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Search of human proteins with 194306631
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194306631 poly(rC) binding protein 3 isoform 1 [Homo
sapiens]
(371 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194306631 poly(rC) binding protein 3 isoform 1 [Homo sapiens] 736 0.0
gi|194306633 poly(rC) binding protein 3 isoform 2 [Homo sapiens] 664 0.0
gi|148833484 poly(rC) binding protein 2 isoform c [Homo sapiens] 503 e-143
gi|193083114 poly(rC) binding protein 2 isoform g [Homo sapiens] 498 e-141
gi|193083112 poly(rC) binding protein 2 isoform f [Homo sapiens] 498 e-141
gi|14141166 poly(rC) binding protein 2 isoform b [Homo sapiens] 487 e-138
gi|193083110 poly(rC) binding protein 2 isoform e [Homo sapiens] 485 e-137
gi|14141168 poly(rC) binding protein 2 isoform a [Homo sapiens] 481 e-136
gi|193083108 poly(rC) binding protein 2 isoform d [Homo sapiens] 479 e-135
gi|222352151 poly(rC) binding protein 1 [Homo sapiens] 423 e-118
gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens] 379 e-105
gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens] 379 e-105
gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens] 293 2e-79
gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a ... 106 4e-23
gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b ... 106 4e-23
gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a ... 106 4e-23
gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens] 94 3e-19
gi|100816392 far upstream element (FUSE) binding protein 3 [Homo... 88 1e-17
gi|64085377 insulin-like growth factor 2 mRNA binding protein 2 ... 86 4e-17
gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo ... 85 9e-17
gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo ... 85 9e-17
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 85 9e-17
gi|17402900 far upstream element-binding protein [Homo sapiens] 82 8e-16
gi|56118219 insulin-like growth factor 2 mRNA binding protein 2 ... 77 2e-14
gi|30795212 insulin-like growth factor 2 mRNA binding protein 3 ... 76 4e-14
gi|56237027 insulin-like growth factor 2 mRNA binding protein 1 ... 74 2e-13
gi|238624257 insulin-like growth factor 2 mRNA binding protein 1... 72 6e-13
gi|145312259 tudor and KH domain containing isoform a [Homo sapi... 58 2e-08
gi|145312270 tudor and KH domain containing isoform a [Homo sapi... 58 2e-08
gi|145312256 tudor and KH domain containing isoform a [Homo sapi... 58 2e-08
>gi|194306631 poly(rC) binding protein 3 isoform 1 [Homo sapiens]
Length = 371
Score = 736 bits (1901), Expect = 0.0
Identities = 371/371 (100%), Positives = 371/371 (100%)
Query: 1 MGEGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSI 60
MGEGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSI
Sbjct: 1 MGEGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSI 60
Query: 61 IGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMS 120
IGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMS
Sbjct: 61 IGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMS 120
Query: 121 NSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
NSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI
Sbjct: 121 NSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
Query: 181 SGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQ 240
SGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQ
Sbjct: 181 SGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQ 240
Query: 241 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTI 300
LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTI
Sbjct: 241 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTI 300
Query: 301 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINAR 360
PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINAR
Sbjct: 301 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINAR 360
Query: 361 LTSEVTGMGTL 371
LTSEVTGMGTL
Sbjct: 361 LTSEVTGMGTL 371
>gi|194306633 poly(rC) binding protein 3 isoform 2 [Homo sapiens]
Length = 345
Score = 664 bits (1713), Expect = 0.0
Identities = 345/371 (92%), Positives = 345/371 (92%), Gaps = 26/371 (7%)
Query: 1 MGEGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSI 60
MGEGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSI
Sbjct: 1 MGEGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSI 60
Query: 61 IGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMS 120
IGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMS
Sbjct: 61 IGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMS 120
Query: 121 NSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
NSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI
Sbjct: 121 NSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
Query: 181 SGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQ 240
SGTPDAIIQCVKQICVVMLE AYTIQGQYAIPHPD
Sbjct: 181 SGTPDAIIQCVKQICVVMLE-------------------------AYTIQGQYAIPHPD- 214
Query: 241 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTI 300
LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTI
Sbjct: 215 LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTI 274
Query: 301 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINAR 360
PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINAR
Sbjct: 275 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINAR 334
Query: 361 LTSEVTGMGTL 371
LTSEVTGMGTL
Sbjct: 335 LTSEVTGMGTL 345
>gi|148833484 poly(rC) binding protein 2 isoform c [Homo sapiens]
Length = 331
Score = 503 bits (1296), Expect = e-143
Identities = 263/338 (77%), Positives = 293/338 (86%), Gaps = 8/338 (2%)
Query: 33 MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVT 92
M++ V EGGLNVTLTIRLLMHGKEVGSIIGKKGE+VKKMREESGARINISEGNCPERI+T
Sbjct: 1 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT 60
Query: 93 ITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKI 152
+ GPT+AIFKAFAMI K EEDI +SM+NS A S+PPVTLRLVVPASQCGSLIGKGG KI
Sbjct: 61 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI 120
Query: 153 KEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRP 212
KEIRESTGAQVQVAGDMLPNSTERA+TI+G P +II+CVKQICVVMLESPPKG TIPYRP
Sbjct: 121 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP 180
Query: 213 KPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLH 272
KP+S+PVIFAGGQAYTIQGQYAIP PD LTKLHQLAMQQ+ F P+ N F G +
Sbjct: 181 KPSSSPVIFAGGQAYTIQGQYAIPQPD-LTKLHQLAMQQSHF-PMTHGNTGFSG----IE 234
Query: 273 SSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA 332
SS + + G +GLDAS ++HELTIPNDLIGCIIGRQG KINEIRQMSGAQIKIAN
Sbjct: 235 SS--SPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP 292
Query: 333 TEGSSERQITITGTPANISLAQYLINARLTSEVTGMGT 370
EGS++RQ+TITG+ A+ISLAQYLIN RL+SE GMG+
Sbjct: 293 VEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 330
>gi|193083114 poly(rC) binding protein 2 isoform g [Homo sapiens]
Length = 318
Score = 498 bits (1281), Expect = e-141
Identities = 261/339 (76%), Positives = 287/339 (84%), Gaps = 23/339 (6%)
Query: 33 MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVT 92
M++ V EGGLNVTLTIRLLMHGKEVGSIIGKKGE+VKKMREESGARINISEGNCPERI+T
Sbjct: 1 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT 60
Query: 93 ITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKI 152
+ GPT+AIFKAFAMI K EEDI +SM+NS A S+PPVTLRLVVPASQCGSLIGKGG KI
Sbjct: 61 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI 120
Query: 153 KEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRP 212
KEIRESTGAQVQVAGDMLPNSTERA+TI+G P +II+CVKQICVVMLESPPKG TIPYRP
Sbjct: 121 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP 180
Query: 213 KPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPL-GQTNPAFPGEKLPL 271
KP+S+PVIFAGGQAYTIQGQYAIP PD LTKLHQLAMQQ+ FP G T
Sbjct: 181 KPSSSPVIFAGGQAYTIQGQYAIPQPD-LTKLHQLAMQQSHFPMTHGNT----------- 228
Query: 272 HSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN 331
G S+GLDAS ++HELTIPNDLIGCIIGRQG KINEIRQMSGAQIKIAN
Sbjct: 229 ----------GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN 278
Query: 332 ATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGT 370
EGS++RQ+TITG+ A+ISLAQYLIN RL+SE GMG+
Sbjct: 279 PVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 317
>gi|193083112 poly(rC) binding protein 2 isoform f [Homo sapiens]
Length = 335
Score = 498 bits (1281), Expect = e-141
Identities = 263/342 (76%), Positives = 293/342 (85%), Gaps = 12/342 (3%)
Query: 33 MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVT 92
