR 129
Query: 128 GSCRRRRQSSSSANSQQGQWE-----TGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQ 182
+ + + + T P +R +RGR + G++R+RR
Sbjct: 130 ALSDPEPRPPQPSKTVPPHYPVVCCPTSGPQMCSKRPARGRATLGSQRKRR--------- 180
Query: 183 SEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQALARQLDVFGQATAVLRSR 242
+ P + K TCDIRLRVRAEYC+H AL+ V S + L RQ + F QA +L+SR
Sbjct: 181 -KSVTPDPKEKQTCDIRLRVRAEYCQHETALQGNVFSNKQDPLERQFERFNQANTILKSR 239
Query: 243 DLGSVVCDIKFSELSYLDAFWGDYLSGALLQALRGVFLTEALREAVGREAVRLLVSVDEA 302
DLGS++CDIKFSEL+YLDAFW DY++G+LL+AL+GVF+T++L++AVG EA++LLV+VDE
Sbjct: 240 DLGSIICDIKFSELTYLDAFWRDYINGSLLEALKGVFITDSLKQAVGHEAIKLLVNVDEE 299
Query: 303 DYEAGRRRLL 312
DYE GR++LL
Sbjct: 300 DYELGRQKLL 309
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 40.8 bits (94), Expect = 0.002
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 104 RKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQR-RSRG 162
+ RR S R S+ SSS + S R R +S S ++S ++ S + R+R RSRG
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS---QSRSRSSSRERSRSRG 253
Query: 163 RPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRP 222
S + R RG+ ++P+++S + SS + R R R+ G ++ SR P
Sbjct: 254 SKSRSSSRSHRGS-SSPRKRSYSSSSSSPER----NRKRSRSRSSSSGDRKKRRTRSRSP 308
Query: 223 QA 224
++
Sbjct: 309 ES 310
Score = 37.0 bits (84), Expect = 0.024
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 100 PHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWE--------TGS 151
P +R R R S S + S S E S R +S SS+ S +G + S
Sbjct: 220 PSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSS 279
Query: 152 PPTKRQRRSRGRPSG-GARRRRRGAPAAPQQQ 182
P + ++RSR R S G R++RR +P+ Q
Sbjct: 280 SPERNRKRSRSRSSSSGDRKKRRTRSRSPESQ 311
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 40.4 bits (93), Expect = 0.002
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 104 RKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQR-RSRG 162
+ RR S R S+ SSS + S R R +S S ++S ++ S + R+R RSRG
Sbjct: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS---QSRSRSSSRERSRSRG 253
Query: 163 RPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRP 222
S + R RG+ ++P+++S + SS + R R R+ G ++ SR P
Sbjct: 254 SKSRSSSRSHRGS-SSPRKRSYSSSSSSPER----NRKRSRSRSSSSGDRKKRRTRSRSP 308
Query: 223 Q 223
+
Sbjct: 309 E 309
Score = 37.4 bits (85), Expect = 0.018
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 100 PHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWE--------TGS 151
P +R R R S S + S S E S R +S SS+ S +G + S
Sbjct: 220 PSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSS 279
Query: 152 PPTKRQRRSRGRPSG-GARRRRRGAPAAPQQQSEPARPSS 190
P + ++RSR R S G R++RR +P+++ + SS
Sbjct: 280 SPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSS 319
Score = 37.0 bits (84), Expect = 0.024
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRG 162
+R R SP + SY +SSSS E + +R R SSS+ ++ + P +R R S G
Sbjct: 260 SRSHRGSSSPRKRSYSSSSSSP--ERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSG 317
Query: 163 RPSGGAR 169
G+R
Sbjct: 318 SSHSGSR 324
>gi|50083281 KIAA1853 protein [Homo sapiens]
Length = 611
Score = 39.7 bits (91), Expect = 0.004
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 26/123 (21%)
Query: 104 RKRRR-----PVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQR 158
+KRRR P ++ +S KR ++RR SSSS S++ + + ++
Sbjct: 118 KKRRRSSSYSPSPVKKKKKKSSKKHKRRRSFSKKRRHSSSSPKSKRRDEK------RHKK 171
Query: 159 RSRGRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVA 218
+SR RP R R P+ + QS +RPSS C+ R R G + E+G
Sbjct: 172 QSRSRPRKSHRHRHHRCPS--RSQSSESRPSS-----CESRHR--------GRSPEEGQK 216
Query: 219 SRR 221
SRR
Sbjct: 217 SRR 219
Score = 32.3 bits (72), Expect = 0.59
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 103 ARKRRRPVSPERYSYGTSSS--SKRTEGSCRRR-------RQSSSSANSQQGQWETGSPP 153
AR+RRR SP R S S R S R+R SSS + S W + S
Sbjct: 483 ARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYSSSSS 542
Query: 154 TKRQRR-SRGRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRA 204
R SR R +RRR R ++ P+ P S + R R R+
Sbjct: 543 RSASRSYSRSRSRSRSRRRSRTRTSSSSSSRSPS-PGSRSRSRSRSRSRSRS 593
Score = 28.5 bits (62), Expect = 8.5
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 19/110 (17%)
