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Search of human proteins with 113413229
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113413229 PREDICTED: hypothetical protein [Homo sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113414000 PREDICTED: hypothetical protein [Homo sapiens] 318 2e-87
gi|113413229 PREDICTED: hypothetical protein [Homo sapiens] 318 2e-87
gi|169163737 PREDICTED: hypothetical protein [Homo sapiens] 317 3e-87
gi|33188461 GATA binding protein 4 [Homo sapiens] 35 0.020
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 35 0.020
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 35 0.026
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 35 0.026
gi|40068487 von Willebrand factor A domain containing 1 isoform ... 35 0.026
gi|40068485 von Willebrand factor A domain containing 1 isoform ... 35 0.026
gi|239757110 PREDICTED: hypothetical protein [Homo sapiens] 35 0.034
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 34 0.045
gi|5453844 TAF6-like RNA polymerase II [Homo sapiens] 34 0.045
gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 33 0.076
gi|5803080 macrophage receptor with collagenous structure [Homo ... 33 0.100
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 33 0.100
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 33 0.100
gi|4758392 forkhead box D1 [Homo sapiens] 33 0.100
gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo... 33 0.100
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 32 0.17
gi|110832843 TBP-associated factor 4 [Homo sapiens] 32 0.22
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 32 0.22
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 32 0.22
gi|7706469 Kruppel-like factor [Homo sapiens] 32 0.29
gi|19923812 oxysterol-binding protein-like protein 10 [Homo sapi... 32 0.29
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 32 0.29
gi|187608767 E74-like factor 4 [Homo sapiens] 31 0.38
gi|4503555 E74-like factor 4 [Homo sapiens] 31 0.38
gi|157311635 FAM83H [Homo sapiens] 31 0.38
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 31 0.38
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 31 0.38
>gi|113414000 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 318 bits (814), Expect = 2e-87
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MTPTKREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG 60
MTPTKREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG
Sbjct: 1 MTPTKREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG 60
Query: 61 ADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFESSKFIQLILKGN 120
ADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFESSKFIQLILKGN
Sbjct: 61 ADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFESSKFIQLILKGN 120
Query: 121 EVYVQIGNNVEYCCAVPSLPETTAACILHRARRSADA 157
EVYVQIGNNVEYCCAVPSLPETTAACILHRARRSADA
Sbjct: 121 EVYVQIGNNVEYCCAVPSLPETTAACILHRARRSADA 157
>gi|113413229 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 318 bits (814), Expect = 2e-87
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MTPTKREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG 60
MTPTKREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG
Sbjct: 1 MTPTKREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG 60
Query: 61 ADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFESSKFIQLILKGN 120
ADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFESSKFIQLILKGN
Sbjct: 61 ADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFESSKFIQLILKGN 120
Query: 121 EVYVQIGNNVEYCCAVPSLPETTAACILHRARRSADA 157
EVYVQIGNNVEYCCAVPSLPETTAACILHRARRSADA
Sbjct: 121 EVYVQIGNNVEYCCAVPSLPETTAACILHRARRSADA 157
>gi|169163737 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 317 bits (811), Expect = 3e-87
Identities = 156/157 (99%), Positives = 157/157 (100%)
Query: 1 MTPTKREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG 60
MTPTKREPPAAPLLLRVLPQLS+MSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG
Sbjct: 1 MTPTKREPPAAPLLLRVLPQLSSMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG 60
Query: 61 ADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFESSKFIQLILKGN 120
ADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFESSKFIQLILKGN
Sbjct: 61 ADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFESSKFIQLILKGN 120
Query: 121 EVYVQIGNNVEYCCAVPSLPETTAACILHRARRSADA 157
EVYVQIGNNVEYCCAVPSLPETTAACILHRARRSADA
Sbjct: 121 EVYVQIGNNVEYCCAVPSLPETTAACILHRARRSADA 157
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 35.4 bits (80), Expect = 0.020
Identities = 38/121 (31%), Positives = 45/121 (37%), Gaps = 18/121 (14%)
Query: 42 GGASSGRGLSGPGIGEGS------GADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAV 95
GGA+SG +GPG +GS GAD A P PVS PR P TG A
Sbjct: 72 GGAASG---AGPGTQQGSPGWSQAGADGAAYTPPPVS--------PRFSFPGTTGSLAAA 120
Query: 96 GHSPGAEGQIAFES-SKFIQLILKGNEVYVQIGNNVEYCCAVPSLPETTAACILHRARRS 154
+ A A+ S L G E Y + G Y P+ A A S
Sbjct: 121 AAAAAAREAAAYSSGGGAAGAGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAAS 180
Query: 155 A 155
A
Sbjct: 181 A 181
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 35.4 bits (80), Expect = 0.020
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 50 LSGPGIGEGSGADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPGAEGQIAFES 109
LS PG G GSG+ P P PEP GS + + + + AV AEGQ +
Sbjct: 26 LSPPGSGPGSGSRHGSARPGPT---PEPSGS--LGAALDSSLRAAVAFK--AEGQRCYRE 78
Query: 110 SKFIQLILKGNEVYVQI 126
KF + I K + +Q+
Sbjct: 79 KKFREAIGKYHRALLQL 95
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.0 bits (79), Expect = 0.026
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 5 KREPPAAPLLLRVLPQL-SAMSLRPSWLEVETAPAQVL-GGASSGRGLSGPGIGEGSGAD 62
K +PP P P L A P W V+ + Q L G G SGPG+ G GA
Sbjct: 121 KPDPPLPPAFGAPPPPLFDAAFPTPQWGIVDLSGHQHLFGNLKRGGPASGPGVTPGLGAP 180
Query: 63 EARPEPSPVSCYPEPG 78
P P P PG
Sbjct: 181 AGAPGPLPAPSQTPPG 196
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 35.0 bits (79), Expect = 0.026
Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 5 KREPPAAPLLLRVLPQL-SAMSLRPSWLEVETAPAQVL-GGASSGRGLSGPGIGEGSGAD 62
K +PP P P L A P W V+ + Q L G G SGPG+ G GA
Sbjct: 121 KPDPPLPPAFGAPPPPLFDAAFPTPQWGIVDLSGHQHLFGNLKRGGPASGPGVTPGLGAP 180
Query: 63 EARPEPSPVSCYPEPG 78
P P P PG
Sbjct: 181 AGAPGPLPAPSQTPPG 196
>gi|40068487 von Willebrand factor A domain containing 1 isoform 2
[Homo sapiens]
Length = 233
Score = 35.0 bits (79), Expect = 0.026
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 17 VLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSGADEARPEPSPVSCYPE 76
++P+ + LRP L V T P + +G G SGP G G + P+P PE
Sbjct: 71 LVPESNVRLLRPQILRVRTRPGE------AGPGASGPESGAGPAPTQLAALPAPEEAGPE 124
Query: 77 -------------PGGSPRIRSPAVTGEKVAVGHSPGAEGQ 104
+P + S A G V G G E Q
Sbjct: 125 RIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQ 165
>gi|40068485 von Willebrand factor A domain containing 1 isoform 1
[Homo sapiens]
Length = 445
Score = 35.0 bits (79), Expect = 0.026
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 19/101 (18%)
Query: 17 VLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSGADEARPEPSPVSCYPE 76
++P+ + LRP L V T P + +G G SGP G G + P+P PE
Sbjct: 283 LVPESNVRLLRPQILRVRTRPGE------AGPGASGPESGAGPAPTQLAALPAPEEAGPE 336
Query: 77 -------------PGGSPRIRSPAVTGEKVAVGHSPGAEGQ 104
+P + S A G V G G E Q
Sbjct: 337 RIVISHARPRSLRVSWAPALGSAAALGYHVQFGPLRGGEAQ 377
>gi|239757110 PREDICTED: hypothetical protein [Homo sapiens]
Length = 192
Score = 34.7 bits (78), Expect = 0.034
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 28 PSWLEVETAPAQVLGGASSG-RGLSGPGIGEGSGADEARPEPSPVSCYPEPGGSPRIRSP 86
P W+ T P L G S G R G G G+ G E +P P+P G +P +P
Sbjct: 91 PRWVPTLTVPQATLPGGSQGHRRCRGEGEGQRRGCVEKQPRPTPTPACELTGLAPAPPTP 150
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 34.3 bits (77), Expect = 0.045
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 41 LGGASSGRGLSGPGIGEGSGADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSPG 100
L G RGL GP G +E P P P P GSP R PA + + PG
Sbjct: 1055 LRGFPGDRGLPGPVGALGLKGNEGPPGP------PGPAGSPGERGPAGAAGPIGIPGRPG 1108
Query: 101 AEG 103
+G
Sbjct: 1109 PQG 1111
>gi|5453844 TAF6-like RNA polymerase II [Homo sapiens]
Length = 622
Score = 34.3 bits (77), Expect = 0.045
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Query: 5 KREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSGADEA 64
