Guide to the Human Genome
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Name: DEDD Sequence: fasta or formatted (318aa) NCBI GI: 89353287
Description:

death effector domain-containing protein

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Other entries for this name:
alt mRNA [318aa] death effector domain-containing protein
alt mRNA [318aa] death effector domain-containing protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         15           1
 C cysteine            2.5          8           2
 D aspartate           6.6         21           2
 E glutamate           6.6         21           2
 F phenylalanine       3.5         11           1
 G glycine             5.0         16           1
 H histidine           3.1         10           1
 I isoleucine          4.4         14           2
 K lysine              5.0         16           1
 L leucine            12.3         39           2
 M methionine          1.3          4           1
 N asparagine          2.8          9           1
 P proline             6.0         19           2
 Q glutamine           5.3         17           1
 R arginine           10.7         34           3
 S serine              5.3         17           1
 T threonine           4.7         15           1
 V valine              6.6         21           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   death effector domain-containing protein 
DEDD                  1.000   death effector domain-containing protein 
DEDD                  1.000   death effector domain-containing protein 
DEDD2                 0.361   death effector domain-containing  DNA binding protei...
ADRB3                 0.019   adrenergic, beta-3-, receptor 
ZFHX2                 0.016   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.016   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.016   PREDICTED: zinc finger homeobox 2 
BRD4                  0.013   bromodomain-containing protein 4 isoform short 
BRD4                  0.013   bromodomain-containing protein 4 isoform long 
CHRNA4                0.011   cholinergic receptor, nicotinic, alpha 4 subunit prec...
ATF5                  0.011   activating transcription factor 5 
FEZF1                 0.011   FEZ family zinc finger 1 isoform 2 
FEZF1                 0.011   FEZ family zinc finger 1 isoform 1 
CCDC6                 0.011   coiled-coil domain containing 6 
SRRM2                 0.011   splicing coactivator subunit SRm300 
CASP8                 0.011   caspase 8 isoform G precursor 
MLL                   0.011   myeloid/lymphoid or mixed-lineage leukemia protein [...
CASP8                 0.011   caspase 8 isoform C precursor 
CASP8                 0.011   caspase 8 isoform E 
CASP8                 0.011   caspase 8 isoform C precursor 
CASP8                 0.011   caspase 8 isoform B precursor 
CASP8                 0.011   caspase 8 isoform A precursor 
MMP9                  0.011   matrix metalloproteinase 9 preproprotein 
GSC2                  0.011   goosecoid homeobox 2 
CDC2L5                0.010   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.010   cell division cycle 2-like 5 isoform 2 
BAHCC1                0.010   BAH domain and coiled-coil containing 1 
SHANK1                0.010   SH3 and multiple ankyrin repeat domains 1 
NKX2-8                0.010   NK2 homeobox 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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