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Search of human proteins with 195972803
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo
sapiens]
(437 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens] 881 0.0
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens] 859 0.0
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens] 825 0.0
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens] 760 0.0
gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens] 364 e-101
gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 341 9e-94
gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens] 339 3e-93
gi|239747524 PREDICTED: similar to serum response factor-related... 315 4e-86
gi|5032187 transducer of ERBB2, 1 [Homo sapiens] 55 1e-07
gi|55750053 atrophin-1 [Homo sapiens] 55 1e-07
gi|55750041 atrophin-1 [Homo sapiens] 55 1e-07
gi|196114999 special AT-rich sequence binding protein 1 [Homo sa... 54 3e-07
gi|4506791 special AT-rich sequence binding protein 1 [Homo sapi... 54 3e-07
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 54 4e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 54 4e-07
gi|50345997 E1A binding protein p300 [Homo sapiens] 53 5e-07
gi|169636435 caudal type homeobox 2 [Homo sapiens] 52 8e-07
gi|90903231 huntingtin [Homo sapiens] 52 8e-07
gi|38158015 mastermind-like 3 [Homo sapiens] 52 8e-07
gi|33286444 mastermind-like 2 [Homo sapiens] 52 1e-06
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 51 2e-06
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 50 4e-06
gi|56549696 E1A binding protein p400 [Homo sapiens] 49 1e-05
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 48 2e-05
gi|61743948 abl-interactor 1 isoform d [Homo sapiens] 48 2e-05
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 48 2e-05
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 48 2e-05
gi|61743944 abl-interactor 1 isoform b [Homo sapiens] 48 2e-05
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 48 2e-05
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 48 2e-05
>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
Length = 437
Score = 881 bits (2276), Expect = 0.0
Identities = 437/437 (100%), Positives = 437/437 (100%)
Query: 1 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR 60
MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR
Sbjct: 1 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR 60
Query: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN
Sbjct: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
Query: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV
Sbjct: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
Query: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPL 240
MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPL
Sbjct: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPL 240
Query: 241 ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH 300
ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH
Sbjct: 241 ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH 300
Query: 301 HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ 360
HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ
Sbjct: 301 HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ 360
Query: 361 PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 420
PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE
Sbjct: 361 PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 420
Query: 421 DRESPSVKRMRMDAWVT 437
DRESPSVKRMRMDAWVT
Sbjct: 421 DRESPSVKRMRMDAWVT 437
>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
Length = 429
Score = 859 bits (2220), Expect = 0.0
Identities = 429/437 (98%), Positives = 429/437 (98%), Gaps = 8/437 (1%)
Query: 1 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR 60
MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR
Sbjct: 1 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKR 60
Query: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN
Sbjct: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
Query: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV
Sbjct: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
Query: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPL 240
MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPP LNTQRISSSQATQPL
Sbjct: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPP--------LNTQRISSSQATQPL 232
Query: 241 ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH 300
ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH
Sbjct: 233 ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH 292
Query: 301 HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ 360
HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ
Sbjct: 293 HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ 352
Query: 361 PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 420
PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE
Sbjct: 353 PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 412
Query: 421 DRESPSVKRMRMDAWVT 437
DRESPSVKRMRMDAWVT
Sbjct: 413 DRESPSVKRMRMDAWVT 429
>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
Length = 497
Score = 825 bits (2132), Expect = 0.0
Identities = 411/420 (97%), Positives = 412/420 (98%), Gaps = 8/420 (1%)
Query: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVP 77
+TLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVP
Sbjct: 86 ETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVP 145
Query: 78 VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGG 137
VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGG
Sbjct: 146 VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGG 205
Query: 138 MLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMN 197
MLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMN
Sbjct: 206 MLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMN 265
Query: 198 SRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGL 257
SRKPDLRVVIPPSSKGMMPPL NTQRISSSQATQPLATPVVSVTTPSLPPQGL
Sbjct: 266 SRKPDLRVVIPPSSKGMMPPL--------NTQRISSSQATQPLATPVVSVTTPSLPPQGL 317
Query: 258 VYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLS 317
VYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLS
Sbjct: 318 VYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLS 377
Query: 318 QGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPR 377
QGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPR
Sbjct: 378 QGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPR 437
Query: 378 QEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT 437
QEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT
Sbjct: 438 QEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAWVT 497
>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
Length = 499
Score = 760 bits (1962), Expect = 0.0
Identities = 382/422 (90%), Positives = 394/422 (93%), Gaps = 10/422 (2%)
Query: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGP--PGLPPQNFSMSVT 75
+ L KK GC+SPD D + +P +E+++ K+NE+ D + + PGLPPQNFSMSVT
Sbjct: 86 EALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINEEFDNMMRNHKIAPGLPPQNFSMSVT 145
Query: 76 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA 135
VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA
Sbjct: 146 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA 205
Query: 136 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 195
GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG
Sbjct: 206 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 265
Query: 196 MNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQ 255
MNSRKPDLRVVIPPSSKGMMPPL NTQRISSSQATQPLATPVVSVTTPSLPPQ
Sbjct: 266 MNSRKPDLRVVIPPSSKGMMPPL--------NTQRISSSQATQPLATPVVSVTTPSLPPQ 317
Query: 256 GLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQ 315
GLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQ
Sbjct: 318 GLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQ 377
Query: 316 LSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 375
LSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ
Sbjct: 378 LSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ 437
Query: 376 PRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAW 435
PRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAW
Sbjct: 438 PRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAW 497
Query: 436 VT 437
VT
Sbjct: 498 VT 499
>gi|19923215 myocyte enhancer factor 2C isoform 1 [Homo sapiens]
Length = 473
Score = 364 bits (935), Expect = e-101
Identities = 228/432 (52%), Positives = 281/432 (65%), Gaps = 56/432 (12%)
Query: 18 QTLRKKGLNGCESPD--ADDYFEHSPLSEDRFSKLNEDSDFIFKRGPP-GLPPQNFSMSV 74
+TLRKKGLNGC+SPD ADD HSP SED++ K+NED D + R +PP NF M V
Sbjct: 86 ETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKINEDIDLMISRQRLCAVPPPNFEMPV 145
Query: 75 TVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN-VSPGAPQRPPSTG 133
++PV+S N+L Y+NP SSL +P+L L +L RN +SPG RPPS G
Sbjct: 146 SIPVSSHNSLVYSNPVSSLGNPNL-----------LPLAHPSLQRNSMSPGVTHRPPSAG 194
Query: 134 NAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGN 193
N GG++ DLT +GAG+S GNG+ N R SP L+ + G +L K M KSPPP N
Sbjct: 195 NTGGLMGG-DLT--SGAGTS-AGNGYGNPRNSPGLLVSPG--NLNKNMQAKSPPPM---N 245
Query: 194 LGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLP 253
LGMN+RKPDLRV+IPP SK MP +SE+ +L LN QRI++SQ+ Q LATPVVSV TP+LP
Sbjct: 246 LGMNNRKPDLRVLIPPGSKNTMPSVSEDVDLLLN-QRINNSQSAQSLATPVVSVATPTLP 304
Query: 254 PQGL--VYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQ---AALS 308
QG+ SA+ T Y T+YSL+SADLS+L GFN+ L LG V+ WQQ HL +ALS
Sbjct: 305 GQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGWQQQHLHNMPPSALS 364
Query: 309 SLVA--GGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQ 366
L A LSQ SNLS+ + Q+++IKSEP+SPPRDR T P
Sbjct: 365 QLGACTSTHLSQSSNLSLPSTQSLNIKSEPVSPPRDRTTT------------------PS 406
Query: 367 PQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPS 426
PQ R E GRSPVDSLSS SSSYDGSDRED R +FHSPI L R P+ ++RESPS
Sbjct: 407 RYPQ----HTRHEAGRSPVDSLSSCSSSYDGSDREDHRNEFHSPIGLTR-PSPDERESPS 461
Query: 427 VKRMRM-DAWVT 437
VKRMR+ + W T
Sbjct: 462 VKRMRLSEGWAT 473