Query: 95 RHDLLPHLARKR-----RRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWET 149
R D HL +R +RP+ R S +S S T SSSS+ S +
Sbjct: 497 RRDSPSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSW-----YSSSSSRSASRSYSR 551
Query: 150 GSPPTKRQRRSRGR---------PSGGARRRRRGAPAAPQQQSEPARPSS 190
++ +RRSR R PS G+R R R + + +R S
Sbjct: 552 SRSRSRSRRRSRTRTSSSSSSRSPSPGSRSRSRSRSRSRSRSRSQSRSYS 601
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 39.3 bits (90), Expect = 0.005
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 105 KRRRPVSPERYSYGTSSSSKRTEG------SCRRRRQSSSSANSQQGQWETGSPPTKRQR 158
+R R S ER + SSSK + S R+R+ S S N ++ + ++ SP +R+
Sbjct: 498 RRSRSPSKERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREH 557
Query: 159 RSRGRPSGGARRRRRGAPAAPQQQSEPARPSSE 191
R PS RRR +P+ +++ + +R SSE
Sbjct: 558 RQSRSPSKERDRRRWRSPSKERERRQ-SRSSSE 589
Score = 35.8 bits (81), Expect = 0.053
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 95 RHDLLPHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQS-SSSANSQQGQWETGSPP 153
R P R+RR+ SP + + S S E R RQS S S + +W + P
Sbjct: 522 RRSRSPSKERQRRQSRSPNKERDRSQSRSPSEE---REHRQSRSPSKERDRRRWRS---P 575
Query: 154 TKRQRRSRGRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEH 209
+K + R + R S R R +P +QS +RP + K R R ++ H
Sbjct: 576 SKERERRQSRSSSEERDHSRS--RSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNH 629
Score = 35.4 bits (80), Expect = 0.069
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 100 PHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRR 159
P+ AR R R SP + + S E RR R S +Q + S + RR
Sbjct: 467 PNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSR---SSSKERDHRR 523
Query: 160 SRGRPSGGARRRRRGAPAAPQQQSEPARPSSE 191
SR PS +RR+ +P + +S+ PS E
Sbjct: 524 SRS-PSKERQRRQSRSPNKERDRSQSRSPSEE 554
Score = 33.5 bits (75), Expect = 0.26
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 107 RRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSG 166
R P +S+ SSS +R + SSS + G+ ++GS P K++ SR R
Sbjct: 357 RNPSKERSHSHSRSSSKERDH-------RGSSSPRKESGRSQSGS-PNKQRDHSRSRSPN 408
Query: 167 GARRRRRGAPAAPQQQSEPARPSSEGK 193
AR R R +P + + +R S K
Sbjct: 409 KARDRSRS--RSPYKARDRSRSRSPNK 433
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 100 PHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRR 159
P+ AR R R SP + S+ + R R S S + ++ + GSP +R R
Sbjct: 443 PYKARDRSRSRSPNK----ARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHR 498
Query: 160 SRGRPSGGARRRRRGAPAAPQQQSEPARPSSE 191
PS + R+ + + + PS E
Sbjct: 499 RSRSPSKERQCRQSRSSSKERDHRRSRSPSKE 530
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 38.1 bits (87), Expect = 0.011
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQR-RSR 161
+R R R S R Y S S RT R R +S S ++++ + ++ S R R RSR
Sbjct: 130 SRSRSRSRSRSRSRYSRSKSRSRTRS---RSRSTSKSRSARRSKSKSSSVSRSRSRSRSR 186
Query: 162 GRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVT 195
R +R + + + +S P P EG V+
Sbjct: 187 SRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVS 220
Score = 35.0 bits (79), Expect = 0.091
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 87 GQLLRV-LARHDLLPHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQG 145
G+ LRV +AR+ P RR P P RY G R+ RR R S S + +
Sbjct: 82 GRELRVQMARYGRPPDSHHSRRGP-PPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRS 140
Query: 146 QWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQSEPARPSSEGK 193
+ ++ + RSR R + +R RR + +R S +
Sbjct: 141 RSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSR 188
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 37.7 bits (86), Expect = 0.014
Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 104 RKRRRPVSPE---------RYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPT 154
RK R SP R S SS S RT + SSSS++S + + + SPP
Sbjct: 1406 RKACRSASPSSQGWQGRRGRNSRSVSSGSNRTSEASS---SSSSSSSSSRSRSRSLSPPH 1462
Query: 155 KRQRRSRGRPSGGARRRRRGAPAAPQQQSEPARPSS 190
KR RRS SG +RR + ++ S + SS
Sbjct: 1463 KRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSS 1498
Score = 34.3 bits (77), Expect = 0.15
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRG 162
+R R R +SP + SS S S R RR SSSS++S + S + R R
Sbjct: 1451 SRSRSRSLSPPHKRWRRSSCSS----SGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSP 1506
