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Search of human proteins with 197313700
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|197313700 torsin family 2, member A isoform c [Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197313700 torsin family 2, member A isoform c [Homo sapiens] 507 e-144
gi|145386549 torsin family 2, member A isoform b [Homo sapiens] 419 e-117
gi|145386578 torsin family 2, member A isoform a [Homo sapiens] 412 e-115
gi|4557541 torsin A [Homo sapiens] 169 3e-42
gi|14149653 torsin family 1, member B (torsin B) [Homo sapiens] 159 2e-39
gi|115647957 torsin family 3, member A [Homo sapiens] 126 1e-29
gi|197313702 torsin family 2, member A isoform d [Homo sapiens] 108 3e-24
gi|116063568 hypothetical protein LOC54863 [Homo sapiens] 53 2e-07
gi|32483397 dopamine receptor D4 [Homo sapiens] 37 0.020
gi|22749325 zinc finger protein 48 [Homo sapiens] 33 0.17
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 33 0.22
gi|84993742 tripartite motif-containing 71 [Homo sapiens] 33 0.22
gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens] 32 0.50
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 32 0.50
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 32 0.50
gi|104526627 triadin [Homo sapiens] 32 0.50
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 32 0.65
gi|70166645 pseudouridine synthase 1 isoform 1 [Homo sapiens] 31 0.85
gi|13540606 caseinolytic peptidase B [Homo sapiens] 31 0.85
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 31 0.85
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 31 0.85
gi|169214023 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|169214468 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 31 1.1
gi|145309320 forkhead box Q1 [Homo sapiens] 30 1.4
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 30 1.4
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 30 1.4
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 30 1.4
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 30 1.4
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 30 1.4
>gi|197313700 torsin family 2, member A isoform c [Homo sapiens]
Length = 242
Score = 507 bits (1306), Expect = e-144
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHL 60
MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHL
Sbjct: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHL 60
Query: 61 AGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRV 120
AGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRV
Sbjct: 61 AGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRV 120
Query: 121 HHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGS 180
HHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGS
Sbjct: 121 HHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGS 180
Query: 181 SWVVYGTNYRKAIFIFIRWLLKLGHHGRAPPRRSGALPPAPAAPRPALRAQRAGPAGPGA 240
SWVVYGTNYRKAIFIFIRWLLKLGHHGRAPPRRSGALPPAPAAPRPALRAQRAGPAGPGA
Sbjct: 181 SWVVYGTNYRKAIFIFIRWLLKLGHHGRAPPRRSGALPPAPAAPRPALRAQRAGPAGPGA 240
Query: 241 KG 242
KG
Sbjct: 241 KG 242
>gi|145386549 torsin family 2, member A isoform b [Homo sapiens]
Length = 253
Score = 419 bits (1076), Expect = e-117
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHL 60
MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHL
Sbjct: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHL 60
Query: 61 AGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRV 120
AGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRV
Sbjct: 61 AGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRV 120
Query: 121 HHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGS 180
HHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGS
Sbjct: 121 HHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGS 180