>gi|5174545 myocyte enhancer factor 2D [Homo sapiens]
Length = 521
Score = 341 bits (874), Expect = 9e-94
Identities = 211/462 (45%), Positives = 268/462 (58%), Gaps = 73/462 (15%)
Query: 18 QTLRKKGLNGCESP--DADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVT 75
+TLRKKG NGC+SP D +D E SPL ED++ + +E+ D +F+R +P NF+M VT
Sbjct: 86 ETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRASEELDGLFRRYGSTVPAPNFAMPVT 145
Query: 76 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN-VSPGAPQRPPSTGN 134
VPV++ ++L ++NP SLV+PSL SS LTD +LSP Q L RN VSPG PQRP S
Sbjct: 146 VPVSNQSSLQFSNPSGSLVTPSLVTSS-LTDPRLLSPQQPALQRNSVSPGLPQRPAS--- 201
Query: 135 AGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGN- 193
AG ML DL NGA SPVGNG+V++RASP L+ NSL KV+P KSPPPP
Sbjct: 202 AGAMLGG-DLNSANGACPSPVGNGYVSARASPGLLPVANGNSLNKVIPAKSPPPPTHSTQ 260
Query: 194 LGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLP 253
LG SRKPDLRV+ + KG+M L+E+ N QR+ SQ+T L TPVVSV TPSL
Sbjct: 261 LGAPSRKPDLRVITSQAGKGLMHHLTEDHLDLNNAQRLGVSQSTHSLTTPVVSVATPSLL 320
Query: 254 PQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAW---------------- 297
QGL +S+MPTAYNTDY LTSA+LS+L F+SPG LSLG V+AW
Sbjct: 321 SQGLPFSSMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNVTAWQQPQQPQQPQQPQPPQ 380
Query: 298 ----------------------QQHHLGQAALSSLVAGGQLSQ-GSNLSINTNQNISIKS 334
QQ HL +LS+L+ G L G+ L++ T+ +ISIKS
Sbjct: 381 QQPPQPQQPQPQQPQQPQQPPQQQSHLVPVSLSNLIPGSPLPHVGAALTVTTHPHISIKS 440
Query: 335 EPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSS-SSS 393
EP+SP R+R P PPP +P+P D LSS +
Sbjct: 441 EPVSPSRER----------------SPAPPPPAVFPAARPEPG--------DGLSSPAGG 476
Query: 394 SYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAW 435
SY+ DR+D RGDF + L RP + E +VKRMR+D W
Sbjct: 477 SYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTW 518
>gi|196114945 myocyte enhancer factor 2C isoform 2 [Homo sapiens]
Length = 463
Score = 339 bits (869), Expect = 3e-93
Identities = 213/430 (49%), Positives = 269/430 (62%), Gaps = 62/430 (14%)
Query: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGP-PGLPPQNFSMSVTV 76
+ L KK GCESPD D + +P +E+++ K+NE+ D + K P +PP NF M V++
Sbjct: 86 EALNKKENKGCESPDPDSSYALTPRTEEKYKKINEEFDNMIKSHKIPAVPPPNFEMPVSI 145
Query: 77 PVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN-VSPGAPQRPPSTGNA 135
PV+S N+L Y+NP SSL +P+L L +L RN +SPG RPPS GN
Sbjct: 146 PVSSHNSLVYSNPVSSLGNPNL-----------LPLAHPSLQRNSMSPGVTHRPPSAGNT 194
Query: 136 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 195
GG++ DLT +GAG+S GNG+ N R SP L+ + G +L K M KSPPP NLG
Sbjct: 195 GGLMGG-DLT--SGAGTS-AGNGYGNPRNSPGLLVSPG--NLNKNMQAKSPPPM---NLG 245
Query: 196 MNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQ 255
MN+RKPDLRV+IPP SK MP ++ QRI++SQ+ Q LATPVVSV TP+LP Q
Sbjct: 246 MNNRKPDLRVLIPPGSKNTMPSVN---------QRINNSQSAQSLATPVVSVATPTLPGQ 296
Query: 256 GL--VYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQ---AALSSL 310
G+ SA+ T Y T+YSL+SADLS+L GFN+ L LG V+ WQQ HL +ALS L
Sbjct: 297 GMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSVTGWQQQHLHNMPPSALSQL 356
Query: 311 VA--GGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQ 368
A LSQ SNLS+ + Q+++IKSEP+SPPRDR T P
Sbjct: 357 GACTSTHLSQSSNLSLPSTQSLNIKSEPVSPPRDRTTT------------------PSRY 398
Query: 369 PQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVK 428
PQ R E GRSPVDSLSS SSSYDGSDRED R +FHSPI L R P+ ++RESPSVK
Sbjct: 399 PQ----HTRHEAGRSPVDSLSSCSSSYDGSDREDHRNEFHSPIGLTR-PSPDERESPSVK 453
Query: 429 RMRM-DAWVT 437
RMR+ + W T
Sbjct: 454 RMRLSEGWAT 463
>gi|239747524 PREDICTED: similar to serum response factor-related
protein C4 [Homo sapiens]
Length = 434
Score = 315 bits (808), Expect = 4e-86
Identities = 160/220 (72%), Positives = 179/220 (81%), Gaps = 2/220 (0%)
Query: 18 QTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRG--PPGLPPQNFSMSVT 75
+ L KK GC+S D D +P +E+++ K+NE+ D + + PGLPPQNFSMSVT
Sbjct: 204 EALNKKEHRGCDSSDPDTSCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQNFSMSVT 263
Query: 76 VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNA 135
VPV SPNALSYTNPGSSLVSPSLAASSTLTD + LSPPQT LHRNVSPGAPQRPPSTGNA
Sbjct: 264 VPVKSPNALSYTNPGSSLVSPSLAASSTLTDLNTLSPPQTILHRNVSPGAPQRPPSTGNA 323
Query: 136 GGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLG 195
GGML TTDLTVPNG GSSPVGN FVNSRASPNLIGATGANSLGKVMPTKSPPPPGG NLG
Sbjct: 324 GGMLGTTDLTVPNGTGSSPVGNEFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGSNLG 383
Query: 196 MNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQ 235
MNS KPDLRVVIP SSKGM PPL + E + + +S+++
Sbjct: 384 MNSGKPDLRVVIPASSKGMTPPLELKSERKRESSILSTNE 423
>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
Length = 345
Score = 55.5 bits (132), Expect = 1e-07
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 221 EEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAY---NTDYSLTSADL 277
E + E+ +Q P++ P SV++ PP G + PT + T+A
Sbjct: 123 ELDKEIKNSFNPEAQVFMPISDPASSVSSSPSPPFGHSAAVSPTFMPRSTQPLTFTTATF 182
Query: 278 SALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPI 337
+A + F S M + G+ ++++ S +++ N N +K + I
Sbjct: 183 AATK-FGSTKMKNSGR-------------------SNKVARTSPINLGLNVNDLLKQKAI 222
Query: 338 SPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSP 384
S + G QQQ QQQQQP PP P P P Q Q ++ SP
Sbjct: 223 SSSMHSLYGLGLGSQQQPQQQQQPAQPPPPPPPPQQQQQQKTSALSP 269
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 55.1 bits (131), Expect = 1e-07
Identities = 100/392 (25%), Positives = 138/392 (35%), Gaps = 74/392 (18%)
Query: 60 RGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTL--TDSSMLSPPQTTL 117
+ PPG PP + P P G + A+S++ + PP TT
Sbjct: 207 QAPPGAPPPH-------PQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTP 259
Query: 118 HRNVSPGA----PQRPPSTGNAGGMLS-----------TTDLTVP------NGAGSSPVG 156
S GA P +PP+T GG L T +L P N A +SP G
Sbjct: 260 ISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPG 319
Query: 157 NGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMP 216
G A P +++G+ M P P G L P + P SS P
Sbjct: 320 LG-----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLA-----PSPHSLPPASSSAPAP 369
Query: 217 PL--------SEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNT 268
P+ S ++ SSS + P + + S PP L S P Y T
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKY-T 428
Query: 269 DYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQ 328
SL S A+ P G++ A H G S+ G Q + +S + +
Sbjct: 429 QPSLPS---QAVWSQGPPPPPPYGRLLANSNAHPGPFPPST---GAQSTAHPPVSTHHHH 482
Query: 329 NISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSL 388
+ + + QQQQQQQQQQQ P PP P G S +
Sbjct: 483 HQQQQQQ--------------QQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAH 528
Query: 389 SSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 420
+ S GS R P G H P PP+++
Sbjct: 529 PYAMSPSLGSLRPYPPGPAHLP-----PPHSQ 555
Score = 30.8 bits (68), Expect = 2.5
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Query: 325 NTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSP 384
N + + SI S P S D + SG Q + PPP P PQPP PRQ
Sbjct: 128 NRSTSPSIYS-PGSVENDSDSSSGLSQGPARPYH--PPPLFPPSPQPPDSTPRQ------ 178
Query: 385 VDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESP 425
+S++ P G +H+P+ PP + ++P
Sbjct: 179 ------PEASFEPHPSVTPTG-YHAPM---EPPTSRMFQAP 209
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 55.1 bits (131), Expect = 1e-07
Identities = 100/392 (25%), Positives = 138/392 (35%), Gaps = 74/392 (18%)
Query: 60 RGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTL--TDSSMLSPPQTTL 117
+ PPG PP + P P G + A+S++ + PP TT
Sbjct: 207 QAPPGAPPPH-------PQLYPGGTGGVLSGPPMGPKGGGAASSVGGPNGGKQHPPPTTP 259
Query: 118 HRNVSPGA----PQRPPSTGNAGGMLS-----------TTDLTVP------NGAGSSPVG 156
S GA P +PP+T GG L T +L P N A +SP G
Sbjct: 260 ISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPG 319
Query: 157 NGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMP 216
G A P +++G+ M P P G L P + P SS P
Sbjct: 320 LG-----AQPLPGHLPSPHAMGQGMGGLPPGPEKGPTLA-----PSPHSLPPASSSAPAP 369
Query: 217 PL--------SEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNT 268
P+ S ++ SSS + P + + S PP L S P Y T
Sbjct: 370 PMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHSFPPPTSLSVSNQPPKY-T 428
Query: 269 DYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQ 328
SL S A+ P G++ A H G S+ G Q + +S + +
Sbjct: 429 QPSLPS---QAVWSQGPPPPPPYGRLLANSNAHPGPFPPST---GAQSTAHPPVSTHHHH 482
Query: 329 NISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSL 388
+ + + QQQQQQQQQQQ P PP P G S +
Sbjct: 483 HQQQQQQ--------------QQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAH 528
Query: 389 SSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 420
+ S GS R P G H P PP+++
Sbjct: 529 PYAMSPSLGSLRPYPPGPAHLP-----PPHSQ 555
Score = 30.8 bits (68), Expect = 2.5
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 19/101 (18%)
Query: 325 NTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSP 384
N + + SI S P S D + SG Q + PPP P PQPP PRQ
Sbjct: 128 NRSTSPSIYS-PGSVENDSDSSSGLSQGPARPYH--PPPLFPPSPQPPDSTPRQ------ 178
Query: 385 VDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESP 425
+S++ P G +H+P+ PP + ++P
Sbjct: 179 ------PEASFEPHPSVTPTG-YHAPM---EPPTSRMFQAP 209
>gi|196114999 special AT-rich sequence binding protein 1 [Homo
sapiens]
Length = 763
Score = 53.9 bits (128), Expect = 3e-07
Identities = 27/41 (65%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 350 QQQQQQQQQQQPPPPPQPQPQP---PQPQPRQEMGRSPVDS 387
QQQQQQQQQQQ PPPPQPQ QP P+ PRQ SP +S
Sbjct: 597 QQQQQQQQQQQAPPPPQPQQQPQTGPRLPPRQPTVASPAES 637
>gi|4506791 special AT-rich sequence binding protein 1 [Homo
sapiens]
Length = 763
Score = 53.9 bits (128), Expect = 3e-07
Identities = 27/41 (65%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 350 QQQQQQQQQQQPPPPPQPQPQP---PQPQPRQEMGRSPVDS 387
QQQQQQQQQQQ PPPPQPQ QP P+ PRQ SP +S
Sbjct: 597 QQQQQQQQQQQAPPPPQPQQQPQTGPRLPPRQPTVASPAES 637
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 53.5 bits (127), Expect = 4e-07
Identities = 54/212 (25%), Positives = 80/212 (37%), Gaps = 42/212 (19%)
Query: 64 GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSML----S 111