Query: 163 RPSGGARRRRR 173
P + RRRR
Sbjct: 1507 SPRRRSDRRRR 1517
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.4 bits (85), Expect = 0.018
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 8/145 (5%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRG 162
+R R PV+ R S RT RRR +S +S +++ SP T+R+ RSR
Sbjct: 1946 SRSRTPPVTRRR-------SRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRT 1998
Query: 163 RPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGP-ALEQGVASRR 221
P R R R +P ++ P+ + L R P A+ + SR
Sbjct: 1999 SPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 2058
Query: 222 PQALARQLDVFGQATAVLRSRDLGS 246
P+ + + A+ R GS
Sbjct: 2059 PRTARGKRSLTRSPPAIRRRSASGS 2083
Score = 34.3 bits (77), Expect = 0.15
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 104 RKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGR 163
R+R R S + S S R+ + RRR S + S Q + + +R+ RSR
Sbjct: 1786 RRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTP 1845
Query: 164 PSGGARRRRRGAPAAPQQQSEPARPSS 190
P+ R R R +PA ++ A P++
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPAT 1872
Score = 34.3 bits (77), Expect = 0.15
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 17/170 (10%)
Query: 61 RARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTS 120
R+RS L+ R + + R R +R + +R R PVS R T
Sbjct: 1875 RSRSRTPLISRRRSRSRTSPVSRR------RSRSRTSVTRRRSRSRASPVSRRRSRSRTP 1928
Query: 121 SSSKRTEGS----CRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAP 176
++R S RRR +S + +++ P T+R+ RSR P R R R +P
Sbjct: 1929 PVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSP 1988
Query: 177 AAPQQQ----SEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRP 222
++ S R S + + R R R+ PA+ + SR P
Sbjct: 1989 VTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS---RTPPAIRRRSRSRTP 2035
Score = 33.5 bits (75), Expect = 0.26
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 100 PHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRR 159
P A+++RR S S +SSSS + S SSSS++S + P K +
Sbjct: 2598 PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQ 2657
Query: 160 SRGRPSGGAR----RRRRGAPAAPQQQSEPARPSSEGKV 194
+ +P+ + RR +P P +R S V
Sbjct: 2658 ALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPV 2696
Score = 33.1 bits (74), Expect = 0.34
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 104 RKRRRPVSPERYSY-GTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRG 162
R R +P+R G+SS K + +RR +S+SS ++ + + + RS+
Sbjct: 710 RGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKA 769
Query: 163 RPSGGARRRRRGAPAAPQQQSE-PARPSSEG 192
+ RR G+ P+Q+S+ P R S G
Sbjct: 770 KSRLSLRRSLSGSSPCPKQKSQTPPRRSRSG 800
Score = 32.7 bits (73), Expect = 0.45
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 104 RKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGR 163
++R R SP+R + S +++R G R R+ S + S + + S R+ RSR R
Sbjct: 529 QRRGRSRSPQRPGWSRSRNTQR-RGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSR 587
Query: 164 PSGGARRRRRGAPAAPQQQSEPAR 187
R R R + PAR
Sbjct: 588 TPARRRSRSRTPTRRRSRSRTPAR 611
Score = 32.7 bits (73), Expect = 0.45
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 104 RKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSS--SSANSQQGQWETGSPPTKRQRRSR 161
R R P S + ++++ S RRR SS + S++G+ + P ++ RSR
Sbjct: 1717 RSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSR 1776
Query: 162 GRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQG--VAS 219
R RRR + Q S R S + R R + Y PA ++ +S
Sbjct: 1777 SRREKTRTTRRRDRSGSSQSTSR-RRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSS 1835
Query: 220 RRPQALAR 227
RR + +R
Sbjct: 1836 RRRRGRSR 1843
Score = 32.0 bits (71), Expect = 0.77
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 108 RPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGG 167
R SPE G+SS+ E + R S +S + + ++ +PP +R RS +
Sbjct: 1645 RGPSPE----GSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRK 1700
Query: 168 AR--RRRRGAPAAPQQQS 183
AR RR R A ++P+ +S
Sbjct: 1701 ARLSRRSRSASSSPETRS 1718
Score = 31.6 bits (70), Expect = 1.0
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 104 RKRRRPVSPERYSYGTSSSSKRTEGSCR---RRRQSSSSANSQQGQWETGSPPTKRQRRS 160
