Search of human proteins with 194248090

Search of human proteins with 194248090

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|194248090 sulfatase modifying factor 2 isoform e precursor
[Homo sapiens]
         (358 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|194248090 sulfatase modifying factor 2 isoform e precursor [H...   748   0.0  
gi|194248088 sulfatase modifying factor 2 isoform b precursor [H...   523   e-148
gi|194248087 sulfatase modifying factor 2 isoform c precursor [H...   478   e-135
gi|226437577 sulfatase modifying factor 2 isoform g [Homo sapiens]    310   2e-84
gi|194248084 sulfatase modifying factor 2 isoform d precursor [H...   269   2e-72
gi|38202250 sulfatase modifying factor 1 [Homo sapiens]               218   5e-57
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]       33   0.51 
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]       33   0.51 
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]        33   0.51 
gi|239757832 PREDICTED: hypothetical protein [Homo sapiens]            32   1.1  
gi|239752343 PREDICTED: hypothetical protein [Homo sapiens]            32   1.1  
gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo ...    32   1.1  
gi|118600963 Nik related kinase [Homo sapiens]                         32   1.1  
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     31   1.5  
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    30   2.6  
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          30   2.6  
gi|66528642 nuclear receptor subfamily 3, group C, member 1 isof...    30   3.3  
gi|66528611 nuclear receptor subfamily 3, group C, member 1 isof...    30   3.3  
gi|66528586 nuclear receptor subfamily 3, group C, member 1 isof...    30   3.3  
gi|66528563 nuclear receptor subfamily 3, group C, member 1 isof...    30   3.3  
gi|66528530 nuclear receptor subfamily 3, group C, member 1 isof...    30   3.3  
gi|4504133 nuclear receptor subfamily 3, group C, member 1 isofo...    30   3.3  
gi|66528677 nuclear receptor subfamily 3, group C, member 1 isof...    30   3.3  
gi|7657307 LIM domains containing 1 [Homo sapiens]                     30   3.3  
gi|239756223 PREDICTED: ankyrin repeat domain-containing protein...    30   4.4  
gi|239745040 PREDICTED: ankyrin repeat domain-containing protein...    30   4.4  
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 30   4.4  
gi|210147453 nuclear localized factor 3 [Homo sapiens]                 30   4.4  
gi|4758062 cytokine receptor-like factor 1 [Homo sapiens]              30   4.4  
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p...    29   5.7  

>gi|194248090 sulfatase modifying factor 2 isoform e precursor [Homo
           sapiens]
          Length = 358

 Score =  748 bits (1931), Expect = 0.0
 Identities = 358/358 (100%), Positives = 358/358 (100%)

Query: 1   MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG 60
           MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG
Sbjct: 1   MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG 60

Query: 61  TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS 120
           TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS
Sbjct: 61  TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS 120

Query: 121 DELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCAWRGK 180
           DELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCAWRGK
Sbjct: 121 DELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCAWRGK 180

Query: 181 RLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPA 240
           RLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPA
Sbjct: 181 RLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPA 240

Query: 241 QNNYGWATLQIQPQTTSVSAVLQTQAGRQGSCKQPGGDKEKSLLGSLSFPGHVANSAIPS 300
           QNNYGWATLQIQPQTTSVSAVLQTQAGRQGSCKQPGGDKEKSLLGSLSFPGHVANSAIPS
Sbjct: 241 QNNYGWATLQIQPQTTSVSAVLQTQAGRQGSCKQPGGDKEKSLLGSLSFPGHVANSAIPS 300

Query: 301 SRASASGKNFPFPVSHPSVAGASHQGRRGLSLLCFGEGAQCVLTMAGGQVFLLEAKYY 358
           SRASASGKNFPFPVSHPSVAGASHQGRRGLSLLCFGEGAQCVLTMAGGQVFLLEAKYY
Sbjct: 301 SRASASGKNFPFPVSHPSVAGASHQGRRGLSLLCFGEGAQCVLTMAGGQVFLLEAKYY 358


>gi|194248088 sulfatase modifying factor 2 isoform b precursor [Homo
           sapiens]
          Length = 320

 Score =  523 bits (1346), Expect = e-148
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 1   MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG 60
           MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG
Sbjct: 1   MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG 60

Query: 61  TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS 120
           TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS
Sbjct: 61  TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS 120