G PP + + T+ T + PG++ + P L A SST+T SS L +
Sbjct: 3945 GTPPSLITTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHT 4004
Query: 112 PP-----QTTLHRNVSPGAPQ--RPPSTGNAGGMLSTTDLTVPN-GAGSSPVGNGFVNSR 163
PP TT R++SP +P R T G L TT +T P+ G +P
Sbjct: 4005 PPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQH 4064
Query: 164 ASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEE 223
++P L ++ T+SPP PG G + PS
Sbjct: 4065 STPALSSPHPSS-----RTTESPPSPGTTTPGHTTATSRTTATATPSK------------ 4107
Query: 224 LELNTQRISSSQATQPLATPVVSVTTPSLPPQ 255
R S+ + P + P+ +V T PQ
Sbjct: 4108 -----TRTSTLLPSSPTSAPITTVVTTGCEPQ 4134
Score = 51.6 bits (122), Expect = 1e-06
Identities = 54/212 (25%), Positives = 79/212 (37%), Gaps = 42/212 (19%)
Query: 64 GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSML----S 111
G PP + + T+ T + PG++ + P L A SST+T SS L +
Sbjct: 2688 GTPPSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHT 2747
Query: 112 PP-----QTTLHRNVSPGAPQ--RPPSTGNAGGMLSTTDLTVPN-GAGSSPVGNGFVNSR 163
PP TT R++SP +P R T G L TT +T P+ G +P
Sbjct: 2748 PPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQH 2807
Query: 164 ASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEE 223
++P L ++ T+SPP PG G PS
Sbjct: 2808 STPALSSPHPSS-----RTTESPPSPGTTTPGHTRATSRTTATATPSK------------ 2850
Query: 224 LELNTQRISSSQATQPLATPVVSVTTPSLPPQ 255
R S+ + P + P+ +V T PQ
Sbjct: 2851 -----TRTSTLLPSSPTSAPITTVVTMGCEPQ 2877
Score = 48.9 bits (115), Expect = 9e-06
Identities = 53/212 (25%), Positives = 79/212 (37%), Gaps = 42/212 (19%)
Query: 64 GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSML----S 111
G PP + + T+ T + PG++ + P L A SST+T SS L +
Sbjct: 3388 GTPPSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHT 3447
Query: 112 PP-----QTTLHRNVSPGAPQ--RPPSTGNAGGMLSTTDLTVPNGAGS-SPVGNGFVNSR 163
PP TT R++ P +P R T G+L TT +T P+ S +P
Sbjct: 3448 PPVPNTTATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTPAATTSTTQH 3507
Query: 164 ASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEE 223
++P L ++ T+SPP PG G PS
Sbjct: 3508 STPALSSPHPSS-----RTTESPPSPGTTTPGHTRGTSRTTATATPSK------------ 3550
Query: 224 LELNTQRISSSQATQPLATPVVSVTTPSLPPQ 255
R S+ + P + P+ +V T PQ
Sbjct: 3551 -----TRTSTLLPSSPTSAPITTVVTTGCEPQ 3577
Score = 47.4 bits (111), Expect = 3e-05
Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 40/211 (18%)
Query: 64 GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSML----S 111
G PP + + T+ T + PG++ + P L A S+T+T SS L +
Sbjct: 2131 GTPPSLTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSNTVTPSSALGTTHT 2190
Query: 112 PP-----QTTLHRNVSPGAPQ--RPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRA 164
PP TT R++ P +P R T G+L TT +T P+ S + ++
Sbjct: 2191 PPVPNTMATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTLAATTGTTQH 2250
Query: 165 SPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEEL 224
S + + +S T+SPP PG G + PS
Sbjct: 2251 STPALSSPHPSS----RTTESPPSPGTTTPGHTTATSRTTATATPSK------------- 2293
Query: 225 ELNTQRISSSQATQPLATPVVSVTTPSLPPQ 255
R S+ + P + P+ +V T PQ
Sbjct: 2294 ----TRTSTLLPSSPTSAPITTVVTMGCEPQ 2320
Score = 40.8 bits (94), Expect = 0.002
Identities = 54/225 (24%), Positives = 83/225 (36%), Gaps = 39/225 (17%)
Query: 69 NFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQR 128
N+ + P TS A+ + PG++ + L ++T T+S+ G+
Sbjct: 2413 NYGHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTEST---------------GSTAT 2457
Query: 129 PPSTGNAGGML----STTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTK 184
P ST +L +T +TVP G+ ++ + T + K P
Sbjct: 2458 PSSTPGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPFS 2517
Query: 185 SPPPPGGGNLGMNSRKPDLR--VVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLAT 242
SP G + P LR P ++ P S L T SQ T P AT
Sbjct: 2518 SP--------GTATALPALRSTATTPTATSFTAIPSS-----SLGTTWTRLSQTTTPTAT 2564
Query: 243 PVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPG 287
+S TPS P+ + S T T + T A S ++PG
Sbjct: 2565 --MSTATPSSTPETVHTS---TVLTTTATTTGATGSVATPSSTPG 2604
Score = 39.3 bits (90), Expect = 0.007
Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 35/220 (15%)
Query: 67 PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSMLSPPQTTLH 118
P + + T VTS A +++PG++ P+L A S T SS L T L
Sbjct: 3754 PHVSTTATTPTVTSSKATPFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLS 3813
Query: 119 RNVSPGA------PQRPPSTGNAGGMLSTTDLTV-PNGAGSSPVGN-GFVNSRASPNLIG 170
+ +P A P P T + +L+TT T G+ ++P G ++ P
Sbjct: 3814 QTTTPTATMSTATPSSTPETAHTSTVLTTTATTTRATGSVATPSSTPGTAHTTKVP---- 3869
Query: 171 ATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRV---VIPPSSKGMMPPLSEEEELELN 227
T + V P+ SP +R P + + P +S + P S
Sbjct: 3870 -TTTTTGFTVTPSSSPG---------TARTPPVWISTTTTPTTSGSTVTPSSVPGTTHTP 3919
Query: 228 T--QRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTA 265
T +++ AT +ATP S T PP + + TA
Sbjct: 3920 TVLTTTTTTVATGSMATPSSSTQTSGTPPSLITTATTITA 3959
Score = 38.9 bits (89), Expect = 0.009
Identities = 47/202 (23%), Positives = 85/202 (42%), Gaps = 18/202 (8%)
Query: 66 PPQNFSMSVTVP-VTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSP-PQTTLHRNVSP 123
PP+ + + T P VTS A ++PG++ P+L +++T ++ ++P P ++L +
Sbjct: 1938 PPKVLTTTATTPTVTSSKATPSSSPGTATALPALRSTATTPTATSVTPIPSSSLGTTWT- 1996
Query: 124 GAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPT 183
+ +T M + T + P A +S V + + + AT +++ G T
Sbjct: 1997 ---RLSQTTTPTATMSTATPSSTPETAHTSTVLTATATTTGATGSV-ATPSSTPGTAHTT 2052
Query: 184 KSPPPPGGGNLGMNSRKPDLRVVIP--------PSSKG-MMPPLSEEEELELNT--QRIS 232
K P G S P + P P+++G + P S T +
Sbjct: 2053 KVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRGSTVTPSSIPGTTHTATVLTTTT 2112
Query: 233 SSQATQPLATPVVSVTTPSLPP 254
++ AT +ATP S T PP
Sbjct: 2113 TTVATGSMATPSSSTQTSGTPP 2134
Score = 38.5 bits (88), Expect = 0.012
Identities = 54/225 (24%), Positives = 81/225 (36%), Gaps = 39/225 (17%)
Query: 69 NFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQR 128
N+ + P TS A + PG++ + L ++T T+S+ G+
Sbjct: 3670 NYGHCPSTPATSSTATPSSTPGTTWILTKLTTTATTTEST---------------GSTAT 3714
Query: 129 PPSTGNAGGML----STTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTK 184
P ST +L +T +TVP G+ ++ + T + K P
Sbjct: 3715 PSSTPGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPFS 3774
Query: 185 SPPPPGGGNLGMNSRKPDLR--VVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLAT 242
SP G + P LR P ++ P S L T SQ T P AT
Sbjct: 3775 SP--------GTATALPALRSTATTPTATSFTAIPSS-----SLGTTWTRLSQTTTPTAT 3821
Query: 243 PVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPG 287
+S TPS P+ S T T + T A S ++PG
Sbjct: 3822 --MSTATPSSTPETAHTS---TVLTTTATTTRATGSVATPSSTPG 3861
Score = 38.5 bits (88), Expect = 0.012
Identities = 50/209 (23%), Positives = 75/209 (35%), Gaps = 36/209 (17%)
Query: 73 SVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPST 132
+ T T P A + PG++ + L ++T T S G+ P ST
Sbjct: 4402 ATTTAATGPTATPSSTPGTTWILTELTTTATTT---------------ASTGSTATPSST 4446
Query: 133 GNAGGML----STTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPP 188
+L +T +TVP G+ ++ + T + K P+ SP
Sbjct: 4447 PGTTWILTEPSTTATVTVPTGSTATASSTQATAGTPHVSTTATTPTVTSSKATPSSSP-- 4504
Query: 189 PGGGNLGMNSRKPDLR--VVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVS 246
G + P LR P ++ P S L T SQ T P AT +S
Sbjct: 4505 ------GTATALPALRSTATTPTATSFTAIPSS-----SLGTTWTRLSQTTTPTAT--MS 4551
Query: 247 VTTPSLPPQGLVYSAMPTAYNTDYSLTSA 275
TPS P+ + S + TA T T +
Sbjct: 4552 TATPSSTPETVHTSTVLTATATTTGATGS 4580
Score = 35.8 bits (81), Expect = 0.079
Identities = 53/213 (24%), Positives = 79/213 (37%), Gaps = 43/213 (20%)
Query: 67 PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSMLSPPQTTLH 118
P + + T VTS A +++PG++ P+L A S T SS L T L
Sbjct: 2497 PHVSTTATTPTVTSSKATPFSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLS 2556
Query: 119 RNVSPGA------PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT 172
+ +P A P P T + +L+TT T G S A+P+
Sbjct: 2557 QTTTPTATMSTATPSSTPETVHTSTVLTTTATT-----------TGATGSVATPS--STP 2603
Query: 173 GANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIP--------PSSKG-MMPPLSEEEE 223
G KV+ T + G S P +P P+++G + P S
Sbjct: 2604 GTAHTTKVLTTTTT-----GFTATPSSSPGTARTLPVWISTTTTPTTRGSTVTPSSIPGT 2658
Query: 224 LELNT--QRISSSQATQPLATPVVSVTTPSLPP 254
T +++ AT +ATP S T PP
Sbjct: 2659 THTPTVLTTTTTTVATGSMATPSSSTQTSGTPP 2691
Score = 35.8 bits (81), Expect = 0.079
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 73 SVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPP-----QTTLHRNVSPGAPQ 127
SV P ++P ++T + + A+ + + + L+PP TT S P
Sbjct: 3295 SVATPSSTPGT-AHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRGSTVTPS 3353
Query: 128 RPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNL------IGATGANSLGKVM 181
P T + +L+TT TV G+ ++P + S P+L I ATG+ +
Sbjct: 3354 SIPGTTHTATVLTTTTTTVATGSMATP-SSSTQTSGTPPSLTTTATTITATGSTTNPSST 3412
Query: 182 PTKSPPPP 189
P +P PP
Sbjct: 3413 PGTTPIPP 3420
Score = 35.8 bits (81), Expect = 0.079
Identities = 41/186 (22%), Positives = 70/186 (37%), Gaps = 23/186 (12%)
Query: 69 NFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQR 128
N+ + P TS A+ + PG++ + L ++T T S+ S P
Sbjct: 4227 NYGHCPSTPATSSTAMPSSTPGTTWILTELTTTATTTAST------------GSTATPSS 4274
Query: 129 PPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPP 188
P T +L T+ T P S + + + ++ +T S S P
Sbjct: 4275 TPGTAPPPKVL-TSPATTPTATSSKATSSSSPRTATTLPVLTSTATKS-----TATSVTP 4328
Query: 189 PGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVT 248
LG P+ + P ++ + P S E +T + +++AT AT S +
Sbjct: 4329 IPSSTLGTTGTLPE-QTTTPVATMSTIHPSSTPE--TTHTSTVLTTKATTTRATS--STS 4383
Query: 249 TPSLPP 254
TPS P
Sbjct: 4384 TPSSTP 4389
Score = 35.0 bits (79), Expect = 0.13
Identities = 52/209 (24%), Positives = 79/209 (37%), Gaps = 43/209 (20%)
Query: 71 SMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSMLSPPQTTLHRNVS 122
S + T V S A ++PG++ P+L A S T SS L T L + +
Sbjct: 3201 STATTPTVISSRATPSSSPGTATALPALRSTATTPTATSVTAIPSSSLGTAWTRLSQTTT 3260
Query: 123 PGA------PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANS 176
P A P P T + +L+TT T +RA+ ++ AT +++
Sbjct: 3261 PTATMSTATPSSTPETVHTSTVLTTTTTT----------------TRATGSV--ATPSST 3302