M++ V EGGLNVTLTIRLLMHGKEVGSIIGKKGE+VKKMREESGARINISEGNCPERI+T
Sbjct: 1 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT 60
Query: 93 ITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKI 152
+ GPT+AIFKAFAMI K EEDI +SM+NS A S+PPVTLRLVVPASQCGSLIGKGG KI
Sbjct: 61 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI 120
Query: 153 KEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLE----SPPKGATI 208
KEIRESTGAQVQVAGDMLPNSTERA+TI+G P +II+CVKQICVVMLE SPPKG TI
Sbjct: 121 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI 180
Query: 209 PYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEK 268
PYRPKP+S+PVIFAGGQAYTIQGQYAIP PD LTKLHQLAMQQ+ F P+ N F G
Sbjct: 181 PYRPKPSSSPVIFAGGQAYTIQGQYAIPQPD-LTKLHQLAMQQSHF-PMTHGNTGFSG-- 236
Query: 269 LPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIK 328
+ SS + + G +GLDAS ++HELTIPNDLIGCIIGRQG KINEIRQMSGAQIK
Sbjct: 237 --IESS--SPEVKGYWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIK 292
Query: 329 IANATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGT 370
IAN EGS++RQ+TITG+ A+ISLAQYLIN RL+SE GMG+
Sbjct: 293 IANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS 334
>gi|14141166 poly(rC) binding protein 2 isoform b [Homo sapiens]
Length = 362
Score = 487 bits (1254), Expect = e-138
Identities = 263/369 (71%), Positives = 293/369 (79%), Gaps = 39/369 (10%)
Query: 33 MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVT 92
M++ V EGGLNVTLTIRLLMHGKEVGSIIGKKGE+VKKMREESGARINISEGNCPERI+T
Sbjct: 1 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT 60
Query: 93 ITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKI 152
+ GPT+AIFKAFAMI K EEDI +SM+NS A S+PPVTLRLVVPASQCGSLIGKGG KI
Sbjct: 61 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI 120
Query: 153 KEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRP 212
KEIRESTGAQVQVAGDMLPNSTERA+TI+G P +II+CVKQICVVMLESPPKG TIPYRP
Sbjct: 121 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP 180
Query: 213 KPASTPVIFAGGQ-------------------------------AYTIQGQYAIPHPDQL 241
KP+S+PVIFAGGQ AYTIQGQYAIP PD L
Sbjct: 181 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD-L 239
Query: 242 TKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIP 301
TKLHQLAMQQ+ F P+ N F G + SS + + G +GLDAS ++HELTIP
Sbjct: 240 TKLHQLAMQQSHF-PMTHGNTGFSG----IESS--SPEVKGYWAGLDASAQTTSHELTIP 292
Query: 302 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
NDLIGCIIGRQG KINEIRQMSGAQIKIAN EGS++RQ+TITG+ A+ISLAQYLIN RL
Sbjct: 293 NDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRL 352
Query: 362 TSEVTGMGT 370
+SE GMG+
Sbjct: 353 SSETGGMGS 361
>gi|193083110 poly(rC) binding protein 2 isoform e [Homo sapiens]
Length = 361
Score = 485 bits (1248), Expect = e-137
Identities = 263/369 (71%), Positives = 291/369 (78%), Gaps = 40/369 (10%)
Query: 33 MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVT 92
M++ V EGGLNVTLTIRLLMHGKEVGSIIGKKGE+VKKMREESGARINISEGNCPERI+T
Sbjct: 1 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT 60
Query: 93 ITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKI 152
+ GPT+AIFKAFAMI K EEDI +SM+NS A S+PPVTLRLVVPASQCGSLIGKGG KI
Sbjct: 61 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI 120
Query: 153 KEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRP 212
KEIRESTGAQVQVAGDMLPNSTERA+TI+G P +II+CVKQICVVMLESPPKG TIPYRP
Sbjct: 121 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP 180
Query: 213 KPASTPVIFAGGQ-------------------------------AYTIQGQYAIPHPDQL 241
KP+S+PVIFAGGQ AYTIQGQYAIP PD L
Sbjct: 181 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD-L 239
Query: 242 TKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIP 301
TKLHQLAMQQ+ F P+ N F G + SS E + GLDAS ++HELTIP
Sbjct: 240 TKLHQLAMQQSHF-PMTHGNTGFSGIE---SSSPEVKGYW----GLDASAQTTSHELTIP 291
Query: 302 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL 361
NDLIGCIIGRQG KINEIRQMSGAQIKIAN EGS++RQ+TITG+ A+ISLAQYLIN RL
Sbjct: 292 NDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRL 351
Query: 362 TSEVTGMGT 370
+SE GMG+
Sbjct: 352 SSETGGMGS 360
>gi|14141168 poly(rC) binding protein 2 isoform a [Homo sapiens]
Length = 366
Score = 481 bits (1239), Expect = e-136
Identities = 263/373 (70%), Positives = 293/373 (78%), Gaps = 43/373 (11%)
Query: 33 MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVT 92
M++ V EGGLNVTLTIRLLMHGKEVGSIIGKKGE+VKKMREESGARINISEGNCPERI+T
Sbjct: 1 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT 60
Query: 93 ITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKI 152
+ GPT+AIFKAFAMI K EEDI +SM+NS A S+PPVTLRLVVPASQCGSLIGKGG KI
Sbjct: 61 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI 120
Query: 153 KEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLE----SPPKGATI 208
KEIRESTGAQVQVAGDMLPNSTERA+TI+G P +II+CVKQICVVMLE SPPKG TI
Sbjct: 121 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI 180
Query: 209 PYRPKPASTPVIFAGGQ-------------------------------AYTIQGQYAIPH 237
PYRPKP+S+PVIFAGGQ AYTIQGQYAIP
Sbjct: 181 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ 240
Query: 238 PDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE 297
PD LTKLHQLAMQQ+ F P+ N F G + SS + + G +GLDAS ++HE
Sbjct: 241 PD-LTKLHQLAMQQSHF-PMTHGNTGFSG----IESS--SPEVKGYWAGLDASAQTTSHE 292
Query: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 357
LTIPNDLIGCIIGRQG KINEIRQMSGAQIKIAN EGS++RQ+TITG+ A+ISLAQYLI
Sbjct: 293 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 352
Query: 358 NARLTSEVTGMGT 370
N RL+SE GMG+
Sbjct: 353 NVRLSSETGGMGS 365
>gi|193083108 poly(rC) binding protein 2 isoform d [Homo sapiens]
Length = 365
Score = 479 bits (1233), Expect = e-135
Identities = 263/373 (70%), Positives = 291/373 (78%), Gaps = 44/373 (11%)
Query: 33 MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVT 92
M++ V EGGLNVTLTIRLLMHGKEVGSIIGKKGE+VKKMREESGARINISEGNCPERI+T
Sbjct: 1 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT 60
Query: 93 ITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKI 152
+ GPT+AIFKAFAMI K EEDI +SM+NS A S+PPVTLRLVVPASQCGSLIGKGG KI
Sbjct: 61 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI 120
Query: 153 KEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLE----SPPKGATI 208
KEIRESTGAQVQVAGDMLPNSTERA+TI+G P +II+CVKQICVVMLE SPPKG TI
Sbjct: 121 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI 180
Query: 209 PYRPKPASTPVIFAGGQ-------------------------------AYTIQGQYAIPH 237
PYRPKP+S+PVIFAGGQ AYTIQGQYAIP
Sbjct: 181 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ 240
Query: 238 PDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHE 297
PD LTKLHQLAMQQ+ F P+ N F G + SS E + GLDAS ++HE
Sbjct: 241 PD-LTKLHQLAMQQSHF-PMTHGNTGFSGIE---SSSPEVKGYW----GLDASAQTTSHE 291
Query: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI 357
LTIPNDLIGCIIGRQG KINEIRQMSGAQIKIAN EGS++RQ+TITG+ A+ISLAQYLI
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 351
Query: 358 NARLTSEVTGMGT 370
N RL+SE GMG+
Sbjct: 352 NVRLSSETGGMGS 364
>gi|222352151 poly(rC) binding protein 1 [Homo sapiens]
Length = 356
Score = 423 bits (1088), Expect = e-118
Identities = 239/364 (65%), Positives = 277/364 (76%), Gaps = 37/364 (10%)
Query: 33 MESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVT 92
M++ V+E GLNVTLTIRLLMHGKEVGSIIGKKGE+VK++REESGARINISEGNCPERI+T
Sbjct: 1 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT 60
Query: 93 ITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKI 152
+TGPT+AIFKAFAMI K EEDI +SM+NS A S+PPVTLRLVVPA+QCGSLIGKGG KI
Sbjct: 61 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI 120
Query: 153 KEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLES---PPKG--AT 207
KEIRESTGAQVQVAGDMLPNSTERA+TI+G P ++ +CVKQIC+VMLE+ P+G T
Sbjct: 121 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT 180
Query: 208 IPYRPKPASTPVIFAGGQ----------------------AYTIQGQYAIPHPDQLTKLH 245
IPY+P PAS+PVI AGGQ AY+IQGQ+ I P L KL+
Sbjct: 181 IPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGPPLDAYSIQGQHTI-SPLDLAKLN 239
Query: 246 QLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLI 305
Q+A QQ+ F + F G + + G + LDAS +THELTIPN+LI
Sbjct: 240 QVARQQSHFAMM-HGGTGFAG------IDSSSPEVKGYWASLDAS-TQTTHELTIPNNLI 291
Query: 306 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEV 365
GCIIGRQG INEIRQMSGAQIKIAN EGSS RQ+TITG+ A+ISLAQYLINARL+SE
Sbjct: 292 GCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE- 350
Query: 366 TGMG 369
GMG
Sbjct: 351 KGMG 354