Query: 181 SWVVYGTNYRKAIFIFIRW 199
SWVVYGTNYRKAIFIFIRW
Sbjct: 181 SWVVYGTNYRKAIFIFIRW 199
>gi|145386578 torsin family 2, member A isoform a [Homo sapiens]
Length = 321
Score = 412 bits (1060), Expect = e-115
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHL 60
MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHL
Sbjct: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHL 60
Query: 61 AGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRV 120
AGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRV
Sbjct: 61 AGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRV 120
Query: 121 HHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGS 180
HHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGS
Sbjct: 121 HHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGS 180
Query: 181 SWVVYGTNYRKAIFIFI 197
SWVVYGTNYRKAIFIFI
Sbjct: 181 SWVVYGTNYRKAIFIFI 197
>gi|4557541 torsin A [Homo sapiens]
Length = 332
Score = 169 bits (427), Expect = 3e-42
Identities = 76/146 (52%), Positives = 108/146 (73%)
Query: 52 LECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLF 111
L+ DL +L GQHLAK +++ A+ F+ +P P KPL LSLHGWTGTGK++VS ++A ++
Sbjct: 61 LQKDLDDNLFGQHLAKKIILNAVFGFINNPKPKKPLTLSLHGWTGTGKNFVSKIIAENIY 120
Query: 112 QGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLM 171
+GGL S VH F LHFPH S+I YK L+ W++GN++AC RS+F+FDEMDKM GL+
Sbjct: 121 EGGLNSDYVHLFVATLHFPHASNITLYKDQLQLWIRGNVSACARSIFIFDEMDKMHAGLI 180
Query: 172 EVLRPFLGSSWVVYGTNYRKAIFIFI 197
+ ++PFL +V G +Y+KA+FIF+
Sbjct: 181 DAIKPFLDYYDLVDGVSYQKAMFIFL 206
>gi|14149653 torsin family 1, member B (torsin B) [Homo sapiens]
Length = 336
Score = 159 bits (402), Expect = 2e-39
Identities = 78/180 (43%), Positives = 109/180 (60%)
Query: 18 LGLVSAAAAAWDLASLRCTLGAFCECDFRPDLPGLECDLAQHLAGQHLAKALVVKALKAF 77
+G SA + C C + + L+ DL + L GQHLA ++ KAL F
Sbjct: 34 IGAASAITGYLSYNDIYCRFAECCREERPLNASALKLDLEEKLFGQHLATEVIFKALTGF 93
Query: 78 VRDPAPTKPLVLSLHGWTGTGKSYVSSLLAHYLFQGGLRSPRVHHFSPVLHFPHPSHIER 137
+ P KPL LSLHGW GTGK++VS ++A L GL+S VH F LHFPH I+
Sbjct: 94 RNNKNPKKPLTLSLHGWAGTGKNFVSQIVAENLHPKGLKSNFVHLFVSTLHFPHEQKIKL 153
Query: 138 YKKDLKSWVQGNLTACGRSLFLFDEMDKMPPGLMEVLRPFLGSSWVVYGTNYRKAIFIFI 197
Y+ L+ W++GN++AC S+F+FDEMDK+ PG+++ ++PFL V G +YRKAIFIF+
Sbjct: 154 YQDQLQKWIRGNVSACANSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGVSYRKAIFIFL 213
>gi|115647957 torsin family 3, member A [Homo sapiens]
Length = 397
Score = 126 bits (317), Expect = 1e-29
Identities = 58/137 (42%), Positives = 86/137 (62%)
Query: 42 ECDFRPDLPGLECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSY 101
+C + GLE DL L GQHL + LV++ ++ ++ P P K L LS HGW+GTGK++
Sbjct: 116 DCRISNNFTGLEWDLNVRLHGQHLVQQLVLRTVRGYLETPQPEKALALSFHGWSGTGKNF 175
Query: 102 VSSLLAHYLFQGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFD 161
V+ +L L++ GL S V F HFPHP +++ YK+ L S ++ C ++LF+FD
Sbjct: 176 VARMLVENLYRDGLMSDCVRMFIATFHFPHPKYVDLYKEQLMSQIRETQQLCHQTLFIFD 235
Query: 162 EMDKMPPGLMEVLRPFL 178
E +K+ PGL+EVL P L
Sbjct: 236 EAEKLHPGLLEVLGPHL 252
>gi|197313702 torsin family 2, member A isoform d [Homo sapiens]
Length = 72
Score = 108 bits (271), Expect = 3e-24
Identities = 50/50 (100%), Positives = 50/50 (100%)
Query: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP 50
MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP
Sbjct: 1 MAAATRGCRPWGSLLGLLGLVSAAAAAWDLASLRCTLGAFCECDFRPDLP 50
>gi|116063568 hypothetical protein LOC54863 [Homo sapiens]
Length = 423
Score = 53.1 bits (126), Expect = 2e-07
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 46 RPDLPGLECDLAQHLAGQHLAKALVVKALKAFVRDPAPTKPLVLSLHGWTGTGKSYVSSL 105
R DL GLE L + + GQ A + +V ++ ++ ++PL+L+LHG +G GKS+V L
Sbjct: 147 RYDLDGLEKALQRAVFGQPAAVSRIVALMRDYLATHVHSRPLLLALHGPSGVGKSHVGRL 206
Query: 106 LAHYLFQGGLRSPRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRS----LFLFD 161
LA + S V + H P + +++L V + L + D
Sbjct: 207 LARHFRSVLEDSALVLQYHARHHCPEARAAQDCREELARRVADVVARAEAEEKTPLLVLD 266
Query: 162 EMDKMPPGLMEVLRPFLGSSWVVYGTNYRKAIFIFI---------RWLLKLGHHGRAPPR 212
+++ MP L++ L FL ++ AI++ + R++L+ + RA P
Sbjct: 267 DVELMPRPLLDELHGFLQPQ---RSHHFHNAIYVLLSGAGGAEVTRFVLQ--NASRALPL 321
Query: 213 RSGALPPAPAAPRPALRAQRA 233
R A AA A RA
Sbjct: 322 RPDGFRSAEAAAAQAEEDLRA 342
>gi|32483397 dopamine receptor D4 [Homo sapiens]
Length = 419
Score = 36.6 bits (83), Expect = 0.020
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 206 HGRAPPRRSGALPPAPAAPRPALRAQRAGP-AGPGAKG 242
HGRAP R SG PP+P P P L GP P A G
Sbjct: 231 HGRAPRRPSGPGPPSPTPPAPRLPQDPCGPDCAPPAPG 268
>gi|22749325 zinc finger protein 48 [Homo sapiens]
Length = 618
Score = 33.5 bits (75), Expect = 0.17
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 204 GHHGRAPPRRSGALP-----PAPAAPRPALRAQRAGPAGPGAKG 242
G R PP + P P P APRP +RAQ +GP+ P G
Sbjct: 503 GERARPPPPSTLLRPHNPPGPVPMAPRPRVRAQPSGPSQPHVCG 546
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 33.1 bits (74), Expect = 0.22
Identities = 19/34 (55%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 209 APPRRSGALPPAPAAPRPALRAQRAGPAGPGAKG 242
APPRR GA PAAP P R RAGP A G
Sbjct: 10 APPRRHGA----PAAPSPPPRGSRAGPVVVVAPG 39
>gi|84993742 tripartite motif-containing 71 [Homo sapiens]
Length = 868
Score = 33.1 bits (74), Expect = 0.22
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 205 HHGRAPPRRSGALPPAPAAPRPALRAQRAGPAGPGA 240
H A PR S + PP P AP+P R+ P GP A
Sbjct: 152 HAHHAHPRASASAPPLPQAPQPP-APSRSAPGGPAA 186
>gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens]
Length = 388
Score = 32.0 bits (71), Expect = 0.50
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 83 PTKPLVLSLHGWTGTGK-SYVSSLLAHYLFQGGLRSPRVHHFSPVLH-FPHPSHIE---- 136
P P+ L + G G+GK ++V L H QG P V + P +H P P++I+
Sbjct: 30 PRHPVCLLVLGMAGSGKTTFVQRLTGHLHAQG--TPPYVINLDPAVHEVPFPANIDIRDT 87
Query: 137 -RYKKDLKSWVQGNLTACGRSLFLF 160
+YK+ +K + G SL LF
Sbjct: 88 VKYKEVMKQYGLGPNGGIVTSLNLF 112
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 32.0 bits (71), Expect = 0.50
Identities = 19/35 (54%), Positives = 19/35 (54%), Gaps = 9/35 (25%)
Query: 212 RRSGALPPAPAA---------PRPALRAQRAGPAG 237
RR A PAPA PRP LRA RAGPAG
Sbjct: 160 RRWWAASPAPARLPSSLLGPDPRPGLRATRAGPAG 194
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 32.0 bits (71), Expect = 0.50
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 210 PPRRSGALPPAPAAPRPALRAQRAGPAGP 238
PP S P AP P+P LR Q P GP
Sbjct: 844 PPPASNPAPTAPGPPQPPLRPQSQPPEGP 872
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 32.0 bits (71), Expect = 0.50
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 190 RKAIFIFIRWLLKLGHHGRAPPRRSGALPPAPAAPRPALRAQRAGPAGP 238
+K + F R+++ + HG P +S A+PP P P +A R PA P
Sbjct: 263 QKDQYAFCRYMIDIFVHGDLKPGQSPAIPP----PLPTEQASRPTPASP 307
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 31.6 bits (70), Expect = 0.65
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 211 PRRSGALPPAPAAPRPALRAQRAGPAGPGAKG 242
P R G P A A P P R + AGPGA+G
Sbjct: 1936 PARRGPPPLARAVPEPGPRGRAGTEAGPGARG 1967
>gi|70166645 pseudouridine synthase 1 isoform 1 [Homo sapiens]
Length = 427
Score = 31.2 bits (69), Expect = 0.85
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 186 GTNYRKAIFIFIRWLLKLGHHGRAPPRRSG-ALPPAPAAPRPALRAQRAGPAG 237
G R + F RW L+LG PR +G A PP A P R +G AG
Sbjct: 2 GLQLRALLGAFGRWTLRLGPRPSCSPRMAGNAEPPPAGAACPQDRRSCSGRAG 54
>gi|13540606 caseinolytic peptidase B [Homo sapiens]
Length = 707
Score = 31.2 bits (69), Expect = 0.85
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 52 LECDLAQHLAGQHLAKALVVKALKAFVRDPAPTK-PLVLSLHGWTGTGKSYVSSLLAHYL 110
LE L +H+ GQ A A V A++ + PLV G +G GK+ ++ A Y+