Query: 177 LGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIP--------PSSKG-MMPPLSEEEELELN 227
G TK P G S P + P P+++G + P S
Sbjct: 3303 PGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRGSTVTPSSIPGTTHTA 3362
Query: 228 T--QRISSSQATQPLATPVVSVTTPSLPP 254
T +++ AT +ATP S T PP
Sbjct: 3363 TVLTTTTTTVATGSMATPSSSTQTSGTPP 3391
Score = 35.0 bits (79), Expect = 0.13
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%)
Query: 76 VPVTSPNALSYT---NPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPST 132
VP T+ + T +PG++L P +++T +P TT + S P P T
Sbjct: 4596 VPTTTTTGFTATPSSSPGTALTPPVWISTTT-------TPTTTTPTTSGSTVTPSSIPGT 4648
Query: 133 GNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNL------IGATGANSLGKVMPTKSP 186
+ +L+TT TV G+ ++P + S P+L I ATG+ + P +P
Sbjct: 4649 THTARVLTTTTTTVATGSMATP-SSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGTTP 4707
Query: 187 PPP 189
P
Sbjct: 4708 ITP 4710
Score = 34.7 bits (78), Expect = 0.18
Identities = 57/241 (23%), Positives = 83/241 (34%), Gaps = 38/241 (15%)
Query: 67 PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSL--------AASSTLTDSSMLSPPQTTLH 118
P + + T VTS A ++PG++ P+L A S T SS L T L
Sbjct: 4482 PHVSTTATTPTVTSSKATPSSSPGTATALPALRSTATTPTATSFTAIPSSSLGTTWTRLS 4541
Query: 119 RNVSPGA------PQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT 172
+ +P A P P T + +L+ T T GA S AT
Sbjct: 4542 QTTTPTATMSTATPSSTPETVHTSTVLTATATT--TGATGSV----------------AT 4583
Query: 173 GANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRIS 232
+++ G TK P G S P + P P + +T S
Sbjct: 4584 PSSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTTTPTTSGSTVTPS 4643
Query: 233 SSQAT----QPLATPVVSVTTPSL--PPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSP 286
S T + L T +V T S+ P S P + T + +A S ++P
Sbjct: 4644 SIPGTTHTARVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTP 4703
Query: 287 G 287
G
Sbjct: 4704 G 4704
Score = 34.3 bits (77), Expect = 0.23
Identities = 48/188 (25%), Positives = 69/188 (36%), Gaps = 14/188 (7%)
Query: 89 PGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAG--GMLSTTDLTV 146
P + S + SST + +L+ P TT S G+ P ST + TT T
Sbjct: 1889 PSTPATSSTATPSSTPGTTWILTKPTTTATTTASTGSTATPTSTLRTAPPPKVLTTTATT 1948
Query: 147 PNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPT-KSPPPPGGGNLGMNSRKPDLRV 205
P S +SP A A PT S P +LG + +
Sbjct: 1949 PTVTSSK------ATPSSSPGTATALPALRSTATTPTATSVTPIPSSSLGTTWTRLS-QT 2001
Query: 206 VIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTA 265
P ++ P S E +T + ++ AT AT SV TPS P + +PT
Sbjct: 2002 TTPTATMSTATPSSTPE--TAHTSTVLTATATTTGATG--SVATPSSTPGTAHTTKVPTT 2057
Query: 266 YNTDYSLT 273
T ++ T
Sbjct: 2058 TTTGFTAT 2065
Score = 33.9 bits (76), Expect = 0.30
Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 27/188 (14%)
Query: 69 NFSMSVTVPVTSPNALSYTNPGSS--LVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAP 126
N+ + P TS A + PG++ L + AA++T T S P T PG
Sbjct: 2970 NYGHCPSTPATSSTATPSSTPGTTWILTEQTTAATTTATTGSTAIPSST-------PGTA 3022
Query: 127 QRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSP 186
P + T+ T P S + + + ++ +T S T
Sbjct: 3023 PPP--------KVLTSTATTPTATSSKATSSSSPRTATTLPVLTSTATKSTA----TSFT 3070
Query: 187 PPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVS 246
P P LG P+ + P ++ + P S E +T + +++AT AT S
Sbjct: 3071 PIP-SFTLGTTGTLPE-QTTTPMATMSTIHPSSTPE--TTHTSTVLTTKATTTRATS--S 3124
Query: 247 VTTPSLPP 254
++TPS P
Sbjct: 3125 MSTPSSTP 3132
Score = 33.5 bits (75), Expect = 0.39
Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 30/215 (13%)
Query: 73 SVTVPVTSPNA------LSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAP 126
S++ P ++P L+ ++ P+ SST + +L+ P TT V G+
Sbjct: 3124 SMSTPSSTPGTTWILTELTTAATTTAATGPTATPSSTPGTTWILTEPSTTATVTVPTGST 3183
Query: 127 QRPPSTGNAGGMLS--TTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTK 184
ST G L T+ T P ++SRA+P+ T A +L + T
Sbjct: 3184 ATASSTRATAGTLKVLTSTATTPT----------VISSRATPSSSPGT-ATALPALRSTA 3232
Query: 185 SPPPP------GGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQ 238
+ P +LG + + P ++ P S E + +T +++ T+
Sbjct: 3233 TTPTATSVTAIPSSSLGTAWTRLS-QTTTPTATMSTATPSSTPETVHTSTVLTTTTTTTR 3291
Query: 239 PLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLT 273
SV TPS P + +PT T ++ T
Sbjct: 3292 ATG----SVATPSSTPGTAHTTKVPTTTTTGFTAT 3322
Score = 32.7 bits (73), Expect = 0.67
Identities = 49/233 (21%), Positives = 87/233 (37%), Gaps = 20/233 (8%)
Query: 66 PPQNFSMSVT------------VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPP 113
PP S + T +P T+ A T +++ + S+A S+ T +S P
Sbjct: 3333 PPVWISTTTTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPS 3392
Query: 114 QTTLHRNV-SPGAPQRPPSTGNAGGM--LSTTDLTVPNGAGSSPVGNGFVNSRASPNLIG 170
TT + + G+ P ST + + TT T P S+ + + + +P +
Sbjct: 3393 LTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPN 3452
Query: 171 ATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQR 230
T A + G+ +P SP S + PS+ P + + +T
Sbjct: 3453 TT-ATTHGRSLPPSSPHTVRTAWTSATSGILGTTHITEPSTVTSHTPAATTSTTQHSTPA 3511
Query: 231 IS----SSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSA 279
+S SS+ T+ +P + + +A P+ T L S+ SA
Sbjct: 3512 LSSPHPSSRTTESPPSPGTTTPGHTRGTSRTTATATPSKTRTSTLLPSSPTSA 3564
Score = 32.3 bits (72), Expect = 0.87
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 73 SVTVPVTSPNALSYTNPGSSL-----VSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQ 127
SV P ++P T ++ V+PS + + T +S TT + S P
Sbjct: 3852 SVATPSSTPGTAHTTKVPTTTTTGFTVTPSSSPGTARTPPVWISTT-TTPTTSGSTVTPS 3910
Query: 128 RPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNL------IGATGANSLGKVM 181
P T + +L+TT TV G+ ++P + S P+L I ATG+ +
Sbjct: 3911 SVPGTTHTPTVLTTTTTTVATGSMATP-SSSTQTSGTPPSLITTATTITATGSTTNPSST 3969
Query: 182 PTKSPPPP 189
P +P PP
Sbjct: 3970 PGTTPIPP 3977
Score = 31.2 bits (69), Expect = 1.9
Identities = 40/201 (19%), Positives = 78/201 (38%), Gaps = 30/201 (14%)
Query: 66 PPQNFSMSVT------------VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPP 113
PP S + T +P T+ A T +++ + S+A S+ T +S P
Sbjct: 2076 PPVWISTTTTPTTRGSTVTPSSIPGTTHTATVLTTTTTTVATGSMATPSSSTQTSGTPPS 2135
Query: 114 QTTLHRNV-SPGAPQRPPSTGNAGGM--LSTTDLTVPNGAGSSPVGNGFVNSRASPNLIG 170
TT + + G+ P ST + + TT T P ++ + + + +P +
Sbjct: 2136 LTTTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSNTVTPSSALGTTHTPP-VP 2194
Query: 171 ATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQR 230
T A + G+ +P SP +R ++ G++ E + +
Sbjct: 2195 NTMATTHGRSLPPSSP--------------HTVRTAWTSATSGILGTTHITEPSTVTSHT 2240
Query: 231 ISSSQATQPLATPVVSVTTPS 251
++++ T +TP +S PS
Sbjct: 2241 LAATTGTTQHSTPALSSPHPS 2261
Score = 30.0 bits (66), Expect = 4.3
Identities = 43/222 (19%), Positives = 80/222 (36%), Gaps = 13/222 (5%)
Query: 62 PPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNV 121
P +P + +V T+ A SS S S +T ++ ++ +T + +
Sbjct: 3909 PSSVPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLITTATTITATGSTTNPSS 3968
Query: 122 SPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVM 181
+PG PP + TT T P S+ + + + +P + T A + G+ +
Sbjct: 3969 TPGTTPIPP--------VLTTTATTPAATSSTVTPSSALGTTHTPPVPNTT-ATTHGRSL 4019
Query: 182 PTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRIS----SSQAT 237
SP S + PS+ P + + +T +S SS+ T
Sbjct: 4020 SPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQHSTPALSSPHPSSRTT 4079
Query: 238 QPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSA 279
+ +P + + +A P+ T L S+ SA
Sbjct: 4080 ESPPSPGTTTPGHTTATSRTTATATPSKTRTSTLLPSSPTSA 4121
Score = 29.3 bits (64), Expect = 7.4
Identities = 46/223 (20%), Positives = 82/223 (36%), Gaps = 15/223 (6%)
Query: 62 PPGLPPQNFSMSVTVPVTSPNAL-SYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
P +P + +V T+ A S P SS + S T T +++ + TT + +
Sbjct: 2652 PSSIPGTTHTPTVLTTTTTTVATGSMATPSSSTQTSGTPPSLTTTATTITATGSTT-NPS 2710
Query: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
+PG PP + TT T P S+ + + + +P + T A + G+
Sbjct: 2711 STPGTTPIPP--------VLTTTATTPAATSSTVTPSSALGTTHTPPVPNTT-ATTHGRS 2761
Query: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRIS----SSQA 236
+ SP S + PS+ P + + +T +S SS+
Sbjct: 2762 LSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQHSTPALSSPHPSSRT 2821
Query: 237 TQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSA 279
T+ +P + + +A P+ T L S+ SA
Sbjct: 2822 TESPPSPGTTTPGHTRATSRTTATATPSKTRTSTLLPSSPTSA 2864
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 53.5 bits (127), Expect = 4e-07
Identities = 101/418 (24%), Positives = 151/418 (36%), Gaps = 56/418 (13%)
Query: 43 SEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTN-----PGSSLVSPS 97
S R + ++ + R P N + S T +P +L+ G++L SP
Sbjct: 2325 SSSRTPQAPASANLVGPRSAHATAPVNIAGSRTAAALAPASLTSARMAPALSGANLTSPR 2384
Query: 98 LAASSTLTDSSMLSPPQTTLHRN-VSPGAP-------QRPPSTGNAGGMLSTTDLTVP-N 148
+ S+ S SPP R+ P AP +R PS + G + L P
Sbjct: 2385 VPLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQ 2444
Query: 149 GAGSSPVGNGFVNSRASPNLIGAT----GANSL--GKVMPTKSPPPPGGGNLGMNSRK-P 201
SPV + F S S LI T G+ SL G V T S G L + + P
Sbjct: 2445 DQPRSPVPSAF--SDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVP 2502
Query: 202 DLRVVIPPSSKGM--------MPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLP 253
V PP+S G + P E ++ SSS ++ ++ S + S
Sbjct: 2503 HSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSD 2562
Query: 254 PQGLVYSAMP-TAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVA 312
+G P A S T A A++ P + ++ SS +
Sbjct: 2563 SEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSS 2622
Query: 313 GGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPP 372
S S+ S +++ + S S SP + P Q P P +PP
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGP-------------QALPKPASPKKPP 2669
Query: 373 QPQPRQEMGRSPVDSLSSSSS-SYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKR 429
+ R R P+DSL S S SY +R P SP P+ D++S S +R
Sbjct: 2670 PGERRSRSPRKPIDSLRDSRSLSYSPVERRRP-----SP-----QPSPRDQQSSSSER 2717
Score = 43.5 bits (101), Expect = 4e-04
Identities = 85/387 (21%), Positives = 133/387 (34%), Gaps = 81/387 (20%)
Query: 60 RGPPGLPPQNFSMSVT-VPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLH 118
