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Search of human proteins with 19743854
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|19743854 decorin isoform e precursor [Homo sapiens]
(75 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19743854 decorin isoform e precursor [Homo sapiens] 161 9e-41
gi|19743850 decorin isoform c precursor [Homo sapiens] 155 9e-39
gi|19743846 decorin isoform a preproprotein [Homo sapiens] 152 6e-38
gi|4503271 decorin isoform a preproprotein [Homo sapiens] 152 6e-38
gi|19743852 decorin isoform d precursor [Homo sapiens] 152 6e-38
gi|19743848 decorin isoform b precursor [Homo sapiens] 150 3e-37
gi|4502403 biglycan preproprotein [Homo sapiens] 64 3e-11
gi|41350214 asporin [Homo sapiens] 44 3e-05
gi|38454322 adhesion molecule with Ig-like domain 3 [Homo sapiens] 31 0.19
gi|188528675 slit homolog 1 [Homo sapiens] 30 0.42
gi|122937343 platelet endothelial aggregation receptor 1 [Homo s... 29 0.94
gi|11321571 slit homolog 3 [Homo sapiens] 28 2.1
gi|84781739 leucine-rich repeats and transmembrane domains 2 [Ho... 28 2.1
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 27 3.6
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 27 3.6
gi|7662102 leucine rich repeat transmembrane neuronal 2 [Homo sa... 27 4.6
gi|30089980 chordin [Homo sapiens] 26 6.1
gi|4759146 slit homolog 2 [Homo sapiens] 26 6.1
gi|110611908 mitogen-activated protein kinase kinase kinase kina... 26 6.1
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 26 6.1
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ... 26 6.1
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 26 6.1
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 26 6.1
gi|45545424 LISCH protein isoform 2 [Homo sapiens] 26 7.9
gi|45505163 LISCH protein isoform 1 [Homo sapiens] 26 7.9
gi|40786420 immunoglobulin-like domain containing receptor 2 [Ho... 26 7.9
gi|52353306 leucine rich repeat containing 55 [Homo sapiens] 26 7.9
>gi|19743854 decorin isoform e precursor [Homo sapiens]
Length = 75
Score = 161 bits (408), Expect = 9e-41
Identities = 75/75 (100%), Positives = 75/75 (100%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLGCLPS 75
HLRVVQCSDLGCLPS
Sbjct: 61 HLRVVQCSDLGCLPS 75
>gi|19743850 decorin isoform c precursor [Homo sapiens]
Length = 212
Score = 155 bits (391), Expect = 9e-39
Identities = 73/75 (97%), Positives = 73/75 (97%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLGCLPS 75
HLRVVQCSDLG PS
Sbjct: 61 HLRVVQCSDLGLPPS 75
>gi|19743846 decorin isoform a preproprotein [Homo sapiens]
Length = 359
Score = 152 bits (384), Expect = 6e-38
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLG 71
HLRVVQCSDLG
Sbjct: 61 HLRVVQCSDLG 71
>gi|4503271 decorin isoform a preproprotein [Homo sapiens]
Length = 359
Score = 152 bits (384), Expect = 6e-38
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLG 71
HLRVVQCSDLG
Sbjct: 61 HLRVVQCSDLG 71
>gi|19743852 decorin isoform d precursor [Homo sapiens]
Length = 172
Score = 152 bits (384), Expect = 6e-38
Identities = 71/71 (100%), Positives = 71/71 (100%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDLG 71
HLRVVQCSDLG
Sbjct: 61 HLRVVQCSDLG 71
>gi|19743848 decorin isoform b precursor [Homo sapiens]