>gi|14670373 poly(rC) binding protein 4 isoform c [Homo sapiens]
Length = 403
Score = 379 bits (972), Expect = e-105
Identities = 198/333 (59%), Positives = 242/333 (72%), Gaps = 25/333 (7%)
Query: 39 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTD 98
E L++TLT+R+LMHGKEVGSIIGKKGETVK++RE+S ARI ISEG+CPERI TITG T
Sbjct: 11 EPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTA 70
Query: 99 AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 158
A+F A +MIA+K +ED+ + +N S+PPVTLRLV+PASQCGSLIGK G+KIKEIRE+
Sbjct: 71 AVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRET 130
Query: 159 TGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTP 218
TGAQVQVAGD+LPNSTERAVT+SG PDAII CV+QIC V+LESPPKGATIPY P +
Sbjct: 131 TGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGT 190
Query: 219 VIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQ 278
V+ + Q +++QGQY P ++TKL QL+ PF T P
Sbjct: 191 VLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPF----ATPSVVP------------- 233
Query: 279 NLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSE 338
GLD S+ E +PNDLIGC+IGRQG+KI+EIRQMSGA IKI N EG+ E
Sbjct: 234 -------GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE 286
Query: 339 RQITITGTPANISLAQYLINARL-TSEVTGMGT 370
R +TITG+P +I+LAQYLI A L T++ T GT
Sbjct: 287 RHVTITGSPVSIALAQYLITACLETAKSTSGGT 319
>gi|14670369 poly(rC) binding protein 4 isoform c [Homo sapiens]
Length = 403
Score = 379 bits (972), Expect = e-105
Identities = 198/333 (59%), Positives = 242/333 (72%), Gaps = 25/333 (7%)
Query: 39 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTD 98
E L++TLT+R+LMHGKEVGSIIGKKGETVK++RE+S ARI ISEG+CPERI TITG T
Sbjct: 11 EPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTA 70
Query: 99 AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRES 158
A+F A +MIA+K +ED+ + +N S+PPVTLRLV+PASQCGSLIGK G+KIKEIRE+
Sbjct: 71 AVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRET 130
Query: 159 TGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTP 218
TGAQVQVAGD+LPNSTERAVT+SG PDAII CV+QIC V+LESPPKGATIPY P +
Sbjct: 131 TGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGT 190
Query: 219 VIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQ 278
V+ + Q +++QGQY P ++TKL QL+ PF T P
Sbjct: 191 VLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPF----ATPSVVP------------- 233
Query: 279 NLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSE 338
GLD S+ E +PNDLIGC+IGRQG+KI+EIRQMSGA IKI N EG+ E
Sbjct: 234 -------GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGE 286
Query: 339 RQITITGTPANISLAQYLINARL-TSEVTGMGT 370
R +TITG+P +I+LAQYLI A L T++ T GT
Sbjct: 287 RHVTITGSPVSIALAQYLITACLETAKSTSGGT 319
>gi|9966803 poly(rC) binding protein 4 isoform a [Homo sapiens]
Length = 424
Score = 293 bits (750), Expect = 2e-79
Identities = 169/353 (47%), Positives = 209/353 (59%), Gaps = 80/353 (22%)
Query: 74 ESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLR 133
+S ARI ISEG+CPERI TITG T A+F A +MIA+K +ED+ + +N S+PPVTLR
Sbjct: 12 QSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLR 71
Query: 134 LVVPASQCGSLIGKGGSKIK---EIR---------------------------------- 156
LV+PASQCGSLIGK G+KIK E+R
Sbjct: 72 LVIPASQCGSLIGKAGTKIKEIREVRGEIYHPQGIRGKGAVVRGVLGLWRPPHLESSEPG 131
Query: 157 ------------------ESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVM 198
++TGAQVQVAGD+LPNSTERAVT+SG PDAII CV+QIC V+
Sbjct: 132 QPFSGLWEQPEVAPVLCLQTTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVI 191
Query: 199 LESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLG 258
LESPPKGATIPY P + V+ + Q +++QGQY P ++TKL QL+ PF
Sbjct: 192 LESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPF---- 247
Query: 259 QTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINE 318
T P GLD S+ E +PNDLIGC+IGRQG+KI+E
Sbjct: 248 ATPSVVP--------------------GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISE 287
Query: 319 IRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARL-TSEVTGMGT 370
IRQMSGA IKI N EG+ ER +TITG+P +I+LAQYLI A L T++ T GT
Sbjct: 288 IRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGT 340
Score = 45.8 bits (107), Expect = 6e-05
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 135 VVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTP--DAIIQCVK 192
+VP G +IG+ GSKI EIR+ +GA +++ G+ + ER VTI+G+P A+ Q +
Sbjct: 268 LVPNDLIGCVIGRQGSKISEIRQMSGAHIKI-GNQAEGAGERHVTITGSPVSIALAQYLI 326
Query: 193 QICVVMLESPPKGATIPYRPKPASTPVIFA 222
C+ +S G PA P F+
Sbjct: 327 TACLETAKSTSGGTP---SSAPADLPAPFS 353
Score = 37.4 bits (85), Expect = 0.022
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 57 VGSIIGKKGETVKKMREESGARINI---SEGNCPERIVTITGPTDAIFKAFAMIAYKFEE 113
+G +IG++G + ++R+ SGA I I +EG ER VTITG +I A +I E
Sbjct: 274 IGCVIGRQGSKISEIRQMSGAHIKIGNQAEG-AGERHVTITGSPVSIALAQYLITACLET 332
Query: 114 DIINS-------MSNSPATSKPPVTLRLVVPASQCGS 143
S ++ PA PP+T P G+
Sbjct: 333 AKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGT 369
>gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 106 bits (264), Expect = 4e-23
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 22/185 (11%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
+R+L+ K G++IGK G+ +K +R + A +++ + + PERI++I+ + I + I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 108 AYKFEEDIINSMSNSPATSKPPVT--------------------LRLVVPASQCGSLIGK 147
EE + + + ATS+ P+ LRL++ S G +IG
Sbjct: 105 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGV 162
Query: 148 GGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGAT 207
G+KIKE+RE+T +++ + P+ST+R V I G PD +++C+K I ++ ESP KG
Sbjct: 163 KGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 222
Query: 208 IPYRP 212
PY P
Sbjct: 223 QPYDP 227
Score = 70.9 bits (172), Expect = 2e-12
Identities = 39/76 (51%), Positives = 47/76 (61%)
Query: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQI 341
G+ S D P T ++TIP DL G IIG+ G +I +IR SGA IKI EGS +R I
Sbjct: 376 GRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRII 435
Query: 342 TITGTPANISLAQYLI 357
TITGT I AQYL+
Sbjct: 436 TITGTQDQIQNAQYLL 451
Score = 54.7 bits (130), Expect = 1e-07
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 128 PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI 187
P +T ++ +P GS+IGKGG +IK+IR +GA +++ + L S +R +TI+GT D I
Sbjct: 386 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQI 444
Score = 45.1 bits (105), Expect = 1e-04
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 58 GSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFKA 103
GSIIGK G+ +K++R ESGA I I E +RI+TITG D I A
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Score = 43.1 bits (100), Expect = 4e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 41 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPT 97
G + +RLL+H G IIG KG +K++RE + I + + CP +R+V I G
Sbjct: 140 GSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKP 199
Query: 98 DAIFKAFAMI 107
D + + +I
Sbjct: 200 DRVVECIKII 209
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 189
V LR+++ + G++IGKGG IK +R A V V P ER ++IS + I +
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSISADIETIGE 99
Query: 190 CVKQICVVM-----LESPPKGATIP 209
+K+I + L SP + +P
Sbjct: 100 ILKKIIPTLEEGLQLPSPTATSQLP 124
Score = 31.2 bits (69), Expect = 1.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI-ANATEGSSERQITITGTPANI 350
L I L G IIG +G KI E+R+ + IK+ S++R + I G P +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRV 202
>gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b
[Homo sapiens]
Length = 463
Score = 106 bits (264), Expect = 4e-23
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 22/185 (11%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
+R+L+ K G++IGK G+ +K +R + A +++ + + PERI++I+ + I + I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 108 AYKFEEDIINSMSNSPATSKPPVT--------------------LRLVVPASQCGSLIGK 147
EE + + + ATS+ P+ LRL++ S G +IG
Sbjct: 105 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGV 162
Query: 148 GGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGAT 207
G+KIKE+RE+T +++ + P+ST+R V I G PD +++C+K I ++ ESP KG
Sbjct: 163 KGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 222
Query: 208 IPYRP 212
PY P
Sbjct: 223 QPYDP 227
Score = 70.9 bits (172), Expect = 2e-12
Identities = 39/76 (51%), Positives = 47/76 (61%)
Query: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQI 341
G+ S D P T ++TIP DL G IIG+ G +I +IR SGA IKI EGS +R I