R PP + + ++ VP P T P ++L S AAS+ + + P
Sbjct: 2194 RPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTPAIPTA 2253
Query: 119 RNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLG 178
N+ A R P+ A + S P+ + + + + NL GA +L
Sbjct: 2254 VNL---ADSRTPAAAAAMNLASPRTAVAPSAVN---LADPRTPTAPAVNLAGARTPAALA 2307
Query: 179 KVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQ 238
+ T S PP N +SR P P+S ++ P S +N I+ S+
Sbjct: 2308 ALSLTGSGTPPTAANYPSSSRTPQ-----APASANLVGPRSAHATAPVN---IAGSRTAA 2359
Query: 239 PLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQ 298
LA S+T+ + P A+ A T + + + G SP +L +
Sbjct: 2360 ALAP--ASLTSARMAP------ALSGANLTSPRVPLSAYERVSGRTSPPLLDRAR----- 2406
Query: 299 QHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMT----PSGFQQQQQ 354
++ P +P + RMT PS +
Sbjct: 2407 ---------------------------------SRTPPSAPSQSRMTSERAPSP-SSRMG 2432
Query: 355 QQQQQQPPPPPQPQPQPPQPQPRQEMGR------SPV---DSLSSSSSSYDGSDREDPRG 405
Q Q PP Q QP+ P P + R +PV SLSS + + S D G
Sbjct: 2433 QAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNG 2492
Query: 406 DFHSPIV------LGRPPNTEDRESPS 426
P +G PP + + PS
Sbjct: 2493 MLSVPAPGVPHSDVGEPPASTGAQQPS 2519
Score = 39.3 bits (90), Expect = 0.007
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 332 IKSEPISPP------RDRMTPSGFQQQQQQQQQQQPPPPPQP---------QPQPPQPQP 376
+ EP++PP RDR P ++ Q + PP PQP P+ P+P P
Sbjct: 386 LSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAP 445
Query: 377 RQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSP 410
R S +S + S+ + R+ + H+P
Sbjct: 446 APGSHREISSSPTSKNRSHGRAKRD--KSHSHTP 477
Score = 36.2 bits (82), Expect = 0.060
Identities = 80/347 (23%), Positives = 124/347 (35%), Gaps = 31/347 (8%)
Query: 95 SPSLAASST--LTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGS 152
SP SST S S PQ + +SP QR S ++ T T P + S
Sbjct: 895 SPPRVKSSTPPRQSPSRSSSPQPKVKAIISPR--QRSHSGSSSPSPSRVTSRTTPRRSRS 952
Query: 153 -SPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPP-- 209
SP N V SR P + ++ KV P PP + G S P ++ PP
Sbjct: 953 VSPCSN--VESRLLPRYSHSGSSSPDTKVKPET---PPRQSHSGSISPYPKVKAQTPPGP 1007
Query: 210 SSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTD 269
S G P +E+ + + S + L V S T P G+ + T
Sbjct: 1008 SLSGSKSPCPQEKSKD---SLVQSCPGSLSLCAGVKSSTPPGESYFGVSSLQLKGQSQTS 1064
Query: 270 ---YSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAG-------GQLSQG 319
S TS+ SP + S Q S + ++ L + G+ S
Sbjct: 1065 PDHRSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQDRGEFSAS 1124
Query: 320 SNLSINTNQNIS-IKSEPISPPR-DRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPR 377
L + S +S+ S P D + G + + + +++ PPQ P+ +
Sbjct: 1125 PMLKSGMSPEQSRFQSDSSSYPTVDSNSLLGQSRLETAESKEKMALPPQEDATASPPRQK 1184
Query: 378 QEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRES 424
+ PV SS + + R PR + G P T+++ S
Sbjct: 1185 DKFSPFPVQDRPESSLVFKDTLRTPPRERSGA----GSSPETKEQNS 1227
Score = 32.3 bits (72), Expect = 0.87
Identities = 75/355 (21%), Positives = 121/355 (34%), Gaps = 77/355 (21%)
Query: 80 SPNALSYTNPGSSLV--SPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQR-----PPST 132
S ++LS ++PG + +PS S + + PQT R+ SP +P+ P
Sbjct: 1455 SRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQR 1514
Query: 133 GNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGG 192
+G S TV +P+G SR+ G++ V P+ SP
Sbjct: 1515 ERSGSESSVDQKTVAR----TPLGQ---RSRS--------GSSQELDVKPSASPQERSES 1559
Query: 193 NLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQ--PLATPVVSVTTP 250
+ +S+ + S G P + + L R SS + P A P +
Sbjct: 1560 DSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSD 1619
Query: 251 SLP-PQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSS 309
S P P+ A+P + G +S G
Sbjct: 1620 SSPEPKAPAPRALPRRSRS-------------GSSSKGR--------------------- 1645
Query: 310 LVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQP 369
G +GS+ S +S P PP+ R G + + + + + PP +
Sbjct: 1646 ----GPSPEGSS---------STESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSR 1692
Query: 370 QPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRES 424
P+ + + R S+SSS + R PR SP V P + R S
Sbjct: 1693 SSPELTRKARLSRRS----RSASSSPETRSRTPPR-HRRSPSVSSPEPAEKSRSS 1742
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 77 PVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTL--HRNVSPGAPQRPPSTGN 134
PV P+ S T S SP S+ ++SS SP T + H + SP +P+ P+ G+
Sbjct: 390 PVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGS 449
Score = 30.4 bits (67), Expect = 3.3
Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 23/167 (13%)
Query: 273 TSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQG----SNLSINTNQ 328
TSAD ++ +S S + +A + H A S A G+ +G S + Q
Sbjct: 264 TSADSAS----SSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQ 319
Query: 329 NIS----IKSEPISP----PRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQ-------PPQ 373
S +P SP +D+ S + ++ P PP P P PQ
Sbjct: 320 RPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQ 379
Query: 374 PQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE 420
P + + PV+ S +S + D S + P S PP+ +
Sbjct: 380 PLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQ 426
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 53.1 bits (126), Expect = 5e-07
Identities = 75/308 (24%), Positives = 113/308 (36%), Gaps = 51/308 (16%)
Query: 152 SSPVGNGFVNS--RASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPP 209
SSP+ V S A+P L+ A K S P P G GM +P L+ P
Sbjct: 2062 SSPLQQQQVLSILHANPQLLAAFIKQRAAKY--ANSNPQPIPGQPGMPQGQPGLQPPTMP 2119
Query: 210 SSKGMM--PPLSEEEELELNTQRIS-SSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAY 266
+G+ P + ++ QR Q Q P + +P + ++ MP+ +
Sbjct: 2120 GQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPMGGMSPQAQQMNMNHNTMPSQF 2179
Query: 267 NT----DYSLTSADLSALQGFNSPGMLSLGQVSAWQ------------QHHLGQAALSSL 310
+ PGM + Q Q QHH+ Q ++
Sbjct: 2180 RDILRRQQMMQQQQQQGAGPGIGPGMANHNQFQQPQGVGYPPQQQQRMQHHMQQMQQGNM 2239
Query: 311 VAGGQLSQG----SNLSINTNQNISIKSE---PISP----PRDRMTPSGFQQQQQQQQQ- 358
GQL Q + S+ Q ++ + P+ P P+ M P+ Q Q QQ
Sbjct: 2240 GQIGQLPQALGAEAGASLQAYQQRLLQQQMGSPVQPNPMSPQQHMLPNQAQSPHLQGQQI 2299
Query: 359 ----------QQPPPPPQPQPQPP--QPQPRQEMGRSPVDSLSSSSSSYDG--SDREDP- 403
QP P P+PQ QPP P PR + SP +SS + G + + +P
Sbjct: 2300 PNSLSNQVRSPQPVPSPRPQSQPPHSSPSPRMQPQPSPHHVSPQTSSPHPGLVAAQANPM 2359
Query: 404 -RGDFHSP 410
+G F SP
Sbjct: 2360 EQGHFASP 2367
Score = 32.7 bits (73), Expect = 0.67
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 336 PISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP 376
P P TP+G QQ Q P P QPQP PP P
Sbjct: 1848 PSPTPATPTTPTG----QQPTTPQTPQPTSQPQPTPPNSMP 1884
Score = 30.8 bits (68), Expect = 2.5
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 339 PPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQE 379
PPR TP Q QQ QP P P PQ QPR +
Sbjct: 881 PPRQTPTPP----TTQLPQQVQPSLPAAPSADQPQQQPRSQ 917
Score = 30.4 bits (67), Expect = 3.3
Identities = 61/313 (19%), Positives = 108/313 (34%), Gaps = 30/313 (9%)
Query: 95 SPSLAASSTLTDSSMLSPPQTTLHRNVSPGAP-QRPPSTGNAGGMLSTTDLTVPNGAGSS 153
+P L L L+PP R P Q P T ++ T++ + +G +
Sbjct: 730 TPPLQHHGQLAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGMNVTNIPLAPSSGQA 789
Query: 154 PVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKG 213
PV ++S + P S G + P P L NS P +P +
Sbjct: 790 PVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPA---LHQNSPSP-----VPSRT-- 839
Query: 214 MMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLT 273
P + Q+ ++ P+ TP P++PP + P T T
Sbjct: 840 ---PTPHHTPPSIGAQQPPATTIPAPVPTP------PAMPPGPQSQALHPPPRQTPTPPT 890
Query: 274 SADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAG--GQLSQGSNLSINTNQNIS 331
+ +Q P + + QQ Q + ++ V L + + +S
Sbjct: 891 TQLPQQVQ----PSLPAAPSADQPQQQPRSQQSTAASVPTPTAPLLPPQPATPLSQPAVS 946
Query: 332 IKSEPISPPRDRMTPSGFQ---QQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSL 388
I+ + +PP T Q ++Q Q+ + QP+P QP +++ S V+
Sbjct: 947 IEGQVSNPPSTSSTEVNSQAIAEKQPSQEVKMEAKMEVDQPEPADTQP-EDISESKVEDC 1005
Query: 389 SSSSSSYDGSDRE 401
S+ + E
Sbjct: 1006 KMESTETEERSTE 1018
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 52.4 bits (124), Expect = 8e-07
Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 350 QQQQQQQQQQQPPPPPQPQPQPPQPQPRQ-EMGRSPVDSLSSSSSSYDGS 398
+++ QQQQQQQPP PP P PQPPQPQP P+ +SS +S GS
Sbjct: 246 KKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQASVPGS 295
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 52.4 bits (124), Expect = 8e-07
Identities = 22/27 (81%), Positives = 22/27 (81%)
Query: 350 QQQQQQQQQQQPPPPPQPQPQPPQPQP 376
QQQQQQQQQQQPPPPP P P P PQP
Sbjct: 30 QQQQQQQQQQQPPPPPPPPPPPQLPQP 56
Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/49 (48%), Positives = 29/49 (59%)
Query: 331 SIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQE 379
S+KS + + QQQQQQQQQ PPPPP P PQ PQP P+ +
Sbjct: 13 SLKSFQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLPQPPPQAQ 61
Score = 35.0 bits (79), Expect = 0.13
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 336 PISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQP------QPPQPQPRQEMGRSPVDSLS 389
P PP P Q Q Q QPPPPP P P + P +P++E+ + D ++
Sbjct: 44 PPPPPPPPQLPQPPPQAQPLLPQPQPPPPPPPPPPGPAVAEEPLHRPKKELSATKKDRVN 103
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 52.4 bits (124), Expect = 8e-07
Identities = 81/389 (20%), Positives = 149/389 (38%), Gaps = 51/389 (13%)
Query: 7 QITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLP 66
++ + E + Q L + + P+ +PLS++ S ++ S F G P
Sbjct: 315 ELANTVPEDDIQDLFNEDFEEKKEPEFSQPATETPLSQESASVKSDPSHSPFAHVSMGSP 374
Query: 67 PQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAP 126
S S T A S + S+ +P+ A+S + + PQT + AP
Sbjct: 375 QARPSSSGPPFSTVSTATSLPSVASTPAAPNPASSPA---NCAVQSPQTPNQAHTPGQAP 431
Query: 127 QRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSP 186
RP GNG++ + A+ + G+ G V S
Sbjct: 432 PRP--------------------------GNGYLLNPAAVTVAGSAS----GPVAVPSSD 461
Query: 187 PPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQ-----PLA 241
P M +++ ++ + ++++ + Q+ S+Q + P +
Sbjct: 462 MSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQQQHSNQTSNWSPLGPPS 521
Query: 242 TPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQ-- 299
+P + T P ++Y P A+N + + LQ L ++ Q
Sbjct: 522 SPYGAAFTAEKPNSPMMY---PQAFNNQNPIVPPMANNLQKTTMNNYLPQNHMNMINQQP 578
Query: 300 HHLGQAALSSLVAGGQLSQGSNLSI-NTNQNISIKSEP--ISPPRDRMTP---SGFQQQQ 353
++LG +L+ L+ G+ + + N ++S + P +P ++ + P QQQQ
Sbjct: 579 NNLGTNSLNK--QHNILTYGNTKPLTHFNADLSQRMTPPVANPNKNPLMPYIQQQQQQQQ 636
Query: 354 QQQQQQQPPPPPQPQPQPPQPQPRQEMGR 382
QQQQQQQ PP PQ Q P+ ++ R
Sbjct: 637 QQQQQQQQQQPPPPQLQAPRAHLSEDQKR 665
Score = 32.3 bits (72), Expect = 0.87
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 334 SEPISPPRDRMTP--------------SGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQE 379
S P++ P M+P + QQ+QQQQQQQ Q Q Q Q Q
Sbjct: 452 SGPVAVPSSDMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQQQHSNQT 511
Query: 380 MGRSPVDSLSS 390
SP+ SS
Sbjct: 512 SNWSPLGPPSS 522
Score = 32.0 bits (71), Expect = 1.1
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 15/184 (8%)
Query: 221 EEELELNTQRISSSQATQPLATPVVSVTTPSLPPQ--GLVYSAMPTAYNTDYSLTSADLS 278
E L + + S + P A VS+ +P P G +S + TA T ++ +
Sbjct: 347 ETPLSQESASVKSDPSHSPFAH--VSMGSPQARPSSSGPPFSTVSTA--TSLPSVASTPA 402
Query: 279 ALQGFNSPGMLSLGQVSAWQQHHL-GQAALSSLVAGGQLSQGSNLSI--NTNQNISIKSE 335
A +SP ++ Q H GQA G L + +++ + + +++ S
Sbjct: 403 APNPASSPANCAVQSPQTPNQAHTPGQAPPRP--GNGYLLNPAAVTVAGSASGPVAVPSS 460
Query: 336 PISPPRDRMTPSGFQQQQ----QQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSS 391
+SP + QQQ+ QQ+QQQQ Q Q Q Q Q + S L
Sbjct: 461 DMSPAEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQQQHSNQTSNWSPLGPP 520
Query: 392 SSSY 395
SS Y
Sbjct: 521 SSPY 524
Score = 29.3 bits (64), Expect = 7.4
Identities = 50/243 (20%), Positives = 84/243 (34%), Gaps = 37/243 (15%)
Query: 166 PNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELE 225
PN +G N ++ + P N ++ R V P+ +MP + ++++ +
Sbjct: 578 PNNLGTNSLNKQHNILTYGNTKPLTHFNADLSQRMTP--PVANPNKNPLMPYIQQQQQQQ 635
Query: 226 LNTQRISSSQATQP--LATP----------VVSVTTPSLPPQGLVYSAMPTAYNTDYSL- 272
Q+ Q P L P ++ + + Q + Y+A+P+ + +
Sbjct: 636 QQQQQQQQQQQPPPPQLQAPRAHLSEDQKRLLLMKQKGVMNQPMAYAALPSHGQEQHPVG 695
Query: 273 TSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISI 332
+Q PG S G VS +S G L +I I
Sbjct: 696 LPRTTGPMQSSVPPG--SGGMVSG-----------ASPAGPGFLGSQPQAAIMKQMLIDQ 742
Query: 333 KSEPISPPRDRMTPSGFQQQQQQQQ---------QQQPPPPPQPQPQPPQPQPRQEMGRS 383
+++ I + + QQQQQQQQ P QPQ P Q + S
Sbjct: 743 RAQLIEQQKQQFLREQRQQQQQQQQILAEQQLQQSHLPRQHLQPQRNPYPVQQVNQFQGS 802
Query: 384 PVD 386
P D
Sbjct: 803 PQD 805
>gi|33286444 mastermind-like 2 [Homo sapiens]
Length = 1156
Score = 52.0 bits (123), Expect = 1e-06
Identities = 85/346 (24%), Positives = 120/346 (34%), Gaps = 73/346 (21%)
Query: 63 PGLPPQNFSMSVTVPVTS---PNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHR 119
P N ++S + P+ S A T G+S PS S ++ + H
Sbjct: 389 PAFSMANSALSTSSPIPSVPQSQAQPQTGSGASRALPSWQEVSHAQQLKQIAANRQQ-HA 447
Query: 120 NVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSP------------VGNGFVNSRASPN 167
+ Q P+ +A +P+ AG SP G + ++SP
Sbjct: 448 RMQQHQQQHQPTNWSA----------LPSSAGPSPGPFGQEKIPSPSFGQQTFSPQSSP- 496
Query: 168 LIGATGANSLGKVMPT---KSPPPPGGGNLG--MNSRKPDLRVVIPPSSKGMMPPLSEEE 222
+ G G + KVM K+ P GG+L M + DL S + P E
Sbjct: 497 MPGVAGGSGQSKVMANYMYKAGPSAQGGHLDVLMQQKPQDL------SRSFINNPHPAME 550
Query: 223 ELELNTQRI---SSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSA 279
+ NT+ + +S QA Q + + + S PSL T
Sbjct: 551 PRQGNTKPLFHFNSDQANQQMPSVLPSQNKPSL-----------------LHYTQQQQQQ 593
Query: 280 LQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISP 339
Q Q QQ Q SS+ A Q Q S++S Q +
Sbjct: 594 QQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQQQQQQQ----- 648
Query: 340 PRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPV 385
QQQQQQQQQQQ QP QP Q P Q + RSP+
Sbjct: 649 ----------QQQQQQQQQQQQQQQQQPSSQPAQSLPSQPLLRSPL 684
Score = 36.6 bits (83), Expect = 0.046
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 350 QQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDS 387
QQQQQQQQQQQ Q Q Q Q Q +Q+ +S + +
Sbjct: 589 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISA 626
Score = 35.8 bits (81), Expect = 0.079
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 350 QQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDRE 401
QQQQQQQQQQQ Q Q Q Q Q +Q+ SS ++
Sbjct: 591 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQSSISAQQQQ 642
Score = 34.7 bits (78), Expect = 0.18
Identities = 64/283 (22%), Positives = 106/283 (37%), Gaps = 34/283 (12%)
Query: 124 GAPQ-RPPSTGNAGGM----LSTTDL--TVPNGAGSSPVGNGFVNSRASPNLIGATGANS 176
G+PQ RPPS G A M LST+ +VP G+G SRA P+ + A
Sbjct: 378 GSPQLRPPSAGPAFSMANSALSTSSPIPSVPQSQAQPQTGSGA--SRALPSWQEVSHAQQ 435
Query: 177 LGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQA 236
L ++ N ++R + P++ +P + ++I S
Sbjct: 436 LKQI----------AANRQQHARMQQHQQQHQPTNWSALPSSAGPSPGPFGQEKIPSPSF 485
Query: 237 TQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSA 296
Q +P S P G+ + + +Y + A SA G L +
Sbjct: 486 GQQTFSP------QSSPMPGVAGGSGQSKVMANY-MYKAGPSAQGGH-------LDVLMQ 531
Query: 297 WQQHHLGQAALSSLVAGGQLSQGSNLSI-NTNQNISIKSEPISPPRDRMTPSGFQQQQQQ 355
+ L ++ +++ + QG+ + + N + + + P P QQQQ
Sbjct: 532 QKPQDLSRSFINNPHPAMEPRQGNTKPLFHFNSDQANQQMPSVLPSQNKPSLLHYTQQQQ 591
Query: 356 QQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGS 398
QQQQQ Q Q Q Q Q +Q+ + S+S+ S
Sbjct: 592 QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSSISAQQQQQQQS 634
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 51.2 bits (121), Expect = 2e-06
Identities = 76/330 (23%), Positives = 128/330 (38%), Gaps = 52/330 (15%)
Query: 81 PNALSYTNPGSSLVSPSLAASSTL-TDSSMLSPPQTTLHRNVSPGAPQRP-----PSTGN 134
P+A + +SL++P+ +AS L T + ++ PQT + SP P P PS G
Sbjct: 1560 PSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAP-SPAPPLAPLPVLAPSPG- 1617
Query: 135 AGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPP-PGGGN 193
A +L+++ VP A SS G ++ P +S ++P P P P +
Sbjct: 1618 AAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPAS 1677
Query: 194 LGMNSRKPDLRVVIPPSSKGMMPPLSE-EEELELNTQRISSSQATQPLATPVVSVTTPSL 252
+ P L + SS L + TQ +S + A+ + TP +++
Sbjct: 1678 TQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPG 1737
Query: 253 PPQGLVYS-----------AMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHH 301
PP G + A P ++LT A S+ +P + +S
Sbjct: 1738 PPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVPT 1797
Query: 302 LGQAALSSLVAG-----GQLSQGSNLSINTN--------------------QNISIKSEP 336
LG AA +L SQ S+L ++ + ++++S P
Sbjct: 1798 LGPAAAQTLALAPASTQSPASQASSLVVSASGAAPLPVTMVSRLPVSKDEPDTLTLRSGP 1857
Query: 337 ISPPRDRMTPSGFQQQQQQQQQQQPPPPPQ 366
SPP + G + ++QPPPPP+
Sbjct: 1858 PSPPSTATSFGG------PRPRRQPPPPPR 1881
Score = 40.4 bits (93), Expect = 0.003
Identities = 78/359 (21%), Positives = 126/359 (35%), Gaps = 55/359 (15%)
Query: 63 PGLPPQNFSMSVTVPVTSPNALSYTNPG--------------SSLVSPSLAASSTLTDSS 108
P P S +T+P+++P +S + P ++ PSLA S +S
Sbjct: 1444 PTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASPSAS 1503
Query: 109 MLSPPQTTLHRNVSPGAPQRP----PSTGNAGGMLST-----TDLTVPNGAGSSPVGNGF 159
L+ T S P P P++ + G+ ST + + VP A +SP +
Sbjct: 1504 ALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAP 1563
Query: 160 VNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLS 219
+ A +L+ + S P P L + P + + S G P L+
Sbjct: 1564 NPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAPPLAPLPVLAPSPGAAPVLA 1623
Query: 220 EEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGL-------VYSAMPTAYNTDYSL 272
+ + SS+ T + V TP L P V S +P+ +T
Sbjct: 1624 SSQT-PVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLA 1682
Query: 273 TSADLSALQGFNSPGM-LSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNIS 331
+ L+ G +SP LSLG + Q LS L+ S+L Q +S
Sbjct: 1683 LAPALAPTLGGSSPSQTLSLGTGNP--QGPFPTQTLS-------LTPASSLVPTPAQTLS 1733
Query: 332 IKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSS 390
+ P P ++ + P PP P P P + +P S +S
Sbjct: 1734 LAPGPPLGPTQTLSLA--------------PAPPLAPASPVGPAPAHTLTLAPASSSAS 1778
Score = 36.2 bits (82), Expect = 0.060
Identities = 77/359 (21%), Positives = 119/359 (33%), Gaps = 82/359 (22%)
Query: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRN 120
GPP +P V +P PN+ S P + S S PP TL
Sbjct: 1057 GPPLIPASRPPGPVLLPPLQPNSGSL---------PQVLPSPLGVLSGTSRPPTPTLSLK 1107
Query: 121 VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKV 180
+P AP R G LTVP G P A+ T A +
Sbjct: 1108 PTPPAPVRLSPAPPPGSSSLLKPLTVPPGYTFPP---------AAATTTSTTTATATTTA 1158
Query: 181 MPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPP---LSEEEELELNTQRISSSQAT 237
+P +P P R+++ P + +P +S + L + ++++ +
Sbjct: 1159 VPAPTPAPQ--------------RLILSPDMQARLPSGEVVSIGQLASLAQRPVANAGGS 1204
Query: 238 QPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLS---LGQV 294
+PL + QG +LT A + L P L + V
Sbjct: 1205 KPLTFQI----------QG-----------NKLTLTGAQVRQL-AVGQPRPLQRNVVHLV 1242
Query: 295 SAWQQHHL-GQAALSSLVAGGQLSQG------------SNLSINTNQNISIKSEPISPPR 341
SA QHHL Q A +L+ + G S T ++ + + + P
Sbjct: 1243 SAGGQHHLISQPAHVALIQAVAPTPGPTPVSVLPSSTPSTTPAPTGLSLPLAANQVPPTM 1302
Query: 342 DRMTPS-GFQQQQQQQQQQQPPPPPQPQPQPPQ--------PQPRQEMGRSPVDSLSSS 391
T +Q + P PP P P+PP P+P GR P +L ++
Sbjct: 1303 VNNTGVVKIVVRQAPRDGLTPVPPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTA 1361
Score = 33.5 bits (75), Expect = 0.39
Identities = 46/210 (21%), Positives = 85/210 (40%), Gaps = 36/210 (17%)
Query: 61 GPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSM----LSP-PQT 115
GPP P Q S++ P+ + + + ++P+ +++S L +S+ LSP P
Sbjct: 1737 GPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPAPVP 1796
Query: 116 TLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVN----SRASPNLI-- 169
TL + P ST + S+ V + +G++P+ V+ S+ P+ +
Sbjct: 1797 TLGPAAAQTLALAPASTQSPASQASS---LVVSASGAAPLPVTMVSRLPVSKDEPDTLTL 1853
Query: 170 ------GATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDL---------RVVIPPSSKGM 214
+ A S G P + PPPP ++S + R+ + G
Sbjct: 1854 RSGPPSPPSTATSFGGPRPRRQPPPPPRSPFYLDSLEEKRKRQRSERLERIFQLSEAHGA 1913
Query: 215 MPPLSEEEELELNTQRISSSQATQPLATPV 244