Length = 250
Score = 150 bits (378), Expect = 3e-37
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC
Sbjct: 1 MKATIILLLLAQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQC 60
Query: 61 HLRVVQCSDL 70
HLRVVQCSDL
Sbjct: 61 HLRVVQCSDL 70
>gi|4502403 biglycan preproprotein [Homo sapiens]
Length = 368
Score = 63.9 bits (154), Expect = 3e-11
Identities = 36/74 (48%), Positives = 43/74 (58%), Gaps = 9/74 (12%)
Query: 7 LLLLAQVSWAGPFQQRGLFDFMLED--------EASGIGPE-VPDDRDFEPSLGPVCPFR 57
L+ L +S A PF+QRG +DF L+D EASG V D P+ +CPF
Sbjct: 7 LVSLLALSQALPFEQRGFWDFTLDDGPFMMNDEEASGADTSGVLDPDSVTPTYSAMCPFG 66
Query: 58 CQCHLRVVQCSDLG 71
C CHLRVVQCSDLG
Sbjct: 67 CHCHLRVVQCSDLG 80
>gi|41350214 asporin [Homo sapiens]
Length = 380
Score = 43.9 bits (102), Expect = 3e-05
Identities = 34/93 (36%), Positives = 41/93 (44%), Gaps = 23/93 (24%)
Query: 1 MKATIILLLLAQVSWAGPF---QQRGLFDFMLEDEASGIGPEVPDDRD------------ 45
MK ++LL LA S A PF L + ML+D + DD D
Sbjct: 1 MKEYVLLLFLALCS-AKPFFSPSHIALKNMMLKDMEDTDDDDDDDDDDDDDDEDNSLFPT 59
Query: 46 -------FEPSLGPVCPFRCQCHLRVVQCSDLG 71
F L P+CPF CQC+ RVV CSDLG
Sbjct: 60 REPRSHFFPFDLFPMCPFGCQCYSRVVHCSDLG 92
>gi|38454322 adhesion molecule with Ig-like domain 3 [Homo
sapiens]
Length = 504
Score = 31.2 bits (69), Expect = 0.19
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 36 IGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDLG 71
+G PD F P CP++C C ++ C+ LG
Sbjct: 16 VGLGTPDSEGFPPRALHNCPYKCICAADLLSCTGLG 51
>gi|188528675 slit homolog 1 [Homo sapiens]
Length = 1534
Score = 30.0 bits (66), Expect = 0.42
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 53 VCPFRCQCHLRVVQCSDL 70
VCP +C+C VV+CS L
Sbjct: 512 VCPHKCRCEANVVECSSL 529
>gi|122937343 platelet endothelial aggregation receptor 1 [Homo
sapiens]
Length = 1037
Score = 28.9 bits (63), Expect = 0.94
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 51 GPVCPFRCQCH 61
GP C FRCQCH
Sbjct: 184 GPACQFRCQCH 194
>gi|11321571 slit homolog 3 [Homo sapiens]
Length = 1523
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 50 LGPVCPFRCQCHLRVVQCSDLG 71
L P CP +C C VV+CS+ G
Sbjct: 721 LSPRCPEQCTCMETVVRCSNKG 742
>gi|84781739 leucine-rich repeats and transmembrane domains 2
[Homo sapiens]
Length = 370
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 52 PVCPFRCQCHLR--VVQCSDLG 71
P CPF C+C R V CS LG
Sbjct: 37 PTCPFSCKCDSRSLEVDCSGLG 58
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 32 EASGIGPEVPD-DRDFEPSLGPVCPFRCQCHLRVVQCSDLGC 72
E G PE PD D + G P C C + C +GC
Sbjct: 2 EGDGSDPEPPDAGEDSKSENGENAPIYCICRKPDINCFMIGC 43
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 26.9 bits (58), Expect = 3.6
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 32 EASGIGPEVPD-DRDFEPSLGPVCPFRCQCHLRVVQCSDLGC 72
E G PE PD D + G P C C + C +GC
Sbjct: 2 EGDGSDPEPPDAGEDSKSENGENAPIYCICRKPDINCFMIGC 43
>gi|7662102 leucine rich repeat transmembrane neuronal 2 [Homo
sapiens]
Length = 516
Score = 26.6 bits (57), Expect = 4.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 48 PSLGPVCPFRCQCHLRVVQCSDLG 71
P+LG CP +C+C + C G
Sbjct: 28 PALGMACPPKCRCEKLLFYCDSQG 51
>gi|30089980 chordin [Homo sapiens]
Length = 955