Sbjct: 376 GRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRII 435
Query: 342 TITGTPANISLAQYLI 357
TITGT I AQYL+
Sbjct: 436 TITGTQDQIQNAQYLL 451
Score = 54.7 bits (130), Expect = 1e-07
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 128 PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI 187
P +T ++ +P GS+IGKGG +IK+IR +GA +++ + L S +R +TI+GT D I
Sbjct: 386 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQI 444
Score = 45.1 bits (105), Expect = 1e-04
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 58 GSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFKA 103
GSIIGK G+ +K++R ESGA I I E +RI+TITG D I A
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Score = 43.1 bits (100), Expect = 4e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 41 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPT 97
G + +RLL+H G IIG KG +K++RE + I + + CP +R+V I G
Sbjct: 140 GSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKP 199
Query: 98 DAIFKAFAMI 107
D + + +I
Sbjct: 200 DRVVECIKII 209
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 189
V LR+++ + G++IGKGG IK +R A V V P ER ++IS + I +
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSISADIETIGE 99
Query: 190 CVKQICVVM-----LESPPKGATIP 209
+K+I + L SP + +P
Sbjct: 100 ILKKIIPTLEEGLQLPSPTATSQLP 124
Score = 31.2 bits (69), Expect = 1.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI-ANATEGSSERQITITGTPANI 350
L I L G IIG +G KI E+R+ + IK+ S++R + I G P +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRV 202
>gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 106 bits (264), Expect = 4e-23
Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 22/185 (11%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107
+R+L+ K G++IGK G+ +K +R + A +++ + + PERI++I+ + I + I
Sbjct: 45 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 104
Query: 108 AYKFEEDIINSMSNSPATSKPPVT--------------------LRLVVPASQCGSLIGK 147
EE + + + ATS+ P+ LRL++ S G +IG
Sbjct: 105 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGV 162
Query: 148 GGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGAT 207
G+KIKE+RE+T +++ + P+ST+R V I G PD +++C+K I ++ ESP KG
Sbjct: 163 KGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 222
Query: 208 IPYRP 212
PY P
Sbjct: 223 QPYDP 227
Score = 70.9 bits (172), Expect = 2e-12
Identities = 39/76 (51%), Positives = 47/76 (61%)
Query: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQI 341
G+ S D P T ++TIP DL G IIG+ G +I +IR SGA IKI EGS +R I
Sbjct: 376 GRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRII 435
Query: 342 TITGTPANISLAQYLI 357
TITGT I AQYL+
Sbjct: 436 TITGTQDQIQNAQYLL 451
Score = 54.7 bits (130), Expect = 1e-07
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 128 PPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAI 187
P +T ++ +P GS+IGKGG +IK+IR +GA +++ + L S +R +TI+GT D I
Sbjct: 386 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-DEPLEGSEDRIITITGTQDQI 444
Score = 45.1 bits (105), Expect = 1e-04
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 58 GSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFKA 103
GSIIGK G+ +K++R ESGA I I E +RI+TITG D I A
Sbjct: 400 GSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 447
Score = 43.1 bits (100), Expect = 4e-04
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 41 GLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPT 97
G + +RLL+H G IIG KG +K++RE + I + + CP +R+V I G
Sbjct: 140 GSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKP 199
Query: 98 DAIFKAFAMI 107
D + + +I
Sbjct: 200 DRVVECIKII 209
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 189
V LR+++ + G++IGKGG IK +R A V V P ER ++IS + I +
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSISADIETIGE 99
Query: 190 CVKQICVVM-----LESPPKGATIP 209
+K+I + L SP + +P
Sbjct: 100 ILKKIIPTLEEGLQLPSPTATSQLP 124
Score = 31.2 bits (69), Expect = 1.6
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKI-ANATEGSSERQITITGTPANI 350
L I L G IIG +G KI E+R+ + IK+ S++R + I G P +
Sbjct: 149 LLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRV 202
>gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]
Length = 492
Score = 93.6 bits (231), Expect = 3e-19
Identities = 95/348 (27%), Positives = 150/348 (43%), Gaps = 33/348 (9%)
Query: 49 RLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPERIVTITGPTDAIFKAF 104
+L++ G IIGK G TVK + E+SGA + +S+ N ER+VT++G + + KA
Sbjct: 134 KLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKAV 193
Query: 105 AMIAYKFEED-------------IINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGG-- 149
+ I K +ED + ++NS T P + V+PA+ S G
Sbjct: 194 SAIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLL 253
Query: 150 --SKIKEIRESTGAQVQVAG-DMLPNSTERAVTIS---GTPDAIIQCVKQICVVMLESPP 203
+ + + A +G D+L ST S T + +L +
Sbjct: 254 GPAGLAGVGAFPAALPAFSGTDLLAISTALNTLASYGYNTNSLGLGLNSAAASGVLAAVA 313
Query: 204 KGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQ-TNP 262
GA P A+ +AG G A P P L A+ LG
Sbjct: 314 AGAN-PAAAAAANLLASYAGEAGAGPAGGAAPPPPPPPGALGSFALAAAANGYLGAGAGG 372
Query: 263 AFPGEKLPLHSSEEAQNLMG---QSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEI 319
G PL ++ A G + L A E+ +P +L+G I+G+ G + E
Sbjct: 373 GAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY 432
Query: 320 RQMSGAQIKIANATE---GSSERQITITGTPANISLAQYLINARLTSE 364
++++GA+I+I+ E G+ R++TITG+PA AQYLI+ R+T E
Sbjct: 433 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 480
Score = 81.6 bits (200), Expect = 1e-15
Identities = 58/193 (30%), Positives = 98/193 (50%), Gaps = 23/193 (11%)
Query: 35 SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN-----CPER 89
+K S G +++L+ GSIIGK G+T+ ++++E+GA I +S+ ER
Sbjct: 22 TKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTER 81
Query: 90 IVTITGPTDAIFKAFAMIAYKFEE--------DIINSMSNSPATSKPP---VTLRLVVPA 138
+ + G +A+ + IA K E +++N + P T+ P +L+VP
Sbjct: 82 VCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQ--PQTTMNPDRAKQAKLIVPN 139
Query: 139 SQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQIC 195
S G +IGKGG+ +K + E +GA VQ++ P N ER VT+SG P+ + + V I
Sbjct: 140 STAGLIIGKGGATVKAVMEQSGAWVQLS--QKPEGINLQERVVTVSGEPEQVHKAVSAIV 197
Query: 196 VVMLESPPKGATI 208
+ E P + +
Sbjct: 198 QKVQEDPQSSSCL 210
Score = 52.4 bits (124), Expect = 7e-07
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 72/226 (31%)
Query: 132 LRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAVTISGTPDAIIQ 189
L++++P+ GS+IGKGG I ++++ TGA ++++ D P +TE
Sbjct: 35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTE-------------- 80
Query: 190 CVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAM 249
++C+V G A + L +H
Sbjct: 81 ---RVCLVQ-------------------------GTA------------EALNAVHSFIA 100
Query: 250 QQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCII 309
++ P T P E N++ + ++ A +L +PN G II
Sbjct: 101 EKVREIPQAMTKP-------------EVVNILQPQTTMNPDR-AKQAKLIVPNSTAGLII 146
Query: 310 GRQGTKINEIRQMSGAQIKIANATEGSS--ERQITITGTPANISLA 353
G+ G + + + SGA ++++ EG + ER +T++G P + A
Sbjct: 147 GKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQVHKA 192
>gi|100816392 far upstream element (FUSE) binding protein 3 [Homo
sapiens]
Length = 572
Score = 87.8 bits (216), Expect = 1e-17
Identities = 82/348 (23%), Positives = 150/348 (43%), Gaps = 50/348 (14%)
Query: 55 KEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFKAFAMIAYKFE 112
K VG IIG+ GE + +++ ESG +I I+ PER +TG ++I +A ++
Sbjct: 87 KMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLG---- 142
Query: 113 EDIINSMSNSPA----TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ-VQVAG 167
I++ N P +++PAS+ G +IG+GG IK+++E TG + V +
Sbjct: 143 -QIVDRCRNGPGFHNDIDSNSTIQEILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQD 201
Query: 168 DMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAY 227
LP ++ + I+G + Q + + ++ E +R GG
Sbjct: 202 GPLPTGADKPLRITGDAFKVQQAREMVLEIIREKD----QADFRGVRGDFNSRMGGGSIE 257
Query: 228 TIQGQYAI-----PHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKL-PLHSSEEAQNLM 281
++A+ + + + K+ A + F P +P + + P + A +++
Sbjct: 258 VSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHII 317
Query: 282 GQ----------SSGLDAS-------------PPASTHEL--TIPNDLIGCIIGRQGTKI 316
+ GL A+ P E+ T+P D G +IG+ G I
Sbjct: 318 SELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENI 377
Query: 317 NEIRQMSGAQIKIANATEGSSE---RQITITGTPANISLAQYLINARL 361
I Q SGA +++ +S+ R+ TI G P I +A+ LI+ ++