Sbjct: 339 LEQRLKEHIIGQESAIATVGAAIRRKENGWYDEEHPLVFLFLGSSGIGKTELAKQTAKYM 398
Query: 111 FQGGLRS---------PRVHHFSPVLHFPHPSHIERYKKDLKSWVQGNLTACGRSLFLFD 161
+ + H + + P P ++ + + L C ++ LFD
Sbjct: 399 HKDAKKGFIRLDMSEFQERHEVAKFIGSP-PGYVGHEEG---GQLTKKLKQCPNAVVLFD 454
Query: 162 EMDKMPPGLMEVL 174
E+DK P ++ ++
Sbjct: 455 EVDKAHPDVLTIM 467
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 31.2 bits (69), Expect = 0.85
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 209 APPRRSGALPPAPAAPRPALRAQRAGPAGPGAK 241
APPR A P PAAP P R G A PGA+
Sbjct: 104 APPRPPPAAPSPPAAPGP-----RGGGASPGAR 131
Score = 28.5 bits (62), Expect = 5.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 209 APPRRSGAL--------PPAPAAPRPALRAQRAGPAGPGAKG 242
A PRR G+ PP PA PRP A + PA PG +G
Sbjct: 83 AAPRRRGSPERARPPPPPPPPAPPRPPPAAP-SPPAAPGPRG 123
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 31.2 bits (69), Expect = 0.85
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 209 APPRRSGALPPAPAAPRPALRAQRAGPAGPGAK 241
APPR A P PAAP P R G A PGA+
Sbjct: 104 APPRPPPAAPSPPAAPGP-----RGGGASPGAR 131
Score = 28.5 bits (62), Expect = 5.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 209 APPRRSGAL--------PPAPAAPRPALRAQRAGPAGPGAKG 242
A PRR G+ PP PA PRP A + PA PG +G
Sbjct: 83 AAPRRRGSPERARPPPPPPPPAPPRPPPAAP-SPPAAPGPRG 123
>gi|169214023 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 200 LLKLGHHGRAP----PRRSGALPPAPAAPRPALRAQRAG 234
LL GH RAP PR G PAPA P P R Q +G
Sbjct: 145 LLSSGHSTRAPGLHPPRNPGVQAPAPAPP-PPFRVQISG 182
>gi|169214468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 200 LLKLGHHGRAP----PRRSGALPPAPAAPRPALRAQRAG 234
LL GH RAP PR G PAPA P P R Q +G
Sbjct: 145 LLSSGHSTRAPGLHPPRNPGVQAPAPAPP-PPFRVQISG 182
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 30.8 bits (68), Expect = 1.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 208 RAPPRRSGA----LPPAPAAPRPALRAQRAGPAGPG 239
+APP+++GA PPAP +P L+ +R G G G
Sbjct: 334 QAPPQKAGAQALPAPPAPPGSQPFLQKKRHGRPGAG 369
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 30.4 bits (67), Expect = 1.4
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 187 TNYRKAIFIFIRWLLKLGHHGRAP---------PRRSGALPPAPAAPR------PALRAQ 231
+ Y A +F R +L H P P A PPAPAAP PA + +
Sbjct: 200 SEYTFADGVFRRRRKRLSHRAPVPAPGLRPEEAPGLPAAPPPAPAAPASPRMRSPARQEE 259
Query: 232 RAGPAG 237
RA PAG
Sbjct: 260 RASPAG 265
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 204 GHHGRAPPRRSGALPPAPAAPRPALRAQRAGPA-GPGAK 241
G R PP+ S PP PA P R RA A GPG++
Sbjct: 93 GRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSR 131
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 204 GHHGRAPPRRSGALPPAPAAPRPALRAQRAGPA-GPGAK 241
G R PP+ S PP PA P R RA A GPG++
Sbjct: 76 GRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSR 114
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 204 GHHGRAPPRRSGALPPAPAAPRPALRAQRAGPA-GPGAK 241
G R PP+ S PP PA P R RA A GPG++
Sbjct: 84 GRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSR 122
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 204 GHHGRAPPRRSGALPPAPAAPRPALRAQRAGPA-GPGAK 241
G R PP+ S PP PA P R RA A GPG++
Sbjct: 76 GRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSR 114
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 204 GHHGRAPPRRSGALPPAPAAPRPALRAQRAGPA-GPGAK 241
G R PP+ S PP PA P R RA A GPG++
Sbjct: 84 GRARRPPPQPSRPAPPPPAPPSALPRGGRAARAGGPGSR 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.140 0.464
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,683,771
Number of Sequences: 37866
Number of extensions: 598397
Number of successful extensions: 5023
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 4814
Number of HSP's gapped (non-prelim): 259
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.