R+R R +P R S + R R RRR S S + G+ + +P + + RS
Sbjct: 601 RRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRS 660
Query: 161 RGRPSGGARRRRRGAPAAPQQQSEPARPSSEGK 193
R G R R PA +S P+ G+
Sbjct: 661 RTPARRGRSRSR--TPARRSGRSRSRTPARRGR 691
Score = 30.8 bits (68), Expect = 1.7
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 104 RKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGR 163
+++++ +R SSS +R ++++ S + S++ + + +P +KR+ + + R
Sbjct: 186 KQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKR 245
Query: 164 -------PSGGARRRRRGAPAAPQQQSEPARPSS 190
P+ +RR R A S+ +R S
Sbjct: 246 KRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRS 279
Score = 30.8 bits (68), Expect = 1.7
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Query: 104 RKRRRPVSPERYSYGTSSSS------KRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQ 157
R+R R SP R S + S + R+ RR R S + + G+ + +P + +
Sbjct: 632 RRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGR 691
Query: 158 RRSRGRPSGGAR-----RRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGPA 212
RSR G +R RR R PQ++ R S + R R P
Sbjct: 692 SRSRTPRRGRSRSRSLVRRGRSHSRTPQRR---GRSGSSSERKNKSRTSQRRSRSNSSPE 748
Query: 213 LEQG-VASRRPQALA 226
+++ ++SRR ++L+
Sbjct: 749 MKKSRISSRRSRSLS 763
Score = 30.8 bits (68), Expect = 1.7
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 15/130 (11%)
Query: 105 KRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRP 164
+ R P+ P + S R+ + RRR +S + ++ + T SPP R+R + G
Sbjct: 2031 RSRTPLLPRK------RSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSS 2084
Query: 165 SGGARRRRRGAPAAPQQQSEPARPS---SEGKVTCDIRLRVR---AEYCEHGPALEQGVA 218
S R R P A + S P + +++C R + + C LE +
Sbjct: 2085 SD---RSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGS 2141
Query: 219 SRRPQALARQ 228
SR P ++ +Q
Sbjct: 2142 SRTPMSVLQQ 2151
Score = 30.4 bits (67), Expect = 2.2
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRG 162
AR+R R +P R + + ++R R + S S + P +R RSR
Sbjct: 590 ARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRS 649
Query: 163 RPSGGARRRRRGAPA--APQQQSEPARPSSEGK 193
R R R PA + PAR S +
Sbjct: 650 RTPARRGRSRSRTPARRGRSRSRTPARRSGRSR 682
Score = 30.4 bits (67), Expect = 2.2
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 113 ERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRR- 171
ER S +SSSS + S SSSS+ S E S P + + + PS +
Sbjct: 2529 ERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKE 2588
Query: 172 --RRGAPAAPQQQSEPARPSS 190
R G P P R SS
Sbjct: 2589 AVREGRPPEPTPAKRKRRSSS 2609
Score = 30.0 bits (66), Expect = 2.9
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSS-SANSQQGQWETGSPPTKRQRRS- 160
A++ R SP+R G S S +R S R Q S ++++G+ + SP T+ + RS
Sbjct: 519 AQRWGRSRSPQRR--GRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSR 576
Query: 161 ----RGRPSGGARRRRRGAPAAP-QQQSEPARPSSEGK 193
RGR RRR P +++S P+ G+
Sbjct: 577 TPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGR 614
Score = 30.0 bits (66), Expect = 2.9
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRG 162
+R+ R P R + S S+R + RRR S S+ S +RR R
Sbjct: 1757 SRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTS------------RRRQRS 1804
Query: 163 RPSGGARRRRRGAPAAPQQQSEPARPSS 190
R RRRRG + PAR S
Sbjct: 1805 RSRSRVTRRRRG--GSGYHSRSPARQES 1830
Score = 29.3 bits (64), Expect = 5.0
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 1/124 (0%)
Query: 105 KRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRP 164
+RRR S S RT S RRR +S + S++ SP ++ RSR P
Sbjct: 1812 RRRRGGSGYHSRSPARQESSRTS-SRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASP 1870
Query: 165 SGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQA 224
+ R R R + ++ P S + + R P + SR P
Sbjct: 1871 ATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPV 1930
Query: 225 LARQ 228
R+
Sbjct: 1931 TRRR 1934
Score = 28.9 bits (63), Expect = 6.5
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 107 RRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSS------ANSQQGQWETGSPPTKRQRRS 160
R P ++ +R+E S RR + SS + S+ + + SP K +R+S
Sbjct: 181 RSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKS 240
Query: 161 RGRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCD 197