Sbjct: 378 KSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKV 425
Score = 69.3 bits (168), Expect = 5e-12
Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 20/181 (11%)
Query: 57 VGSIIGKKGETVKKMREESGARINIS--EGNCPERIVTITGPTDAIFKAFAMIAYKF--- 111
VG +IG+ GE +KK++ ++G RI +G PER + GP D A +I+
Sbjct: 265 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPERAAQVMGPPDRCQHAAHIISELILTA 324
Query: 112 -EEDIINSMSNSPATSKPP-----------VTLRLVVPASQCGSLIGKGGSKIKEIREST 159
E D ++ + + + VPA +CG +IGKGG IK I + +
Sbjct: 325 QERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIGKGGENIKSINQQS 384
Query: 160 GAQVQVAGDMLPNSTE--RAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST 217
GA V++ + PNS R TI G P I+ +Q+ + GA + P S
Sbjct: 385 GAHVELQRNPPPNSDPNLRRFTIRGVPQQ-IEVARQLIDEKVGGTNLGAPGAFGQSPFSQ 443
Query: 218 P 218
P
Sbjct: 444 P 444
Score = 65.9 bits (159), Expect = 6e-11
Identities = 65/280 (23%), Positives = 116/280 (41%), Gaps = 28/280 (10%)
Query: 113 EDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 172
+D + + + + +T VP G +IG+GG +I I+ +G ++Q+A +
Sbjct: 61 DDGVGNQLGALVHQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASES-SG 119
Query: 173 STERAVTISGTPDAIIQCVK---QICVVMLESP------PKGATIPYRPKPASTPVIFAG 223
ER ++GTP++I Q + QI P +TI PAS + G
Sbjct: 120 IPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEILIPASKVGLVIG 179
Query: 224 GQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFP-----PLGQTNPAFPGEK-----LPLHS 273
+G I + T + + +Q P P PL T AF ++ L +
Sbjct: 180 ------RGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQAREMVLEIIR 233
Query: 274 SEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAT 333
++ + G ++ + E+++P +G +IGR G I +I+ +G +I+
Sbjct: 234 EKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD 293
Query: 334 EGSSERQITITGTPANISLAQYLINARL--TSEVTGMGTL 371
S ER + G P A ++I+ + E G G L
Sbjct: 294 GISPERAAQVMGPPDRCQHAAHIISELILTAQERDGFGGL 333
Score = 57.4 bits (137), Expect = 2e-08
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 239 DQLTKLHQLAMQQTPFPPLGQTNP-------AFPGEKLPLHSSEEAQNLMGQSSGLDASP 291
D L ++ Q+A + P L + P + +K PL + Q L
Sbjct: 21 DALHRVRQIAAKIDSIPHLNNSTPLVDPSVYGYGVQKRPLDDG-----VGNQLGALVHQR 75
Query: 292 PASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANIS 351
T E +P+ ++G IIGR G +I+ I+ SG +I+IA+ + G ER +TGTP +I
Sbjct: 76 TVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIE 135
Query: 352 LAQYLI 357
A+ L+
Sbjct: 136 QAKRLL 141
Score = 52.8 bits (125), Expect = 5e-07
Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 8/143 (5%)
Query: 50 LLMHGKEVGSIIGKKGETVKKMREESGAR-INISEGNCP---ERIVTITGPTDAIFKAFA 105
+L+ +VG +IG+ GET+K+++E +G + + I +G P ++ + ITG + +A
Sbjct: 167 ILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQARE 226
Query: 106 M---IAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 162
M I + ++ + + ++ + VP G +IG+ G IK+I+ G +
Sbjct: 227 MVLEIIREKDQADFRGVRGDFNSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVR 286
Query: 163 VQVAGDMLPNSTERAVTISGTPD 185
+Q D S ERA + G PD
Sbjct: 287 IQFKPDD-GISPERAAQVMGPPD 308
>gi|64085377 insulin-like growth factor 2 mRNA binding protein 2
isoform a [Homo sapiens]
Length = 599
Score = 86.3 bits (212), Expect = 4e-17
Identities = 98/373 (26%), Positives = 160/373 (42%), Gaps = 45/373 (12%)
Query: 11 SVLPHSTLSTLSHHPQPQFGRRM--ESKVSEGGLN----VTLTIRLLMHGKEVGSIIGKK 64
S +P +S+ S + Q G E + GG + + +R+L+ + VG+IIGK+
Sbjct: 153 SYIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKE 212
Query: 65 GETVKKMREESGARINI---SEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN 121
G T+K + +++ +R++I E+ VTI + +A MI +I+ ++
Sbjct: 213 GLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMIL-----EIMQKEAD 267
Query: 122 SPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAVT 179
++ + L+++ G LIGK G +K+I TG ++ ++ D+ + ER +T
Sbjct: 268 ETKLAE-EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTIT 326
Query: 180 ISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPD 239
+ GT +A +I + E+ ++ QA I G
Sbjct: 327 VKGTVEACASAEIEIMKKLREA-------------FENDMLAVNQQANLIPGLNLSALGI 373
Query: 240 QLTKLHQLAMQQTPFPPLGQTN--PAFPGEKLPLH----SSEEAQNLMGQSSGLDASPPA 293
T L L+ PP G PA P H SS + G + P
Sbjct: 374 FSTGLSVLS------PPAGPRGAPPAAPYHPFTTHSGYFSSLYPHHQFGPFPHHHSYPEQ 427
Query: 294 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS--SERQITITGTPANIS 351
L IP +G IIG++G I ++ + +GA IKIA A EG SER + ITG P
Sbjct: 428 EIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPA-EGPDVSERMVIITGPPEAQF 486
Query: 352 LAQYLINARLTSE 364
AQ I +L E
Sbjct: 487 KAQGRIFGKLKEE 499
Score = 76.3 bits (186), Expect = 4e-14
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPTDAIFKAF 104
+ L + + VG+IIGKKG +K++ +GA I I+ P ER+V ITGP +A FKA
Sbjct: 430 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQ 489
Query: 105 AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 164
I K +E+ + N K +R VP+S G +IGKGG + E++ T A+V
Sbjct: 490 GRIFGKLKEE---NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 544
Query: 165 VAGDMLPNSTERAV 178
V D P+ E +
Sbjct: 545 VPRDQTPDENEEVI 558
>gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo
sapiens]
Length = 507
Score = 85.1 bits (209), Expect = 9e-17
Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 35/337 (10%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPERIVTITGPTDAIFKA 103
+++++ G IIGK G TVK + E+SGA + +S+ N ER+VT++G + KA
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 233
Query: 104 FAMIAYKFEED-------------IINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
+I K +ED + ++NS T P V+P + + + G +
Sbjct: 234 VELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGL-LGHA 292
Query: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
+ + G+ L T T++ + + A
Sbjct: 293 NLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASA 352
Query: 211 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLP 270
P A+ ++ + G A L LA TN F G P
Sbjct: 353 NPAAAAANLLATYASEASASGSTAGGTAGTFA-LGSLAAATAA------TNGYF-GAASP 404
Query: 271 LHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA 330
L +S ++G D S E+ +P +L+G I+G+ G + E ++++GA+I+I+
Sbjct: 405 LAASA----ILGTEKSTDGSKDVV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQIS 458
Query: 331 NATE---GSSERQITITGTPANISLAQYLINARLTSE 364
E G+ R++TITGTPA AQYLI R+T E
Sbjct: 459 KKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYE 495
Score = 78.6 bits (192), Expect = 9e-15
Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 44/222 (19%)
Query: 27 PQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN- 85
P+ G + E G +++L+ GSIIGK G+T+ ++++E+GA I +S+
Sbjct: 34 PEAGSTKRTNTGEDG---QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
Query: 86 ----CPERIVTITGPTDAIFKAFAMIAYKFEE-----------------------DIINS 118
ER+ I G +A+ IA K E I +
Sbjct: 91 FYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQT 150
Query: 119 MSNSPATSKP----PVT------LRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA-- 166
+ +SP T+K P+T ++++VP S G +IGKGG+ +K + E +GA VQ++
Sbjct: 151 LPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK 210
Query: 167 GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATI 208
D + N ER VT+SG P+ + V+ I + E P G+ +
Sbjct: 211 PDGI-NLQERVVTVSGEPEQNRKAVELIIQKIQEDPQSGSCL 251
Score = 65.5 bits (158), Expect = 7e-11
Identities = 59/237 (24%), Positives = 108/237 (45%), Gaps = 48/237 (20%)
Query: 132 LRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAVTISGTPDAIIQ 189
L++++P+ GS+IGKGG I ++++ TGA ++++ D P +TER I GT +A+
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNA 111
Query: 190 CVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAM 249
I + E P A + +P S +Q Q + +PD++
Sbjct: 112 VHGFIAEKIREMPQNVA----KTEPVSI-----------LQPQTTV-NPDRIK------- 148
Query: 250 QQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCII 309
Q P P T + P + P+ +S A+ ++ +PN G II
Sbjct: 149 QTLPSSPT--TTKSSPSD--PMTTSR-----------------ANQVKIIVPNSTAGLII 187
Query: 310 GRQGTKINEIRQMSGAQIKIANATEGSS--ERQITITGTPANISLAQYLINARLTSE 364
G+ G + + + SGA ++++ +G + ER +T++G P A LI ++ +
Sbjct: 188 GKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQED 244
Score = 35.4 bits (80), Expect = 0.083
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 268 KLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 327
K PL + EA + ++G D ++ IP+ G IIG+ G I ++++ +GA I
Sbjct: 27 KRPLEAPPEAGSTKRTNTGEDGQ---YFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATI 83
Query: 328 KIANATE---GSSERQITITGT 346