+ P+ E L+ T QP+A+P+
Sbjct: 1914 LAPVYGTEVLDFCT-------LPQPVASPI 1936
Score = 32.0 bits (71), Expect = 1.1
Identities = 86/357 (24%), Positives = 126/357 (35%), Gaps = 69/357 (19%)
Query: 63 PGLPPQNFSMSVTVPVTSPNALSYTNP-GSSLVSPSLAASSTLTDSSMLSPPQTTLHRNV 121
PG P + S T P T+P + P ++ V P++ ++ + + P+ L V
Sbjct: 1267 PGPTPVSVLPSST-PSTTPAPTGLSLPLAANQVPPTMVNNTGVVKIVVRQAPRDGL-TPV 1324
Query: 122 SPGAPQ-RPPSTG-----NAGGMLSTTDLTVPN-GAGSSPVGNG--------FVNSRASP 166
P AP RPPS+G N L+ L P G +P+ V+S +
Sbjct: 1325 PPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPTLGTARAPMPTPTLVRPLLKLVHSPSPE 1384
Query: 167 NLIGATGANSLGKVMPTKSP---PPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEE 223
A GA L P P P P + + + P + P S + PLS
Sbjct: 1385 VSASAPGAAPLTISSPLHVPSSLPGPASSPMPIPNSSP----LASPVSSTVSVPLSSSLP 1440
Query: 224 LELNTQRISSSQA--TQPLATPV-VSVTTPSL-----PPQGLVYSAMPTAYNTDYSLTSA 275
+ + T + + A T P++ P+ VS + P+L PP V A P + S S
Sbjct: 1441 ISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGASP 1500
Query: 276 DLSALQ-GFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKS 334
SAL G + LS Q H L A SS V G N ++
Sbjct: 1501 SASALTLGLATAPSLSSSQTPG---HPLLLAPTSSHVPG------------LNSTVAPAC 1545
Query: 335 EPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSS 391
P+ P + P P P P P Q +P S S +
Sbjct: 1546 SPVLVPASALA--------------------SPFPSAPNPAPAQASLLAPASSASQA 1582
Score = 29.6 bits (65), Expect = 5.6
Identities = 48/215 (22%), Positives = 76/215 (35%), Gaps = 36/215 (16%)
Query: 11 IMDERNRQTLRKKGLNGCESPDADDYFEHSPLSED------RFSKLNEDSDFIFKRGPPG 64
++D + L GL P E S ED R ++L +++ + R G
Sbjct: 3024 VLDRDSTSVLESCGLGRRRQPQGQGESEGSSSDEDGSRPLTRLARLRLEAEGMRGRKSGG 3083
Query: 65 LPPQNFSMSVTV-------PVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTL 117
SM V V + P L T P SL +P L S+ L S++ P +T
Sbjct: 3084 ------SMVVAVIQDDLDLADSGPGGLELTPPVVSL-TPKLR-STRLRPGSLVPPLETEK 3135
Query: 118 HRNVSPGAPQ------------RPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRAS 165
GAP +PPS G + ++ +G G+G R
Sbjct: 3136 LPRKRAGAPVGGSPGLAKRGRLQPPSPLGPEGSVEESEA---EASGEEEEGDGTPRRRPG 3192
Query: 166 PNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRK 200
P + T +++ + +PP G + RK
Sbjct: 3193 PRRLVGTTNQGDQRILRSSAPPSLAGPAVSHRGRK 3227
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 50.1 bits (118), Expect = 4e-06
Identities = 90/374 (24%), Positives = 130/374 (34%), Gaps = 37/374 (9%)
Query: 60 RGPPGLPPQNFSMSVTVPVTSPNALSY--TNPGSSLVSPSLAASS-----TLTDSSMLSP 112
R P G PQ+ S S T P SP + SY T+P S SPS + +S T S SP
Sbjct: 1603 RSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSP 1662
Query: 113 PQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT 172
+ + SP +P P++ + + T P+ + +SP + S + + +
Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722
Query: 173 GANSLGKVMPTKSPPPPGGGNLGMN--SRKPDLRVVIP---PSSKGMMPPLSEEEELELN 227
+ S P+ SP P N P+ P P+S P N
Sbjct: 1723 TSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPN 1782
Query: 228 TQRISSSQA-TQPLATPVVSVTTPSLP---PQGLVYSAMPTAY---NTDYSLTSADLSAL 280
S S + T P +P +PS P PQ Y+ +Y + YS TS +
Sbjct: 1783 YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPT 1842
Query: 281 QGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPP 340
SP S + + +S + S S T S S SP
Sbjct: 1843 SPSYSPSSPEYTPTSPKYSPTSPKYSPTS----PKYSPTSPTYSPTTPKYSPTSPTYSPT 1898
Query: 341 RDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMG------------RSPVDSL 388
TP+ + P P+ P P P G SP SL
Sbjct: 1899 SPVYTPT--SPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSL 1956
Query: 389 SSSSSSYDGSDRED 402
+S + S D SD E+
Sbjct: 1957 TSPAISPDDSDEEN 1970
Score = 40.4 bits (93), Expect = 0.003
Identities = 87/367 (23%), Positives = 120/367 (32%), Gaps = 52/367 (14%)
Query: 63 PGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVS 122
P + P N + SP+ S PG++ SPS A +D+S SP + + +
Sbjct: 1515 PAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA-----SDASGFSPGYSPAW-SPT 1568
Query: 123 PGAPQRP-------PSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGAN 175
PG+P P PS G G M + T P SP G + SP +
Sbjct: 1569 PGSPGSPGPSSPYIPSPG--GAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPT------SP 1620
Query: 176 SLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIP---PSSKGMMPPLSEEEELELNTQRIS 232
S P+ SP P + P P P+S P + S
Sbjct: 1621 SYSPTSPSYSPTSP-----NYSPTSPSYSPTSPSYSPTSPSYSP----------TSPSYS 1665
Query: 233 SSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAY---NTDYSLTSADLSALQGFNSPGML 289
+ + +P S T+PS P YS +Y + YS TS S SP
Sbjct: 1666 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725
Query: 290 SLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPS-- 347
S S + S S S T+ + S S SP TP+
Sbjct: 1726 SYSPTSP----SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSP 1781
Query: 348 GFQQQQQQQQQQQP---PPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYD-GSDREDP 403
+ P P P P P+ P+ S S SS SY S + P
Sbjct: 1782 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP 1841
Query: 404 RGDFHSP 410
+SP
Sbjct: 1842 TSPSYSP 1848
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 48.5 bits (114), Expect = 1e-05
Identities = 78/317 (24%), Positives = 117/317 (36%), Gaps = 43/317 (13%)
Query: 89 PGSSLVSPSLAASSTLTDSSMLSP-----PQTTLHRNVSPGAPQRPPSTGNAGGML---- 139
P L P A S + P PQT +P Q +TG + +L
Sbjct: 2520 PPPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQPVQAPAKAQPAITTGGSAAVLAGTI 2579
Query: 140 --STTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMN 197
S T ++P GA S GN VN+ A + A S+ K + SP PG
Sbjct: 2580 KTSVTGTSMPTGAVS---GNVIVNTIAG---VPAATFQSINKRLA--SPVAPGALTTPGG 2631
Query: 198 SRKPDLRVVIPPSSKGMMPPLSEEEELELNTQR----ISSSQATQPLATPVVSVTTP--S 251
S + PP P + + + + T + ++S A+ + T + V TP S
Sbjct: 2632 SAPAQVVHTQPPPRAVGSPATATPDLVSMATTQGVRAVTSVTASAVVTTNLTPVQTPARS 2691
Query: 252 LPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLV 311
L PQ + + T +T A L+ Q QQ Q
Sbjct: 2692 LVPQVSQATGVQLPGKT---ITPAHFQLLRQQQQQQQQQQQQQQQQQQQQQQQ------- 2741
Query: 312 AGGQLSQGSNLSINTNQNISIKSEPISPPR----DRMTPSGFQQQQQQQQQQQP-PPPPQ 366
Q Q + + Q I+ + SP + ++TP + Q+Q+ Q P PPPPQ
Sbjct: 2742 ---QQQQQQTTTTSQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQMPPQPPPPQ 2798
Query: 367 PQPQPPQPQPRQEMGRS 383
Q PPQP + ++ S
Sbjct: 2799 AQSAPPQPTAQVQVQTS 2815
Score = 40.0 bits (92), Expect = 0.004
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 328 QNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP 376
Q S+++E I+ + + QQ+ QQ PPPPQPQP PP QP
Sbjct: 2476 QVASLRAERIAKEKKALA----DQQKAQQPAVAQPPPPQPQPPPPPQQP 2520
Score = 38.5 bits (88), Expect = 0.012
Identities = 92/376 (24%), Positives = 133/376 (35%), Gaps = 60/376 (15%)
Query: 34 DDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSMSVTVP----VTSPNALSYTNP 89
D+ H+ L F + + KR PP P + P V + + ++Y P
Sbjct: 2415 DENATHTQLYTSHFDLMKMTAG---KRSPPIKPLLGMNPFQKNPKHASVLAESGINYDKP 2471
Query: 90 GSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVS---PGAPQRPPSTGNAGGMLSTTDLTV 146
+ SL A + L+ Q V+ P PQ PP L
Sbjct: 2472 LPPIQVASLRAERIAKEKKALADQQKAQQPAVAQPPPPQPQPPPPPQQP-----PPPLPQ 2526
Query: 147 PNGAGSSP-VGNGFVNSRASPNLIGATGANSLGKVMPTKSPPP-PGGGNLGMNSRKPDLR 204
P AGS P G V + P P K+ P GG+ + L
Sbjct: 2527 PQAAGSQPPAGPPAVQPQPQPQ----PQTQPQPVQAPAKAQPAITTGGSAAV------LA 2576
Query: 205 VVIPPSSKGM-MPPLSEEEELELNT----QRISSSQATQPLATPVV--SVTTP--SLPPQ 255
I S G MP + + +NT + + LA+PV ++TTP S P Q
Sbjct: 2577 GTIKTSVTGTSMPTGAVSGNVIVNTIAGVPAATFQSINKRLASPVAPGALTTPGGSAPAQ 2636
Query: 256 GLVYSAMPTAYNTDYSLTS--ADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAG 313
+ P A + + T ++ QG + ++ V + Q SLV
Sbjct: 2637 VVHTQPPPRAVGSPATATPDLVSMATTQGVRAVTSVTASAVVTTNLTPV-QTPARSLVP- 2694
Query: 314 GQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQ----QQQQQQQQQQPPPPPQPQP 369
Q+SQ + + + P +TP+ FQ QQQQQQQQQQ Q Q
Sbjct: 2695 -QVSQATGVQL---------------PGKTITPAHFQLLRQQQQQQQQQQQQQQQQQQQQ 2738
Query: 370 QPPQPQPRQEMGRSPV 385
Q Q Q +Q S V
Sbjct: 2739 QQQQQQQQQTTTTSQV 2754
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 48.1 bits (113), Expect = 2e-05
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 317 SQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP 376
+ G++ + +TN N + P QQQQQQQQ QQ P QPQPQP Q QP
Sbjct: 72 NNGTSTATSTNNNAKRATANNQQP---------QQQQQQQQPQQQQPQQQPQPQPQQQQP 122
Query: 377 RQE 379
+Q+
Sbjct: 123 QQQ 125
Score = 41.6 bits (96), Expect = 0.001
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 351 QQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSL 388
QQ QQQQQQQ P QPQ QP QPQP+Q+ + +L
Sbjct: 93 QQPQQQQQQQQPQQQQPQQQP-QPQPQQQQPQQQPQAL 129
Score = 33.9 bits (76), Expect = 0.30
Identities = 64/282 (22%), Positives = 93/282 (32%), Gaps = 101/282 (35%)
Query: 139 LSTTDLTVPNGAGSSPVGNGFVN-----SRASPNL--IGATGANSLGKVMPTKSPPPPGG 191
L ++ +PN A S G G N +P++ +G T A G P P
Sbjct: 1300 LPPSNSALPNQALGSIAGLGMQNLNSVRQNGNPSMFGVGNTAAQPRGMQQPPAQP----- 1354
Query: 192 GNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPS 251
++S +P+LR +PP PL +P V V+
Sbjct: 1355 ----LSSSQPNLRAQVPP-----------------------------PLLSPQVPVSL-- 1379
Query: 252 LPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLV 311
Y+ + L+ L G ML+ LS L
Sbjct: 1380 ----------------LKYAPNNGGLNPLFGPQQVAMLN---------------QLSQLN 1408
Query: 312 AGGQLSQGSNLSINTNQNISIKSEPIS--PPRDRM-TPSGFQQQQQQQ----------QQ 358
Q+SQ L + S +S P P +D+ P QQQ QQ +Q
Sbjct: 1409 QLSQISQLQRLLAQQQRAQSQRSVPSGNRPQQDQQGRPLSVQQQMMQQSRQLDPNLLVKQ 1468
Query: 359 QQPPPPPQPQPQP----------PQPQPRQEMGRSPVDSLSS 390
Q PP QP QP P P + G SP+++ S+
Sbjct: 1469 QTPPSQQQPLHQPAMKSFLDNVMPHTTPELQKGPSPINAFSN 1510
>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
Length = 476
Score = 48.1 bits (113), Expect = 2e-05
Identities = 66/258 (25%), Positives = 92/258 (35%), Gaps = 58/258 (22%)
Query: 155 VGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPP---GGGNLGMNSRKPDLRVVIPPS- 210
VG+G + P G + PT+ PP P G G LG N+ L V PP+
Sbjct: 149 VGHGVKHGNNQPARTGTLSRTN----PPTQKPPSPPMSGRGTLGRNTPYKTLEPVKPPTV 204
Query: 211 ---------------SKGMMPPLSEEEELELNTQRISSSQ---ATQPLATPVVSVTTPSL 252
S G L++ + S S+ + + P ++V TPS
Sbjct: 205 PNDYMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIP-IAVPTPSP 263