+ + R+R R AP+ + S++ + D
Sbjct: 241 KDK----KRKRSRSTTPAPKSRRAHRSTSADSASSSD 273
Score = 28.9 bits (63), Expect = 6.5
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 16/99 (16%)
Query: 108 RPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSP--------------P 153
+P R S +SSSS + S SSSS +S + P P
Sbjct: 2525 QPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTP 2584
Query: 154 TKRQRRSRGRP--SGGARRRRRGAPAAPQQQSEPARPSS 190
++ GRP A+R+RR + ++ S + SS
Sbjct: 2585 APKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSS 2623
>gi|153251865 hypothetical protein LOC84226 [Homo sapiens]
Length = 1984
Score = 37.0 bits (84), Expect = 0.024
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 101 HLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETG--SPPTKRQR 158
H +RR SP S+ S S+R+ S RR S S S +G E SP +R R
Sbjct: 1638 HRGPSQRRHHSPSERSH--RSPSERSHRSSSERRHRSPSQRSHRGPSERSHCSPSERRHR 1695
Query: 159 RSRGRPSGGARRRRRGAPAAPQQQSEPARPS 189
R G RR +P+ +S PAR S
Sbjct: 1696 SPSQRSHRGPSERRHHSPSKRSHRS-PARRS 1725
>gi|7661864 USP6 N-terminal like isoform 1 [Homo sapiens]
Length = 828
Score = 36.6 bits (83), Expect = 0.031
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 25/192 (13%)
Query: 21 YGMLSLHR--MFEVVGGQLTECELELLA--------FLLDEAPGAAGGLARARSGLELLL 70
Y +L LH+ + ++ +L E E LA F++++ + L RA+ L
Sbjct: 301 YTILKLHKKHLMKLSMEELVEFFQETLAKDFFFEDDFVIEQLQISMTELKRAK------L 354
Query: 71 ELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTSSSSKRTEGSC 130
+L G+ DE + LGQL L + HL+ +R P + G +R G+
Sbjct: 355 DLPEPGKEDEYPKKPLGQLPPELQSWGV-HHLSNGQRSVGRPSPLASG-----RRESGAP 408
Query: 131 RRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQSEP---AR 187
RR + S S+ G E PP ++ + +R P+ PQ S A
Sbjct: 409 HRRHEHSPHPQSRTGTPERAQPPRRKSVEEESKKLKDEADFQRKLPSGPQDSSRQYNHAA 468
Query: 188 PSSEGKVTCDIR 199
+ T +IR
Sbjct: 469 ANQNSNATSNIR 480
>gi|122937432 USP6 N-terminal like isoform 2 [Homo sapiens]
Length = 845
Score = 36.6 bits (83), Expect = 0.031
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 25/192 (13%)
Query: 21 YGMLSLHR--MFEVVGGQLTECELELLA--------FLLDEAPGAAGGLARARSGLELLL 70
Y +L LH+ + ++ +L E E LA F++++ + L RA+ L
Sbjct: 318 YTILKLHKKHLMKLSMEELVEFFQETLAKDFFFEDDFVIEQLQISMTELKRAK------L 371
Query: 71 ELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTSSSSKRTEGSC 130
+L G+ DE + LGQL L + HL+ +R P + G +R G+
Sbjct: 372 DLPEPGKEDEYPKKPLGQLPPELQSWGV-HHLSNGQRSVGRPSPLASG-----RRESGAP 425
Query: 131 RRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQSEP---AR 187
RR + S S+ G E PP ++ + +R P+ PQ S A
Sbjct: 426 HRRHEHSPHPQSRTGTPERAQPPRRKSVEEESKKLKDEADFQRKLPSGPQDSSRQYNHAA 485
Query: 188 PSSEGKVTCDIR 199
+ T +IR
Sbjct: 486 ANQNSNATSNIR 497
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 36.6 bits (83), Expect = 0.031
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 122 SSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARR-----RRRGAP 176
S KRT S R R+ SS + S + Q + S +R+R SR R RR +R+ +P
Sbjct: 1836 SRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSP 1895
Query: 177 AAPQQQSEPARPSSEGKVTCDIRLRVRA 204
+ E R S + D R VRA
Sbjct: 1896 KHRSKSRERKRKRSSSR---DNRKTVRA 1920
Score = 30.4 bits (67), Expect = 2.2
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 107 RRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRR---SRGR 163
RR VS E+ SK E R+R+ SSS ++++ P++R R SR R
Sbjct: 1883 RRSVSKEKRKRSPKHRSKSRE----RKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRR 1938
Query: 164 PSGGARRRRRGAPAAPQQQSEPARPS 189
S RRR + + ++ P+R S
Sbjct: 1939 RSRSVGRRRSFSISPSRRSRTPSRRS 1964
Score = 30.0 bits (66), Expect = 2.9
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 121 SSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGA 175
S SKR++ S + R+ +S + S+ + + S + Q RSR R +RRRRR +
Sbjct: 1824 SRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSR----SRRRRRSS 1874
Score = 29.6 bits (65), Expect = 3.8
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 16/144 (11%)
Query: 101 HLARKRR---RPVSPERYSYGTSSSSK-RTEGSCRRRRQSSSSANSQQGQWETGSPPTKR 156
H +RKR R + +R S S S+ R+ RRRR+SS S + +G+ KR
Sbjct: 1834 HKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKR 1893
Query: 157 ------------QRRSRGRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRA 204