K+EP AAP +R +PQL+A ++ +P SG G GP G A E+
Sbjct: 472 KKEPAAAPDSVRKMPQLTASAI--------VSPHGDESPRGSGGG--GPASASGPAASES 521
Query: 65 RPEPSPVSCYPEPGGSPRIRSP 86
RP P G+PR + P
Sbjct: 522 RPLPR----VHRARGAPRQQGP 539
>gi|71274152 hypothetical protein LOC388939 [Homo sapiens]
Length = 1288
Score = 33.5 bits (75), Expect = 0.076
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 64 ARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGHSP 99
A+P PS V P P SPR+ SP T + + H P
Sbjct: 1019 AQPSPSAVQTPPSPPVSPRVLSPPTTKRRTSPPHQP 1054
>gi|5803080 macrophage receptor with collagenous structure [Homo
sapiens]
Length = 520
Score = 33.1 bits (74), Expect = 0.100
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 43 GASSGRGLSGPGIGEGSGADEARPEPSPVSCYP-EPGGSPRIRSPAVTGEKVAVGHSPGA 101
G G+ GP +GS D RP P ++ +P G + V G AVGH PGA
Sbjct: 262 GMKGDAGVMGPPGAQGSKGDFGRPGPPGLAGFPGAKGDQGQPGLQGVPGPPGAVGH-PGA 320
Query: 102 EGQ 104
+G+
Sbjct: 321 KGE 323
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 33.1 bits (74), Expect = 0.100
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 42 GGASSGRGLSGPGIGEGSGAD-------EARPEPSPVSCYPEPGGSPRIRSPAV--TGEK 92
G A G G + PG G GSG D RP+P P P P PR PA +
Sbjct: 1142 GRAPVGTG-TAPGGGPGSGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRRLEPAPPRARPE 1200
Query: 93 VAVGHSPGA 101
VA PGA
Sbjct: 1201 VAPEGEPGA 1209
Score = 30.8 bits (68), Expect = 0.49
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 27 RPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSGADEARPEPSPVSCYPEPGGSPRIRSP 86
RP W E A A GG + G G GP +G DE E + PG + R P
Sbjct: 1279 RPPW---EGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEEEDEEAAA---PGAAAGPRGP 1332
Score = 30.0 bits (66), Expect = 0.84
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 44 ASSGRGLSGPGIGEGSGADEARPEPSPVSCYP-----EPGGSPRIRSP 86
AS G GLS PG G E SP +P E G PR R+P
Sbjct: 806 ASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEEEGVPRPRAP 853
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 33.1 bits (74), Expect = 0.100
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 3 PTKREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSGAD 62
PT PPA P + P V T P Q G + GPG G G
Sbjct: 149 PTPTPPPAVTSAPPGAPPPT-----PPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPG 203
Query: 63 EARPEPSPVSCYPEPGGSPRIRSP 86
P+ + P+PGG P + +P
Sbjct: 204 PGGPKGGKMPGGPKPGGGPGLSTP 227
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 33.1 bits (74), Expect = 0.100
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 6 REPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQV--LGGASSGRGLSGPGIGEGSGADE 63
R P L LP +A + P + +P + + G S G + + + A +
Sbjct: 330 RPHPLGAALPGPLPASAAKAGGPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQ 389
Query: 64 ARPEPSPVSCYPEPGGS 80
A P PSPV+ P PG S
Sbjct: 390 ASPSPSPVAAPPAPGSS 406
>gi|4502739 cyclin-dependent kinase 5, regulatory subunit 2 [Homo
sapiens]
Length = 367
Score = 33.1 bits (74), Expect = 0.100
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 27 RPSWLEVETAPAQVLG-GASSGRGLSGPGIGEGSGADEARPEPSPVSCYPEPGGSP-RIR 84
+P + V T PA SG + G G G P P+P P PGGSP R+
Sbjct: 119 KPLAVPVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVI 178
Query: 85 SPAVTGE 91
A TGE
Sbjct: 179 VQASTGE 185
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 32.3 bits (72), Expect = 0.17
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 41 LGGASSGRGLSGPGIGEGSGADEARPEP-SPVSCY--------------PEPGGSPRIRS 85
L G + +S PG G G P P +P SC P P G R
Sbjct: 425 LAGRAGQSKISDPGPGPGGVGGAPLPPPGAPRSCIRIRARFPAPPAPPAPPPRGPKRKLY 484
Query: 86 PAVTGEK-VAV-GHSPGAEGQIAFESSKFIQLILKG 119
AV G K +AV HSP EG+I + ++++ G
Sbjct: 485 SAVPGRKFIAVKAHSPQGEGEIPLHRGEAVKVLSIG 520
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 32.0 bits (71), Expect = 0.22
Identities = 28/82 (34%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 26 LRPSWLEVETAPAQVLG-----GASSGRGLSGPGIGEGSGADEARPEPSPVS-CYPEPGG 79
L P EV A A LG G+ +G +GP GA A PEP P P GG
Sbjct: 43 LAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPA-APAEGAPGAAPEPPPAGRARPGGGG 101
Query: 80 SPRIRSPAVTGEKVAVGHSPGA 101
R P+ V G +P A
Sbjct: 102 PQRPGPPSPRRPLVPAGPAPPA 123
Score = 31.6 bits (70), Expect = 0.29