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 37 GPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCSDLGCLP 74
G + P + P+ P+C C C R V C + C P
Sbjct: 709 GQQRPHGARWAPNYDPLCSL-CTCQRRTVICDPVVCPP 745
>gi|4759146 slit homolog 2 [Homo sapiens]
Length = 1529
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 42 DDRDFEPSLGPV--CPFRCQCHLRVVQCSDLG 71
DD + + S P+ CP C C VV+CS+ G
Sbjct: 713 DDGNDDNSCSPLSRCPTECTCLDTVVRCSNKG 744
>gi|110611908 mitogen-activated protein kinase kinase kinase kinase
1 isoform 1 [Homo sapiens]
Length = 821
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 18 PFQQRGLF-DFMLEDEASGIGPEVPDDRDFEPSLGPVCPFR 57
P RGL D + + + G GP + D D EP L P P R
Sbjct: 277 PGLNRGLILDLLDKLKNPGKGPSIGDIEDEEPELPPAIPRR 317
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 26.2 bits (56), Expect = 6.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 18 PFQQRGLF-DFMLEDEASGIGPEVPDDRDFEPSLGPVCPFR 57
P RGL D + + + G GP + D D EP L P P R
Sbjct: 277 PGLNRGLILDLLDKLKNPGKGPSIGDIEDEEPELPPAIPRR 317
>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
[Homo sapiens]
Length = 510
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 26 DFMLEDEASGIGPEVPDDRDFEPSLGP 52
D +E E +GPE+PD D EP P
Sbjct: 394 DATVEPETEVVGPELPD--DLEPQAAP 418
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 20 QQRGLFDFMLEDEASGIGPEVP---DDRDFEPSLGPVCPFRCQCHLRVVQ 66
+ RG F ++ G P+ P D+ DF+ +L + + C H +V +
Sbjct: 77 ENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVAR 126
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 20 QQRGLFDFMLEDEASGIGPEVP---DDRDFEPSLGPVCPFRCQCHLRVVQ 66
+ RG F ++ G P+ P D+ DF+ +L + + C H +V +
Sbjct: 177 ENRGRGYFEHREDRRGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFKVAR 226
>gi|45545424 LISCH protein isoform 2 [Homo sapiens]
Length = 649
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 54 CPFRCQCHLRVVQCSDLGCLP 74
CP C C++R C D C P
Sbjct: 285 CPHTCCCYVRCPCCPDKCCCP 305
>gi|45505163 LISCH protein isoform 1 [Homo sapiens]
Length = 630
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 54 CPFRCQCHLRVVQCSDLGCLP 74
CP C C++R C D C P
Sbjct: 266 CPHTCCCYVRCPCCPDKCCCP 286
>gi|40786420 immunoglobulin-like domain containing receptor 2 [Homo
sapiens]
Length = 639
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 54 CPFRCQCHLRVVQCSDLGCLP 74
CP C C++R C D C P
Sbjct: 212 CPHSCCCYVRCPCCPDSCCCP 232
>gi|52353306 leucine rich repeat containing 55 [Homo sapiens]
Length = 341
Score = 25.8 bits (55), Expect = 7.9
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 11 AQVSWAGPFQQRGLFDFMLEDEASGIGPEVPDDRDFEPSLGPVCPFRCQCHLRVVQCS 68
AQ+ W GP L +L A+G+ G CP C C +VV CS
Sbjct: 49 AQLPWPGPPHPAMLLISLLL--AAGL---------MHSDAGTSCPVLCTCRNQVVDCS 95
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.145 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,291,133
Number of Sequences: 37866
Number of extensions: 130958
Number of successful extensions: 458
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 40
length of query: 75
length of database: 18,247,518
effective HSP length: 47
effective length of query: 28
effective length of database: 16,467,816
effective search space: 461098848
effective search space used: 461098848
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.