++RS R + R R P+ + P+R V +
Sbjct: 1894 SPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISP 1953
Query: 205 EYCEHGPALEQGVASRRPQALARQ 228
P+ SRR + +R+
Sbjct: 1954 SRRSRTPSRRSRTPSRRSRTPSRR 1977
Score = 28.5 bits (62), Expect = 8.5
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 101 HLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRS 160
H +RRR S R + S S+R+ RR R S + + + T P++R R
Sbjct: 1932 HTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRT---PSRRSRTP 1988
Query: 161 RGRPSGGARRRR 172
R +RRRR
Sbjct: 1989 SRRSRTPSRRRR 2000
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 36.6 bits (83), Expect = 0.031
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 122 SSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARR-----RRRGAP 176
S KRT S R R+ SS + S + Q + S +R+R SR R RR +R+ +P
Sbjct: 1836 SRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSP 1895
Query: 177 AAPQQQSEPARPSSEGKVTCDIRLRVRA 204
+ E R S + D R VRA
Sbjct: 1896 KHRSKSRERKRKRSSSR---DNRKTVRA 1920
Score = 30.4 bits (67), Expect = 2.2
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 107 RRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRR---SRGR 163
RR VS E+ SK E R+R+ SSS ++++ P++R R SR R
Sbjct: 1883 RRSVSKEKRKRSPKHRSKSRE----RKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRR 1938
Query: 164 PSGGARRRRRGAPAAPQQQSEPARPS 189
S RRR + + ++ P+R S
Sbjct: 1939 RSRSVGRRRSFSISPSRRSRTPSRRS 1964
Score = 30.0 bits (66), Expect = 2.9
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 121 SSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGA 175
S SKR++ S + R+ +S + S+ + + S + Q RSR R +RRRRR +
Sbjct: 1824 SRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSR----SRRRRRSS 1874
Score = 29.6 bits (65), Expect = 3.8
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 16/144 (11%)
Query: 101 HLARKRR---RPVSPERYSYGTSSSSK-RTEGSCRRRRQSSSSANSQQGQWETGSPPTKR 156
H +RKR R + +R S S S+ R+ RRRR+SS S + +G+ KR
Sbjct: 1834 HKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKR 1893
Query: 157 ------------QRRSRGRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRA 204
++RS R + R R P+ + P+R V +
Sbjct: 1894 SPKHRSKSRERKRKRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISP 1953
Query: 205 EYCEHGPALEQGVASRRPQALARQ 228
P+ SRR + +R+
Sbjct: 1954 SRRSRTPSRRSRTPSRRSRTPSRR 1977
Score = 28.5 bits (62), Expect = 8.5
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 101 HLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRS 160
H +RRR S R + S S+R+ RR R S + + + T P++R R
Sbjct: 1932 HTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRT---PSRRSRTP 1988
Query: 161 RGRPSGGARRRR 172
R +RRRR
Sbjct: 1989 SRRSRTPSRRRR 2000
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 36.6 bits (83), Expect = 0.031
Identities = 57/191 (29%), Positives = 74/191 (38%), Gaps = 27/191 (14%)
Query: 59 LARARSGLELLLELERRGQ-----CDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPE 113
L + SGL L L+R Q DE RL G R +L LA +R +PE
Sbjct: 861 LEQVESGLHRALRLQRFFQQAHEWVDEGFARLAGA---GPGREAVLAALALRR----APE 913
Query: 114 RYSYGT------------SSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSR 161
S GT S ++ R G C+ R Q QQ E SP R+RR+
Sbjct: 914 P-SAGTFQEMRALALDLGSPAALREWGRCQARCQELER-RIQQHVGEEASPRGYRRRRAD 971
Query: 162 GRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRR 221
G SGGA+ R + P+ P + +Y E GP L R
Sbjct: 972 GASSGGAQWGPRSPSPSLSSLLLPSSPGPRPAPSHCSLAPCGEDYEEEGPELAPEAEGRP 1031
Query: 222 PQA-LARQLDV 231
P+A L R L+V
Sbjct: 1032 PRAVLIRGLEV 1042
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 36.6 bits (83), Expect = 0.031
Identities = 37/139 (26%), Positives = 51/139 (36%), Gaps = 8/139 (5%)
Query: 55 AAGGLARARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPER 114
A GL + G E E G+ S G+ R + KR+ E
Sbjct: 638 ACSGLNKQEPGGSHGSETEDTGRSLPSKKERSGKSHRHKKKKKHKKSSKHKRKHKADTEE 697
Query: 115 YSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRG 174
S S K + R+R+++ SSA + + PP G S RRRR
Sbjct: 698 KSSKAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPP--------GSGSPAPPRRRRR 749
Query: 175 APAAPQQQSEPARPSSEGK 193
A Q++S PA S GK
Sbjct: 750 AQDDSQRRSLPAEEGSSGK 768
Score = 30.4 bits (67), Expect = 2.2
Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
Query: 124 KRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQS 183
K+ + S + +R+ + + + E+G KR++R R ++ + APA ++
Sbjct: 679 KKHKKSSKHKRKHKADTEEKSSKAESGEKSKKRKKRKR-------KKNKSSAPADSERGP 731
Query: 184 EPARPSSEGKVTCDIRLRVRAEYCEHGPALEQGVASRRPQ 223
+P P S R R + + E+G + ++ +
Sbjct: 732 KPEPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGSSGKKDE 771
Score = 28.9 bits (63), Expect = 6.5
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 103 ARKRRRPVSPERY-SYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSR 161
+R R R + ER S G S SS SC R R S ++ W+ ++ + RS
Sbjct: 942 SRSRSRSHTRERSRSRGRSRSS-----SCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRST 996
Query: 162 GRPS--GGARRRRRGAPAAPQQQS 183
PS G+R+R G + ++ S
Sbjct: 997 RSPSQRSGSRKRSWGHESPEERHS 1020
>gi|239757603 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 36.2 bits (82), Expect = 0.041
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 109 PVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSR----GR- 163
P P + S+ S+R G R + S+S + Q GS RQR +R GR
Sbjct: 8 PTKPRTVAIKPSAFSRRNPG---REKDGSASLEGARRQRRVGS----RQRYARPGRAGRE 60
Query: 164 PSGGARRRRRGAPAAPQQQ 182
P G RRRR GAP P Q
Sbjct: 61 PKGAGRRRRPGAPRGPFTQ 79
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 36.2 bits (82), Expect = 0.041
Identities = 54/188 (28%), Positives = 77/188 (40%), Gaps = 18/188 (9%)
Query: 45 LAFLLDEAPGAAGGLARARSGLELLLELERRG---QCDESNLRLLGQLLRVLARHDLLPH 101
LA L+ EAPG + R +GL E ERR QC R++ + R L L P
Sbjct: 132 LADLVREAPGRS---MRVATGLYEAYEAERRAKLQQCRAERDRIMREEKRRLFT-PLSPA 187
Query: 102 LARKRRRPVSPERYSYGT-SSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRS 160
A +P S + SS+S + R R++S S +S + Q PP +
Sbjct: 188 AAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQ----PPPAGSRTGR 243
Query: 161 RGRPSGGARRRRRGAPAAPQQQSEPARPSSEGKVTCDIRLRVRA---EYCEHGPALEQGV 217
+ RRR GA ++ +S + S G+ ++R RA C G A
Sbjct: 244 KSHSLDSLSRRREGALSS---ESGASSSSYSGESLRELRWPPRASARNSCPAGSASSTTN 300
Query: 218 ASRRPQAL 225
A RP AL
Sbjct: 301 APGRPSAL 308
>gi|239752105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 36.2 bits (82), Expect = 0.041
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 109 PVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSR----GR- 163
P P + S+ S+R G R + S+S + Q GS RQR +R GR
Sbjct: 8 PTKPRTVAIKPSAFSRRNPG---REKDGSASLEGARRQRRVGS----RQRYARPGRAGRE 60
Query: 164 PSGGARRRRRGAPAAPQQQ 182
P G RRRR GAP P Q
Sbjct: 61 PKGAGRRRRPGAPRGPFTQ 79
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 36.2 bits (82), Expect = 0.041
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 64 SGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRPVSPERYSYGTSSSS 123
SG E++ E+E + + D ++ +R+L+ +L+P K+ +R+ +SSSS
Sbjct: 146 SGQEVVREIENQ-KTDAASKPFAE--VRILSCGELIPKSKVKKEEK---KRHKSSSSSSS 199
Query: 124 KRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQS 183
++ QSSS ++ + E S K++ R R +++R+ + + +S
Sbjct: 200 SSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKSKKSASSES 259
Query: 184 E 184
E
Sbjct: 260 E 260
>gi|57242766 hypothetical protein LOC168455 [Homo sapiens]
Length = 235
Score = 36.2 bits (82), Expect = 0.041
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 152 PPTKRQRRSRGRPSGGARRRRRGAPAAPQQQSEPARP 188
PPT R + R P ARRRRRGA AA ++ +P P
Sbjct: 114 PPTARGQARRPVPRAAARRRRRGARAAAARRRKPRPP 150
Score = 35.4 bits (80), Expect = 0.069
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 19/101 (18%)
Query: 95 RHDLLPHLARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPT 154
+H PH+ R S + Y Y SCR + +GQ P
Sbjct: 85 KHQFSPHILR------SKDVYGYS----------SCRALVPDPPGPPTARGQARRPVPRA 128
Query: 155 KRQRRSRGRPSGGARRRR---RGAPAAPQQQSEPARPSSEG 192
+RR RG + ARRR+ P P ++S PA+P + G
Sbjct: 129 AARRRRRGARAAAARRRKPRPPPPPPPPPEESCPAKPVAPG 169
>gi|169168296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 35.8 bits (81), Expect = 0.053
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQ---RR 159
AR+ R+P+ P +S T+ + + C R +SA QG + P + Q +
Sbjct: 203 ARRFRKPLLPPGWSPRTTDPGQEVQADCGGGR--LASAQLPQGLPRSAGLPAREQPPPTQ 260
Query: 160 SRGRPSGGARRRRRGAPAAPQQQSEPARPS--SEGKVTCDIRLRVRAEYCEHGPALEQ 215