K++ + + G++ER I GT
Sbjct: 84 KLSKSKDFYPGTTERVCLIQGT 105
>gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo
sapiens]
Length = 483
Score = 85.1 bits (209), Expect = 9e-17
Identities = 60/198 (30%), Positives = 98/198 (49%), Gaps = 20/198 (10%)
Query: 27 PQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGN- 85
P+ G + E G +++L+ GSIIGK G+T+ ++++E+GA I +S+
Sbjct: 34 PEAGSTKRTNTGEDG---QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD 90
Query: 86 ----CPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVT---------L 132
ER+ I G +A+ IA K E N P + P T +
Sbjct: 91 FYPGTTERVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQV 150
Query: 133 RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVA--GDMLPNSTERAVTISGTPDAIIQC 190
+++VP S G +IGKGG+ +K + E +GA VQ++ D + N ER VT+SG P+ +
Sbjct: 151 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGI-NLQERVVTVSGEPEQNRKA 209
Query: 191 VKQICVVMLESPPKGATI 208
V+ I + E P G+ +
Sbjct: 210 VELIIQKIQEDPQSGSCL 227
Score = 85.1 bits (209), Expect = 9e-17
Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 35/337 (10%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG----NCPERIVTITGPTDAIFKA 103
+++++ G IIGK G TVK + E+SGA + +S+ N ER+VT++G + KA
Sbjct: 150 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 209
Query: 104 FAMIAYKFEED-------------IINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
+I K +ED + ++NS T P V+P + + + G +
Sbjct: 210 VELIIQKIQEDPQSGSCLNISYANVTGPVANSNPTGSPYANTAEVLPTAAAAAGL-LGHA 268
Query: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
+ + G+ L T T++ + + A
Sbjct: 269 NLAGVAAFPAVLSGFTGNDLVAITSALNTLASYGYNLNTLGLGLSQAAATGALAAAAASA 328
Query: 211 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLP 270
P A+ ++ + G A L LA TN F G P
Sbjct: 329 NPAAAAANLLATYASEASASGSTAGGTAGTFA-LGSLAAATAA------TNGYF-GAASP 380
Query: 271 LHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA 330
L +S ++G D S E+ +P +L+G I+G+ G + E ++++GA+I+I+
Sbjct: 381 LAASA----ILGTEKSTDGSKDVV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQIS 434
Query: 331 NATE---GSSERQITITGTPANISLAQYLINARLTSE 364
E G+ R++TITGTPA AQYLI R+T E
Sbjct: 435 KKGEFVPGTRNRKVTITGTPAATQAAQYLITQRITYE 471
Score = 35.4 bits (80), Expect = 0.083
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 268 KLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQI 327
K PL + EA + ++G D ++ IP+ G IIG+ G I ++++ +GA I
Sbjct: 27 KRPLEAPPEAGSTKRTNTGEDGQ---YFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATI 83
Query: 328 KIANATE---GSSERQITITGT 346
K++ + + G++ER I GT
Sbjct: 84 KLSKSKDFYPGTTERVCLIQGT 105
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 85.1 bits (209), Expect = 9e-17
Identities = 93/400 (23%), Positives = 158/400 (39%), Gaps = 88/400 (22%)
Query: 24 HPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINIS- 82
HP P+ E +V +G VG IIG+ GE + K++++SG ++ IS
Sbjct: 138 HPPPRTSMTEEYRVPDG---------------MVGLIIGRGGEQINKIQQDSGCKVQISP 182
Query: 83 -EGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATS--------KPPVTLR 133
G PER V++TG +++ KA M+ +DI++ P +
Sbjct: 183 DSGGLPERSVSLTGAPESVQKAKMML-----DDIVSRGRGGPPGQFHDNANGGQNGTVQE 237
Query: 134 LVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN-STERAVTISGTPDAIIQCVK 192
+++PA + G +IGKGG IK+++E G ++ + D N + ++ + I G P + Q +
Sbjct: 238 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACE 297
Query: 193 QICVVMLESPP--------------KGATIPYRPKPASTPVIFAGGQAYTIQ-------- 230
+ ++ E G +P + +G IQ
Sbjct: 298 MVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ 357
Query: 231 -------GQYAIPH----PDQ-------LTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLH 272
G I H PD+ + L Q P PP G P PG +
Sbjct: 358 FKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSGPPGPPGGPGMP--PGGR---- 411
Query: 273 SSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA 332
G+ G + PP +IP G +IGR G + I Q +GA ++I+
Sbjct: 412 -------GRGRGQG-NWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQ 463
Query: 333 TEGSSE---RQITITGTPANISLAQYLINARLTSEVTGMG 369
+ + + I G+P I A+ LI ++ + +G
Sbjct: 464 LPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPLCPVG 503
Score = 72.8 bits (177), Expect = 5e-13
Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 52/236 (22%)
Query: 18 LSTLSHHPQPQFGRRME--SKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREES 75
+ L Q FG R E S++ GG++V + VG +IG+ GE +KK++ ++
Sbjct: 300 MDILRERDQGGFGDRNEYGSRIG-GGIDVPVPRH------SVGVVIGRSGEMIKKIQNDA 352
Query: 76 GARINISE--GNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPAT-------- 125
G RI + G PE+I I GP D A +I D++ S+ + P
Sbjct: 353 GVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARII-----NDLLQSLRSGPPGPPGGPGMP 407
Query: 126 -------------SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPN 172
P + +P +CG +IG+GG +K I + TGA V+++ + PN
Sbjct: 408 PGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPN 467
Query: 173 STE--RAVTISGTPDAIIQCVKQICVVMLESP------------PKGATIPYRPKP 214
+ I G+P I KQ+ +E P P G P+ P P
Sbjct: 468 GDPNFKLFIIRGSPQQ-IDHAKQLIEEKIEGPLCPVGPGPGGPGPAGPMGPFNPGP 522
Score = 58.5 bits (140), Expect = 9e-09
Identities = 32/105 (30%), Positives = 60/105 (57%), Gaps = 10/105 (9%)
Query: 264 FPGEKLPLHSSE--EAQNLMGQSSGLDAS------PPAS--THELTIPNDLIGCIIGRQG 313
F G+K L + E++ L Q + + PP + T E +P+ ++G IIGR G
Sbjct: 105 FGGQKRQLEDGDQPESKKLASQGDSISSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGG 164
Query: 314 TKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLIN 358
+IN+I+Q SG +++I+ + G ER +++TG P ++ A+ +++
Sbjct: 165 EQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLD 209
>gi|17402900 far upstream element-binding protein [Homo sapiens]
Length = 644
Score = 82.0 bits (201), Expect = 8e-16
Identities = 88/358 (24%), Positives = 149/358 (41%), Gaps = 59/358 (16%)
Query: 57 VGSIIGKKGETVKKMREESGARINIS--EGNCPERIVTITGPTDAIFKAFAMIAYKFEED 114
VG IIG+ GE + ++++ESG +I I+ G PER +TG +++ A ++ +
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL-----DQ 166
Query: 115 IINSMSNSPA----TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML 170
I+ +P +++PAS+ G +IGKGG IK+++E G ++ + D
Sbjct: 167 IVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP 226
Query: 171 PNS-TERAVTISGTPDAIIQCVKQICVVMLE---------------SPPKGATIPYRPKP 214
N+ ++ + I+G P + Q + + ++ + +G +P P+
Sbjct: 227 QNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDVPI-PRF 285
Query: 215 ASTPVIFAGGQAY-TIQGQYAIP---HPDQLTKLHQLAMQQTPFPP-------------- 256
A VI G+ IQ + PD T ++A Q PP
Sbjct: 286 AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIA--QITGPPDRCQHAAEIITDLL 343
Query: 257 --LGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGT 314
+ NP PG + MG GL +P G IIG+ G
Sbjct: 344 RSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGL------QEFNFIVPTGKTGLIIGKGGE 397
Query: 315 KINEIRQMSGAQIKIANATEGSSE---RQITITGTPANISLAQYLINARLTSEVTGMG 369
I I Q SGA+I++ +++ + TI GTP I A+ LI ++ V +G
Sbjct: 398 TIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLG 455
Score = 74.7 bits (182), Expect = 1e-13
Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 32/188 (17%)
Query: 57 VGSIIGKKGETVKKMREESGARINIS--EGNCPERIVTITGPTDAIFKAFAMIAYKFEED 114
VG +IG+ GE +KK++ ++G RI +G PERI ITGP D A +I D
Sbjct: 287 VGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRCQHAAEIIT-----D 341
Query: 115 IINSM-SNSPA----------------TSKPPVTLR---LVVPASQCGSLIGKGGSKIKE 154
++ S+ + +P PP L+ +VP + G +IGKGG IK
Sbjct: 342 LLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKS 401
Query: 155 IRESTGAQVQVAGDMLPNS--TERAVTISGTPDAIIQCVKQICVVMLESP--PKGATIPY 210
I + +GA++++ + PN+ + TI GTP I +Q+ + P P G +P+
Sbjct: 402 ISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQ-IDYARQLIEEKIGGPVNPLGPPVPH 460
Query: 211 RPKPASTP 218
P P
Sbjct: 461 GPHGVPGP 468
Score = 57.0 bits (136), Expect = 3e-08
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 257 LGQTNPAFPGEKLPLHSSEE--AQNLMGQSSGLDASPP---------ASTHELTIPNDLI 305
L + + G+K PL ++ A+ + Q+ P T E +P+ ++
Sbjct: 53 LNSNDYGYGGQKRPLEDGDQPDAKKVAPQNDSFGTQLPPMHQQQSRSVMTEEYKVPDGMV 112
Query: 306 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLIN 358
G IIGR G +I+ I+Q SG +I+IA + G ER +TGTP ++ A+ L++
Sbjct: 113 GFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLD 165
Score = 56.2 bits (134), Expect = 5e-08
Identities = 61/266 (22%), Positives = 109/266 (40%), Gaps = 37/266 (13%)
Query: 126 SKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM--LPNSTERAVTISGT 183