Query: 253 PPQGLVY--SAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSL 310
P G SA + Y T S S +S G V+A Q +
Sbjct: 264 PTIGPAAPGSAPGSQYGTMTRQISRHNSTTSSTSSGGYRRTPSVTA-------QFSAQPH 316
Query: 311 VAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTP----SGFQQQQQQQQQQQPPPPPQ 366
V GG L +++SI P PP ++TP +GF + Q+ P PPP
Sbjct: 317 VNGGPLYSQNSISI----------APPPPPMPQLTPQIPLTGFVARVQENIADSPTPPPP 366
Query: 367 PQP--------QPPQPQP 376
P P PP P P
Sbjct: 367 PPPDDIPMFDDSPPPPPP 384
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 48.1 bits (113), Expect = 2e-05
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 262 MPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQG-- 319
+PTAY + L L + PG + +L +++ + G + G
Sbjct: 3111 LPTAYPALQGIPPVLLPGLNSPSLPGFTPSNTALTSPKPNLMGLPSTTVPSPGLPTSGLP 3170
Query: 320 -----SNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQP-PQ 373
++LS T ++ P PP+ QQQQQQ Q QQPPPPP QP P PQ
Sbjct: 3171 NKPSSASLSSPTPAQATMAMGPQQPPQQ-------QQQQQQPQVQQPPPPPAAQPPPTPQ 3223
Query: 374 PQPRQEMGRSPVDS 387
+Q+ R DS
Sbjct: 3224 LPLQQQQQRKDKDS 3237
Score = 36.6 bits (83), Expect = 0.046
Identities = 69/303 (22%), Positives = 100/303 (33%), Gaps = 76/303 (25%)
Query: 144 LTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTK-----------SPPPPGGG 192
L P+ G +P + + PNL+G +PT S P P
Sbjct: 3129 LNSPSLPGFTPSNTALTSPK--PNLMGLPSTTVPSPGLPTSGLPNKPSSASLSSPTPAQA 3186
Query: 193 NLGMNSRKPDLR--------VVIPPSSKGMMPPLSEEEELELNTQRISSSQAT------- 237
+ M ++P + V PP PP + + L+ QR
Sbjct: 3187 TMAMGPQQPPQQQQQQQQPQVQQPPPPPAAQPPPTPQLPLQQQQQRKDKDSEKVKEKEKA 3246
Query: 238 -----QPLATP--------VVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSAL---- 280
+PL P + T S P + Y+ P + ++D +AL
Sbjct: 3247 HKGKGEPLPVPKKEKGEAPTATAATISAPLPTMEYAVDPAQLQALQAALTSDPTALLTSQ 3306
Query: 281 ------QGFNS------PGMLSLGQVS---AWQQHHLGQAALSSLVAGGQLSQGSNLSIN 325
GF+ PG L G + + ALS + G LS GS L
Sbjct: 3307 FLPYFVPGFSPYYAPQIPGALQSGYLQPMYGMEGLFPYSPALSQALMG--LSPGSLLQQY 3364
Query: 326 TNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ---------PPPPPQPQPQPPQPQP 376
S++ E I + R QQQQQQ+ QQQ PP P P P + P
Sbjct: 3365 QQYQQSLQ-EAIQQQQQRQ----LQQQQQQKVQQQQPKASQTPVPPGAPSPDKDPAKESP 3419
Query: 377 RQE 379
+ E
Sbjct: 3420 KPE 3422
Score = 32.7 bits (73), Expect = 0.67
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 329 NISIKSEPISPPRDRMTP--SGFQQQQQQQQQQQPPPPPQPQPQ 370
NI+ SEP R ++ + QQQQQQQQQQQ Q Q Q
Sbjct: 1700 NIASPSEPKEANRKKLADMIASRQQQQQQQQQQQQQQQQQQQAQ 1743
Score = 32.3 bits (72), Expect = 0.87
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 357 QQQQPPPPPQPQPQPPQPQPRQEMGRSP 384
Q +PPPPP P P PP P + +P
Sbjct: 2035 QTPEPPPPPPPPPPPPLPAAPPQPASTP 2062
Score = 31.6 bits (70), Expect = 1.5
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 28/170 (16%)
Query: 220 EEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSA-MPTAYNTDYSL---TSA 275
E+EE + ++Q S A + L S +TP +P Q YSA P+A NT S +A
Sbjct: 2355 EDEEGQDDSQNEDSMDAMEILTPTSSSCSTP-MPSQA--YSAPAPSANNTASSAFLQLTA 2411
Query: 276 DLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSE 335
+ L FNS + A + +L++ + N Q + +
Sbjct: 2412 EAEELATFNS-------KTEAGDEKP-------------KLAEAPSAQPNQTQEKQGQPK 2451
Query: 336 PISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQ-PRQEMGRSP 384
P +++ QQ+ Q P PQP PQ P PQ P + SP
Sbjct: 2452 PELQQQEQPEQKTNTPQQKLPQLVSLPSLPQPPPQAPPPQCPLPQSSPSP 2501
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 47.8 bits (112), Expect = 2e-05
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 10/54 (18%)
Query: 329 NISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPP-----QPQPR 377
++ ++S+P P PS QQQ QQQPPPPP PQPQPP QP PR
Sbjct: 947 SVKVQSQPPPPLPPPPHPS-----VQQQLQQQPPPPPPPQPQPPPQQQHQPPPR 995
Score = 46.6 bits (109), Expect = 4e-05
Identities = 65/274 (23%), Positives = 101/274 (36%), Gaps = 52/274 (18%)
Query: 183 TKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRISSSQATQPLAT 242
+K+ PP NS ++ P K PP E EE E + +S + Q
Sbjct: 563 SKAKEPPPKKTKKNNSSNSNVSKKEPAPMKSKPPPTYESEE-EDKCKPMSYEEKRQ---- 617
Query: 243 PVVSVTTPSLPPQGL------VYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSA 296
+S+ LP + L + S P+ N++ D L+ ++ L S
Sbjct: 618 --LSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKP-STLRELERYVTSC 674
Query: 297 WQQHHLGQAALSSLVAGGQLSQG--SNLSINTNQNISIKSEPIS------------PPRD 342
++ QA ++AG +G S+ S +++++ S SE P R+
Sbjct: 675 LRKKRKPQAEKVDVIAGSSKMKGFSSSESESSSESSSSDSEDSETEMAPKSKKKGHPGRE 734
Query: 343 RMTPSGFQQQQQQQ-------------QQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLS 389
+ QQ QQ QQ PPPPPQ Q QPP P P M + ++
Sbjct: 735 QKKHHHHHHQQMQQAPAPVPQQPPPPPQQPPPPPPPQQQQQPPPPPPPPSMPQQAAPAMK 794
Query: 390 SSSSSYDGSDRE-----------DPRGDFHSPIV 412
SS + + DP G F PI+
Sbjct: 795 SSPPPFIATQVPVLEPQLPGSVFDPIGHFTQPIL 828
Score = 38.5 bits (88), Expect = 0.012
Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 11/84 (13%)
Query: 339 PPRD-RMTPSGFQQQQQQ----QQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSS 393
PPR + P F QQ Q QQ P PPP QP PPQP Q++ + S
Sbjct: 993 PPRPVHLQPMQFSTHIQQPPPPQGQQPPHPPPGQQPPPPQPAKPQQVIQHHHSPRHHKSD 1052
Query: 394 SYD-GSDREDPRGDFHSPIVLGRP 416
Y G RE P SP+++ P
Sbjct: 1053 PYSTGHLREAP-----SPLMIHSP 1071
Score = 35.8 bits (81), Expect = 0.079
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 335 EPISPPRDRMTPSGFQQQQQQQQQQQPP-----------PPPQPQPQPPQPQPRQEMGRS 383
E PP +T Q QQ Q+ QPP PP P P PP P +Q++ +
Sbjct: 914 EDEEPPAPPLTSMQMQLYLQQLQKVQPPTPLLPSVKVQSQPPPPLPPPPHPSVQQQLQQQ 973
Query: 384 P 384
P
Sbjct: 974 P 974
Score = 34.3 bits (77), Expect = 0.23
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 26/76 (34%)
Query: 335 EPISPPRDRMTPSGFQQQQQQQQ-----------QQQPPPPPQPQPQ------------- 370
EP +PP M + QQ Q+ Q Q QPPPP P P
Sbjct: 917 EPPAPPLTSMQMQLYLQQLQKVQPPTPLLPSVKVQSQPPPPLPPPPHPSVQQQLQQQPPP 976
Query: 371 --PPQPQPRQEMGRSP 384
PPQPQP + P
Sbjct: 977 PPPPQPQPPPQQQHQP 992
Score = 33.9 bits (76), Expect = 0.30
Identities = 16/25 (64%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 355 QQQQQQPPPPPQPQPQP-PQPQPRQ 378
Q Q PP PPQPQP P P PQP Q
Sbjct: 245 QPLQTPPPVPPQPQPPPAPAPQPVQ 269
Score = 31.2 bits (69), Expect = 1.9
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 338 SPPRDRMTPSGFQQQQQQQQQQQP-----PPPP--QPQPQPPQPQPRQEMGRSPVDS 387
+PP + TP F Q P PP P P P PPQPQP PV S
Sbjct: 214 NPPPVQATPHPFPAVTPDLIVQTPVMTVVPPQPLQTPPPVPPQPQPPPAPAPQPVQS 270
Score = 31.2 bits (69), Expect = 1.9
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 357 QQQQPPPPPQPQPQ-PPQPQPRQEMGRSPV 385
Q Q PPP PQPQ PP P P+ P+
Sbjct: 245 QPLQTPPPVPPQPQPPPAPAPQPVQSHPPI 274
>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
Length = 481
Score = 47.8 bits (112), Expect = 2e-05
Identities = 73/294 (24%), Positives = 105/294 (35%), Gaps = 61/294 (20%)
Query: 118 HRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSL 177
H+ ++P +RP + D TV + G G ++ ++ N TG S
Sbjct: 122 HKIIAPANMERPVRY-----IRKPIDYTVLDDVGH---GVKWLKAKHGNNQPARTGTLSR 173
Query: 178 GKVMPTKSPPPP--GGGNLGMNSRKPDLRVVIPPS----------------SKGMMPPLS 219
K P PP G G LG N+ L V PP+ S G L+
Sbjct: 174 TNPPTQKPPSPPMSGRGTLGRNTPYKTLEPVKPPTVPNDYMTSPARLGSQHSPGRTASLN 233
Query: 220 EEEELELNTQRISSSQ---ATQPLATPVVSVTTPSLPPQGLVY--SAMPTAYNTDYSLTS 274
+ + S S+ + + P ++V TPS P G SA + Y T S
Sbjct: 234 QRPRTHSGSSGGSGSRENSGSSSIGIP-IAVPTPSPPTIGPAAPGSAPGSQYGTMTRQIS 292
Query: 275 ADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKS 334
S +S G V+A Q + V GG L +++SI
Sbjct: 293 RHNSTTSSTSSGGYRRTPSVTA-------QFSAQPHVNGGPLYSQNSISI---------- 335
Query: 335 EPISPPRDRMTP----SGFQQQQQQQQQQQPPPPPQPQP--------QPPQPQP 376
P PP ++TP +GF + Q+ P PPP P P PP P P
Sbjct: 336 APPPPPMPQLTPQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPP 389
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 47.8 bits (112), Expect = 2e-05
Identities = 42/114 (36%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 263 PTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNL 322
P++Y++ + S+ Q S G LS S Q + ++S+ G S
Sbjct: 1566 PSSYDSTMGGSICGNSSSQSSCSYGGLSSSS-SLTQSSCVVTQQMASM--GSSCSMMQQS 1622
Query: 323 SINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP 376
S+ N SIKS P S +R PS QQQQ PPPP QPQP PPQPQP
Sbjct: 1623 SVQPAANCSIKS-PQSCVVER-PPSN------QQQQPPPPPPQQPQPPPPQPQP 1668
Score = 46.6 bits (109), Expect = 4e-05
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 308 SSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQP 367
S +V S GS+ S+ ++ +P + + S ++ QQQQPPPPP
Sbjct: 1602 SCVVTQQMASMGSSCSMMQQSSV----QPAANCSIKSPQSCVVERPPSNQQQQPPPPPPQ 1657
Query: 368 QPQPPQPQPR 377
QPQPP PQP+
Sbjct: 1658 QPQPPPPQPQ 1667
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 47.8 bits (112), Expect = 2e-05
Identities = 42/114 (36%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 263 PTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNL 322
P++Y++ + S+ Q S G LS S Q + ++S+ G S
Sbjct: 1566 PSSYDSTMGGSICGNSSSQSSCSYGGLSSSS-SLTQSSCVVTQQMASM--GSSCSMMQQS 1622
Query: 323 SINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP 376
S+ N SIKS P S +R PS QQQQ PPPP QPQP PPQPQP
Sbjct: 1623 SVQPAANCSIKS-PQSCVVER-PPSN------QQQQPPPPPPQQPQPPPPQPQP 1668
Score = 46.6 bits (109), Expect = 4e-05
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 308 SSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQP 367
S +V S GS+ S+ ++ +P + + S ++ QQQQPPPPP
Sbjct: 1602 SCVVTQQMASMGSSCSMMQQSSV----QPAANCSIKSPQSCVVERPPSNQQQQPPPPPPQ 1657
Query: 368 QPQPPQPQPR 377
QPQPP PQP+
Sbjct: 1658 QPQPPPPQPQ 1667
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,293,134
Number of Sequences: 37866
Number of extensions: 1500049
Number of successful extensions: 28128
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 714
Number of HSP's that attempted gapping in prelim test: 13434
Number of HSP's gapped (non-prelim): 8416
length of query: 437
length of database: 18,247,518
effective HSP length: 105
effective length of query: 332
effective length of database: 14,271,588
effective search space: 4738167216
effective search space used: 4738167216
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.