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 11/113 (9%)
Query: 3 PTKREPPAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSGAD 62
P PPAAP P + P+ + P G ++ + P + G+
Sbjct: 252 PAAPSPPAAPA--PAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSA 309
Query: 63 EARPEPSP-------VSCYPEPGGSPRIRSPAVTGE--KVAVGHSPGAEGQIA 106
A P P+P VS P PG + +P V E K V +P A +A
Sbjct: 310 GAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLA 362
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 32.0 bits (71), Expect = 0.22
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 32 EVETAPAQVLGGASSGRGLSGPGIGEGSGADEARPEPSPVS 72
E E A +L G S G G G G G G G E EPSP S
Sbjct: 50 EAEAVAALLLNGGSGGGGGGGGG-GVGGGEAETMSEPSPES 89
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 32.0 bits (71), Expect = 0.22
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 32 EVETAPAQVLGGASSGRGLSGPGIGEGSGADEARPEPSPVS 72
E E A +L G S G G G G G G G E EPSP S
Sbjct: 50 EAEAVAALLLNGGSGGGGGGGGG-GVGGGEAETMSEPSPES 89
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 31.6 bits (70), Expect = 0.29
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 54 GIGEGSGADEARPEPSPVSCYPEPGGSPRIRSPA 87
G+G + + P P P YPEPG P +PA
Sbjct: 55 GLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPA 88
>gi|19923812 oxysterol-binding protein-like protein 10 [Homo
sapiens]
Length = 764
Score = 31.6 bits (70), Expect = 0.29
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 46 SGRGLSGPGIGEGSGADEARPEPSPVSCYPEPGGSPRIRSPAVTG 90
+GRG+S G G +R P V+ P GG R R PA+ G
Sbjct: 36 AGRGVSSRSAAAGLGGGGSRSSPGSVAASPSGGGGRR-REPALEG 79
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 31.6 bits (70), Expect = 0.29
Identities = 23/66 (34%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 44 ASSGRGLSGPGI---------GEGSGADEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVA 94
+ SGRG GPG G G A E P P S P PG R P E +
Sbjct: 432 SGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGP----EGKS 487
Query: 95 VGHSPG 100
SPG
Sbjct: 488 SSRSPG 493
>gi|187608767 E74-like factor 4 [Homo sapiens]
Length = 663
Score = 31.2 bits (69), Expect = 0.38
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 9 PAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPG 54
P APL+L LPQL A + RP+ AP V G +G PG
Sbjct: 477 PGAPLILSGLPQLLAGANRPT----NPAPPTVTGAGPAGPSSQPPG 518
>gi|4503555 E74-like factor 4 [Homo sapiens]
Length = 663
Score = 31.2 bits (69), Expect = 0.38
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 9 PAAPLLLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPG 54
P APL+L LPQL A + RP+ AP V G +G PG
Sbjct: 477 PGAPLILSGLPQLLAGANRPT----NPAPPTVTGAGPAGPSSQPPG 518
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 31.2 bits (69), Expect = 0.38
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 5 KREPPAAPL----LLRVLPQLSAMSLRPSWLEVETAPAQVLGGASSGRGLSGPGIGEGSG 60
+R+P AA L LL L + + L +L ++ ++S +GL P EGSG
Sbjct: 806 ERQPGAASLTAAQLLDTLGRSGSDRLPSRFLSAQSH-------STSPQGLDSPLPLEGSG 858
Query: 61 ADEA---RPEPSPVSCYPEPGGSP 81
A + + SP S YPE GSP
Sbjct: 859 AHQVLHNESKGSPTSAYPERKGSP 882
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 31.2 bits (69), Expect = 0.38
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 43 GASSGRGLSG-PGIGEGSGA--DEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGH-- 97
GA RG G PG+ GA D P+ + +P P G P P TG + G
Sbjct: 1189 GAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG 1248
Query: 98 SPGAEG 103
SPGA G
Sbjct: 1249 SPGAPG 1254
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 31.2 bits (69), Expect = 0.38
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 43 GASSGRGLSG-PGIGEGSGA--DEARPEPSPVSCYPEPGGSPRIRSPAVTGEKVAVGH-- 97
GA RG G PG+ GA D P+ + +P P G P P TG + G
Sbjct: 1189 GAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSRG 1248
Query: 98 SPGAEG 103
SPGA G
Sbjct: 1249 SPGAPG 1254
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,897,103
Number of Sequences: 37866
Number of extensions: 475449
Number of successful extensions: 2637
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 2352
Number of HSP's gapped (non-prelim): 468
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.