S+ +T VP G +IG+GG +I I++ +G ++Q+A D LP ER+ ++GT
Sbjct: 97 SRSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLP---ERSCMLTGT 153
Query: 184 PDAIIQCVKQICVVMLES--PPKGATIPYRPKPASTPVIFAGGQAYTI--QGQYAIPHPD 239
P++ +Q K++ ++E P G P A ++ +A + +G I
Sbjct: 154 PES-VQSAKRLLDQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQ 212
Query: 240 QLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEA------------------QNLM 281
+ + + +Q P G+ + ++E + +
Sbjct: 213 ERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRI 272
Query: 282 GQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQI 341
G + G+D + IP +G +IGR G I +I+ +G +I+ + ER
Sbjct: 273 GGNEGID---------VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIA 323
Query: 342 TITGTPANISLAQYLINARLTSEVTG 367
ITG P A +I L S G
Sbjct: 324 QITGPPDRCQHAAEIITDLLRSVQAG 349
Score = 47.0 bits (110), Expect = 3e-05
Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 50 LLMHGKEVGSIIGKKGETVKKMREESGAR-INISEG---NCPERIVTITGPTDAIFKAFA 105
+++ + G +IGK GET+K+++E +G + + I +G ++ + ITG + +A
Sbjct: 190 IMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKE 249
Query: 106 MIAYKFEE-----DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG 160
M+ + ++ N + ++ + + +P G +IG+ G IK+I+ G
Sbjct: 250 MVLELIRDQGGFREVRNEYGSRIGGNE---GIDVPIPRFAVGIVIGRNGEMIKKIQNDAG 306
Query: 161 AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKG 205
++Q D + ER I+G PD Q +I +L S G
Sbjct: 307 VRIQFKPDD-GTTPERIAQITGPPDR-CQHAAEIITDLLRSVQAG 349
Score = 36.2 bits (82), Expect = 0.049
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 56 EVGSIIGKKGETVKKMREESGARINISEGNCPE-----RIVTITGPTDAIFKAFAMIAYK 110
+ G IIGK GET+K + ++SGARI + P ++ TI G I A +I K
Sbjct: 387 KTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEK 446
>gi|56118219 insulin-like growth factor 2 mRNA binding protein 2
isoform b [Homo sapiens]
Length = 556
Score = 77.0 bits (188), Expect = 2e-14
Identities = 91/367 (24%), Positives = 153/367 (41%), Gaps = 76/367 (20%)
Query: 11 SVLPHSTLSTLSHHPQPQFGRRM--ESKVSEGGLN----VTLTIRLLMHGKEVGSIIGKK 64
S +P +S+ S + Q G E + GG + + +R+L+ + VG+IIGK+
Sbjct: 153 SYIPDEEVSSPSPPQRAQRGDHSSREQGHAPGGTSQARQIDFPLRILVPTQFVGAIIGKE 212
Query: 65 GETVKKMREESGARINI---SEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSN 121
G T+K + +++ +R++I E+ VTI + +A MI +I+ ++
Sbjct: 213 GLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMIL-----EIMQKEAD 267
Query: 122 SPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAVT 179
++ + L+++ G LIGK G +K+I TG ++ ++ D+ + ER +T
Sbjct: 268 ETKLAE-EIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTIT 326
Query: 180 ISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPD 239
+ GT +A +I + E+ T G ++ +P
Sbjct: 327 VKGTVEACASAEIEIMKKLREAFENDML-----------------AVNTHSGYFSSLYPH 369
Query: 240 QLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELT 299
HQ PFP H S Q ++ L
Sbjct: 370 -----HQFG----PFPH---------------HHSYPEQEIV---------------NLF 390
Query: 300 IPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS--SERQITITGTPANISLAQYLI 357
IP +G IIG++G I ++ + +GA IKIA A EG SER + ITG P AQ I
Sbjct: 391 IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPA-EGPDVSERMVIITGPPEAQFKAQGRI 449
Query: 358 NARLTSE 364
+L E
Sbjct: 450 FGKLKEE 456
Score = 76.3 bits (186), Expect = 4e-14
Identities = 49/134 (36%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCP---ERIVTITGPTDAIFKAF 104
+ L + + VG+IIGKKG +K++ +GA I I+ P ER+V ITGP +A FKA
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQ 446
Query: 105 AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 164
I K +E+ + N K +R VP+S G +IGKGG + E++ T A+V
Sbjct: 447 GRIFGKLKEE---NFFNPKEEVKLEAHIR--VPSSTAGRVIGKGGKTVNELQNLTSAEVI 501
Query: 165 VAGDMLPNSTERAV 178
V D P+ E +
Sbjct: 502 VPRDQTPDENEEVI 515
>gi|30795212 insulin-like growth factor 2 mRNA binding protein 3
[Homo sapiens]
Length = 579
Score = 76.3 bits (186), Expect = 4e-14
Identities = 84/328 (25%), Positives = 142/328 (43%), Gaps = 55/328 (16%)
Query: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---SEGNCPERIVTITGP---TDA 99
L +RLL+ + VG+IIGK+G T++ + +++ ++I++ E+ +TI T A
Sbjct: 196 LPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSA 255
Query: 100 IFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIREST 159
K+ I +K +DI + L+++ + G LIGK G +K+I + T
Sbjct: 256 ACKSILEIMHKEAQDI---------KFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDT 306
Query: 160 GAQVQVA--GDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST 217
++ ++ ++ + ER +T+ G + + ++I + ES Y AS
Sbjct: 307 DTKITISPLQELTLYNPERTITVKGNVETCAKAEEEIMKKIRES--------YENDIASM 358
Query: 218 PVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEA 277
+ QA+ I G L+ L + FPP P G P +
Sbjct: 359 NL-----QAHLIPG----------LNLNALGL----FPPTSGMPPPTSG---PPSAMTPP 396
Query: 278 QNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSS 337
QS T L IP +G IIG+QG I ++ + +GA IKIA A +
Sbjct: 397 YPQFEQSE-------TETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDA 449
Query: 338 E-RQITITGTPANISLAQYLINARLTSE 364
+ R + ITG P AQ I ++ E
Sbjct: 450 KVRMVIITGPPEAQFKAQGRIYGKIKEE 477
Score = 73.9 bits (180), Expect = 2e-13
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 8/137 (5%)
Query: 45 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPE---RIVTITGPTDAIF 101
T T+ L + VG+IIGK+G+ +K++ +GA I I+ P+ R+V ITGP +A F
Sbjct: 405 TETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQF 464
Query: 102 KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGA 161
KA I K +E+ S + + + VP+ G +IGKGG + E++ + A
Sbjct: 465 KAQGRIYGKIKEENFVS-----PKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSA 519
Query: 162 QVQVAGDMLPNSTERAV 178
+V V D P+ ++ V
Sbjct: 520 EVVVPRDQTPDENDQVV 536
Score = 44.3 bits (103), Expect = 2e-04
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 122 SPATSKP-PVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTI 180
S + KP + LRL+VP G++IGK G+ I+ I + T +++ V + E+++TI
Sbjct: 187 SVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITI 246
Query: 181 SGTPDAIIQCVKQICVVM 198
TP+ K I +M
Sbjct: 247 LSTPEGTSAACKSILEIM 264
Score = 39.3 bits (90), Expect = 0.006
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 270 PLHSSEEAQNLMGQSSGLDASPPASTHE--------LTIPNDLIGCIIGRQGTKINEIRQ 321
PL + L + S SP + + + L +P +G IIG++G I I +
Sbjct: 164 PLQQPRGRRGLGQRGSSRQGSPGSVSKQKPCDLPLRLLVPTQFVGAIIGKEGATIRNITK 223
Query: 322 MSGAQIKI-ANATEGSSERQITITGTPANISLA 353
+ ++I + G++E+ ITI TP S A
Sbjct: 224 QTQSKIDVHRKENAGAAEKSITILSTPEGTSAA 256
Score = 28.9 bits (63), Expect = 7.8
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 29 FGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPE 88
+G+ E V L + + G +IGK G+TV +++ S A + + P+
Sbjct: 471 YGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPD 530
Query: 89 R----IVTITG 95
+V ITG
Sbjct: 531 ENDQVVVKITG 541
>gi|56237027 insulin-like growth factor 2 mRNA binding protein 1
isoform 1 [Homo sapiens]
Length = 577
Score = 73.9 bits (180), Expect = 2e-13
Identities = 82/345 (23%), Positives = 146/345 (42%), Gaps = 49/345 (14%)
Query: 26 QPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---S 82
QP+ G + + V + +RLL+ + VG+IIGK+G T++ + +++ ++I++
Sbjct: 176 QPRQGSPVAAGAPAKQQQVDIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKE 235
Query: 83 EGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCG 142
E+ +++ + A MI +I++ + T+ V L+++ + G
Sbjct: 236 NAGAAEKAISVHSTPEGCSSACKMIL-----EIMHKEAKDTKTA-DEVPLKILAHNNFVG 289
Query: 143 SLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAVTISGTPDAIIQCVKQICVVMLE 200
LIGK G +K++ + T ++ ++ D+ + ER +T+ G AI C + +M
Sbjct: 290 RLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKG---AIENCCRAEQEIM-- 344
Query: 201 SPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQT 260
K Y A+ + Q++ I G L + P PP T
Sbjct: 345 ---KKVREAYENDVAAMSL-----QSHLIPGLNL-----AAVGLFPASSSAVPPPPSSVT 391
Query: 261 NPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIR 320
A P S +A P ++ IP +G IIG++G I ++
Sbjct: 392 GAA------PYSSFMQA-------------PEQEMVQVFIPAQAVGAIIGKKGQHIKQLS 432
Query: 321 QMSGAQIKIA-NATEGSSERQITITGTPANISLAQYLINARLTSE 364
+ + A IKIA T S R + ITG P AQ I +L E
Sbjct: 433 RFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEE 477
Score = 72.4 bits (176), Expect = 6e-13
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPE---RIVTITGPTDAIFKAF 104
+++ + + VG+IIGKKG+ +K++ + A I I+ P+ R+V ITGP +A FKA
Sbjct: 408 VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQ 467