SRGR R +PA + P RP + + +C L V E GP L +
Sbjct: 261 SRGRLQSPCAREASTSPALTPRSQYPKRPQGPARNRGSCSPPLSVTLAVTE-GPRLRK 317
>gi|169168044 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 35.8 bits (81), Expect = 0.053
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQ---RR 159
AR+ R+P+ P +S T+ + + C R +SA QG + P + Q +
Sbjct: 203 ARRFRKPLLPPGWSPRTTDPGQEVQADCGGGR--LASAQLPQGLPRSAGLPAREQPPPTQ 260
Query: 160 SRGRPSGGARRRRRGAPAAPQQQSEPARPS--SEGKVTCDIRLRVRAEYCEHGPALEQ 215
SRGR R +PA + P RP + + +C L V E GP L +
Sbjct: 261 SRGRLQSPCAREASTSPALTPRSQYPKRPQGPARNRGSCSPPLSVTLAVTE-GPRLRK 317
>gi|169167512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 442
Score = 35.8 bits (81), Expect = 0.053
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 103 ARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQ---RR 159
AR+ R+P+ P +S T+ + + C R +SA QG + P + Q +
Sbjct: 286 ARRFRKPLLPPGWSPRTTDPGQEVQADCGGGR--LASAQLPQGLPRSAGLPAREQPPPTQ 343
Query: 160 SRGRPSGGARRRRRGAPAAPQQQSEPARPS--SEGKVTCDIRLRVRAEYCEHGPALEQ 215
SRGR R +PA + P RP + + +C L V E GP L +
Sbjct: 344 SRGRLQSPCAREASTSPALTPRSQYPKRPQGPARNRGSCSPPLSVTLAVTE-GPRLRK 400
>gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [Homo
sapiens]
Length = 1447
Score = 35.8 bits (81), Expect = 0.053
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 33/118 (27%)
Query: 105 KRRRPVSPERYSYGTSSSSK-----RTEGSCRRRRQSSSSANSQQGQW------------ 147
+++ PV+ + G +K + +GS R R++ +++ S + QW
Sbjct: 1217 RKKTPVTEQEEKLGMDDLTKLVQEQKPKGSQRSRKRGHTASESDEQQWPEEKRLKEDILE 1276
Query: 148 ---ETGSPPTKRQRRSRGRPSGGAR-------------RRRRGAPAAPQQQSEPARPS 189
E SPP K +R +P GG +++ P AP+++ E R S
Sbjct: 1277 NEDEQNSPPKKGKRGRPPKPLGGGTPKEEPTMKTSKKGSKKKSGPPAPEEEEEEERQS 1334
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 35.8 bits (81), Expect = 0.053
Identities = 40/140 (28%), Positives = 57/140 (40%), Gaps = 26/140 (18%)
Query: 102 LARKRRRPVSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSR 161
L R+RRR R S G + R + S R+R A+ G P+ R
Sbjct: 257 LRRRRRRGAGQPRTSPGGADGGPRRQNSVRQR---PPDASPSPGSARPAREPS--LERVG 311
Query: 162 GRPSGGARRRRRGA-----PAAPQQQSEPARPS-----SEGKVTCDIRLRVRAEYCEHGP 211
G P+ A R A AAP+ + PA PS +EG++ V+A+Y
Sbjct: 312 GHPTSPAALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRL-------VKAQYIPGAQ 364
Query: 212 ALEQGV----ASRRPQALAR 227
A +G+ A R+P L R
Sbjct: 365 AATRGLPGRAARRKPPPLTR 384
Score = 30.4 bits (67), Expect = 2.2
Identities = 36/134 (26%), Positives = 52/134 (38%), Gaps = 4/134 (2%)
Query: 51 EAPGAAGGLAR-ARSGLELLLELERRGQCDESNLRLLGQLLRVLARHDLLPHLARKRRRP 109
E P AAG R A + R+ +S LLG+ V + P R+ RP
Sbjct: 395 ERPRAAGRRGRMAEASGRRGSPRARKASRSQSETSLLGRASAVPSGPPKYPTAEREEPRP 454
Query: 110 VSPERYSYGTSSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGAR 169
P R T ++ + GSCRR R S++ ++ G+ P R PS R
Sbjct: 455 PRPRRGPAPTLAA--QAAGSCRRWR-STAEIDAADGRRVRPRAPAARVPGPGPSPSAPQR 511
Query: 170 RRRRGAPAAPQQQS 183
R G + + S
Sbjct: 512 RLLYGCAGSDSECS 525
>gi|4758216 dishevelled 2 [Homo sapiens]
Length = 736
Score = 35.4 bits (80), Expect = 0.069
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 115 YSYGT-SSSSKRTEGSCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRR 173
Y+YG S+SS+ +EGS S + G+ E +P +K S PS RR
Sbjct: 574 YTYGGGSASSQHSEGSRSSGSTRSDGGAGRTGRPEERAPESKSGSGSESEPSSRGGSLRR 633
Query: 174 GAPAAPQQQSEPARPSSEGKVTCDIRLRVRAEYCEHGP 211
G A+ P P S G LR +GP
Sbjct: 634 GGEASGTSDGGP--PPSRGSTGGAPNLRAHPGLHPYGP 669
>gi|239753154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 79
Score = 35.4 bits (80), Expect = 0.069
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 129 SCRRRRQSSSSANSQQGQWETGSPPTKRQRRSRGRPSGGARRRRRGAPAAPQQQSEPARP 188
S RRR S+S + + GS P+ +RR P A RR RGAP A QQ+++ +
Sbjct: 5 SPERRRPSASLSRA------AGSAPSAARRRRSREPGVMALRRARGAPGAGQQRAQQRQL 58
Query: 189 S--SEGKVTCDIRLRV 202
S S TC +R+ +
Sbjct: 59 SLRSIQLSTCLMRMEM 74
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,258,964
Number of Sequences: 37866
Number of extensions: 627412
Number of successful extensions: 5401
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 232
Number of HSP's that attempted gapping in prelim test: 4450
Number of HSP's gapped (non-prelim): 906
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.