Query: 105 AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 164
I K +E+ + + + VPAS G +IGKGG + E++ T A+V
Sbjct: 468 GRIYGKLKEENFFGPKE-----EVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVV 522
Query: 165 VAGDMLPNSTERAV 178
V D P+ ++ +
Sbjct: 523 VPRDQTPDENDQVI 536
>gi|238624257 insulin-like growth factor 2 mRNA binding protein 1
isoform 2 [Homo sapiens]
Length = 438
Score = 72.4 bits (176), Expect = 6e-13
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 8/134 (5%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPE---RIVTITGPTDAIFKAF 104
+++ + + VG+IIGKKG+ +K++ + A I I+ P+ R+V ITGP +A FKA
Sbjct: 269 VQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQ 328
Query: 105 AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQ 164
I K +E+ + + + VPAS G +IGKGG + E++ T A+V
Sbjct: 329 GRIYGKLKEENFFGPKE-----EVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVV 383
Query: 165 VAGDMLPNSTERAV 178
V D P+ ++ +
Sbjct: 384 VPRDQTPDENDQVI 397
Score = 61.6 bits (148), Expect = 1e-09
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 45/184 (24%)
Query: 48 IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNC-----PERIVTITGPTDAIFK 102
+++L H VG +IGK+G +KK+ +++ +I IS PER +T+ G + +
Sbjct: 140 LKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCR 199
Query: 103 AFAMIAYKFEEDIINSMS----------------------NSPATSKPPVTL-------- 132
A I K E N ++ +S A PP ++
Sbjct: 200 AEQEIMKKVREAYENDVAAMSLQSHLIPGLNLAAVGLFPASSSAVPPPPSSVTGAAPYSS 259
Query: 133 ----------RLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG 182
++ +PA G++IGK G IK++ A +++A P+S R V I+G
Sbjct: 260 FMQAPEQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITG 319
Query: 183 TPDA 186
P+A
Sbjct: 320 PPEA 323
Score = 50.4 bits (119), Expect = 2e-06
Identities = 57/238 (23%), Positives = 96/238 (40%), Gaps = 40/238 (16%)
Query: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAG--DMLPNSTERAVTISGTPDAI 187
V L+++ + G LIGK G +K++ + T ++ ++ D+ + ER +T+ G +
Sbjct: 138 VPLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENC 197
Query: 188 IQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQL 247
+ ++I + E+ Y A+ + Q++ I G L
Sbjct: 198 CRAEQEIMKKVREA--------YENDVAAMSL-----QSHLIPGLNLAA-----VGLFPA 239
Query: 248 AMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGC 307
+ P PP T A P S +A P ++ IP +G
Sbjct: 240 SSSAVPPPPSSVTGAA------PYSSFMQA-------------PEQEMVQVFIPAQAVGA 280
Query: 308 IIGRQGTKINEIRQMSGAQIKIA-NATEGSSERQITITGTPANISLAQYLINARLTSE 364
IIG++G I ++ + + A IKIA T S R + ITG P AQ I +L E
Sbjct: 281 IIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEE 338
>gi|145312259 tudor and KH domain containing isoform a [Homo
sapiens]
Length = 561
Score = 57.8 bits (138), Expect = 2e-08
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 21/143 (14%)
Query: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCPERIVTITGPTDAIFKAF 104
+ I + + + V IIG++G +K++R+++GARI++ +E ER++ I+G + KA
Sbjct: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAK 112
Query: 105 AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV- 163
A I + T PV+ +L VP G +IG+GG I+ I +++GA++
Sbjct: 113 AAI-------------HQILTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKIT 159
Query: 164 ---QVAGDMLPNSTERAVTISGT 183
+ G +L R + ISGT
Sbjct: 160 CDKESEGTLL---LSRLIKISGT 179
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 297 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 356
E+ +P + + IIGRQG I ++R+ +GA+I + G ER + I+G P + A+
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQVCKAKAA 114
Query: 357 INARLT 362
I+ LT
Sbjct: 115 IHQILT 120
Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS--SERQITITGTPANISL 352
+ +L++P +G IIGR G I I + SGA+I +EG+ R I I+GT ++
Sbjct: 126 SEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAA 185
Query: 353 AQYLINARLTSE 364
A++LI +++ +
Sbjct: 186 AKHLILEKVSED 197
Score = 38.1 bits (87), Expect = 0.013
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 43 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---SEGN-CPERIVTITGPTD 98
N ++ +L + + VG IIG+ GET++ + + SGA+I SEG R++ I+G
Sbjct: 122 NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK 181
Query: 99 AIFKAFAMIAYKFEED--IINSMSNSPATSKP---PVTLR 133
+ A +I K ED + +++S T P P+++R
Sbjct: 182 EVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVR 221
>gi|145312270 tudor and KH domain containing isoform a [Homo
sapiens]
Length = 561
Score = 57.8 bits (138), Expect = 2e-08
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 21/143 (14%)
Query: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCPERIVTITGPTDAIFKAF 104
+ I + + + V IIG++G +K++R+++GARI++ +E ER++ I+G + KA
Sbjct: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAK 112
Query: 105 AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV- 163
A I + T PV+ +L VP G +IG+GG I+ I +++GA++
Sbjct: 113 AAI-------------HQILTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKIT 159
Query: 164 ---QVAGDMLPNSTERAVTISGT 183
+ G +L R + ISGT
Sbjct: 160 CDKESEGTLL---LSRLIKISGT 179
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 297 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 356
E+ +P + + IIGRQG I ++R+ +GA+I + G ER + I+G P + A+
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQVCKAKAA 114
Query: 357 INARLT 362
I+ LT
Sbjct: 115 IHQILT 120
Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS--SERQITITGTPANISL 352
+ +L++P +G IIGR G I I + SGA+I +EG+ R I I+GT ++
Sbjct: 126 SEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAA 185
Query: 353 AQYLINARLTSE 364
A++LI +++ +
Sbjct: 186 AKHLILEKVSED 197
Score = 38.1 bits (87), Expect = 0.013
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 43 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---SEGN-CPERIVTITGPTD 98
N ++ +L + + VG IIG+ GET++ + + SGA+I SEG R++ I+G
Sbjct: 122 NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK 181
Query: 99 AIFKAFAMIAYKFEED--IINSMSNSPATSKP---PVTLR 133
+ A +I K ED + +++S T P P+++R
Sbjct: 182 EVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVR 221
>gi|145312256 tudor and KH domain containing isoform a [Homo
sapiens]
Length = 561
Score = 57.8 bits (138), Expect = 2e-08
Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 21/143 (14%)
Query: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCPERIVTITGPTDAIFKAF 104
+ I + + + V IIG++G +K++R+++GARI++ +E ER++ I+G + KA
Sbjct: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAK 112
Query: 105 AMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV- 163
A I + T PV+ +L VP G +IG+GG I+ I +++GA++
Sbjct: 113 AAI-------------HQILTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKIT 159
Query: 164 ---QVAGDMLPNSTERAVTISGT 183
+ G +L R + ISGT
Sbjct: 160 CDKESEGTLL---LSRLIKISGT 179
Score = 44.7 bits (104), Expect = 1e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 297 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 356
E+ +P + + IIGRQG I ++R+ +GA+I + G ER + I+G P + A+
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVG-DERVLLISGFPVQVCKAKAA 114
Query: 357 INARLT 362
I+ LT
Sbjct: 115 IHQILT 120
Score = 42.4 bits (98), Expect = 7e-04
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 295 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGS--SERQITITGTPANISL 352
+ +L++P +G IIGR G I I + SGA+I +EG+ R I I+GT ++
Sbjct: 126 SEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAA 185
Query: 353 AQYLINARLTSE 364
A++LI +++ +
Sbjct: 186 AKHLILEKVSED 197
Score = 38.1 bits (87), Expect = 0.013
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 43 NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI---SEGN-CPERIVTITGPTD 98
N ++ +L + + VG IIG+ GET++ + + SGA+I SEG R++ I+G
Sbjct: 122 NTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQK 181
Query: 99 AIFKAFAMIAYKFEED--IINSMSNSPATSKP---PVTLR 133
+ A +I K ED + +++S T P P+++R
Sbjct: 182 EVAAAKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVR 221
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,191,978
Number of Sequences: 37866
Number of extensions: 746559
Number of successful extensions: 2351
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1909
Number of HSP's gapped (non-prelim): 280
length of query: 371
length of database: 18,247,518
effective HSP length: 104
effective length of query: 267
effective length of database: 14,309,454
effective search space: 3820624218
effective search space used: 3820624218
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.