Query: 121 DELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCAWRGK 180
           DELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCAWRGK
Sbjct: 121 DELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCAWRGK 180

Query: 181 RLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPA 240
           RLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPA
Sbjct: 181 RLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPA 240

Query: 241 QNNYG 245
           QNNYG
Sbjct: 241 QNNYG 245


>gi|194248087 sulfatase modifying factor 2 isoform c precursor [Homo
           sapiens]
          Length = 305

 Score =  478 bits (1230), Expect = e-135
 Identities = 230/245 (93%), Positives = 230/245 (93%), Gaps = 15/245 (6%)

Query: 1   MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG 60
           MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG
Sbjct: 1   MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG 60

Query: 61  TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS 120
           TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS
Sbjct: 61  TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS 120

Query: 121 DELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCAWRGK 180
           DELRNKATQPMK               PAGPGSGIRERLEHPVLHVSWNDARAYCAWRGK
Sbjct: 121 DELRNKATQPMK---------------PAGPGSGIRERLEHPVLHVSWNDARAYCAWRGK 165

Query: 181 RLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPA 240
           RLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPA
Sbjct: 166 RLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPA 225

Query: 241 QNNYG 245
           QNNYG
Sbjct: 226 QNNYG 230


>gi|226437577 sulfatase modifying factor 2 isoform g [Homo sapiens]
          Length = 213

 Score =  310 bits (793), Expect = 2e-84
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 108 MFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVS 167
           MFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVS
Sbjct: 1   MFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVS 60

Query: 168 WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAED 227
           WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAED
Sbjct: 61  WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAED 120

Query: 228 GFHGVSPVNAFPAQNNYG 245
           GFHGVSPVNAFPAQNNYG
Sbjct: 121 GFHGVSPVNAFPAQNNYG 138


>gi|194248084 sulfatase modifying factor 2 isoform d precursor [Homo
           sapiens]
          Length = 236

 Score =  269 bits (688), Expect = 2e-72
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG 60
           MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG
Sbjct: 1   MRAHAQRGRGCTRRSAAVLMARHGLPLLPLLSLLVGAWLKLGNGQATSMVQLQGGRFLMG 60

Query: 61  TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS 120
           TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS
Sbjct: 61  TNSPDSRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAEMFGWSFVFEDFVS 120

Query: 121 DELRNKATQPMK 132
           DELRNKATQPMK
Sbjct: 121 DELRNKATQPMK 132



 Score = 68.6 bits (166), Expect = 8e-12
 Identities = 37/71 (52%), Positives = 43/71 (60%), Gaps = 10/71 (14%)

Query: 178 RGKRLPTEEE---WEFAARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSP 234
           R K+  TE E   W F     +  ++       +   T   +GKFPKGDKAEDGFHGVSP
Sbjct: 98  REKKYRTEAEMFGWSFVFEDFVSDEL-------RNKATQPMKGKFPKGDKAEDGFHGVSP 150

Query: 235 VNAFPAQNNYG 245
           VNAFPAQNNYG
Sbjct: 151 VNAFPAQNNYG 161


>gi|38202250 sulfatase modifying factor 1 [Homo sapiens]
          Length = 374

 Score =  218 bits (556), Expect = 5e-57
 Identities = 103/203 (50%), Positives = 132/203 (65%), Gaps = 5/203 (2%)

Query: 47  TSMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTE 105
           + MV +  G F MGT+ P   +DGE P R  T+  F +D + V+N +F  FV    Y TE
Sbjct: 89  SKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTE 148

Query: 106 AEMFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLH 165
           AE FG SFVFE  +S++++    Q + +  WWLPV+ A WR P GP S I  R +HPVLH
Sbjct: 149 AEKFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHPEGPDSTILHRPDHPVLH 208

Query: 166 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKG 222
           VSWNDA AYC W GKRLPTE EWE++ RGGL  +++PWGN  QP   +  N+WQG+FP  
Sbjct: 209 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVT 268

Query: 223 DKAEDGFHGVSPVNAFPAQNNYG 245
           +  EDGF G +PV+AFP  N YG
Sbjct: 269 NTGEDGFQGTAPVDAFP-PNGYG 290


>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
          Length = 660

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 220 PKGDKAEDGFHGVSPVNAFPAQNNYGWATLQIQPQTTSVSAVLQTQAGRQGSCKQPGGDK 279
           P+G K E G  G  P    P  N+   A   +  + T      Q+QA  QG    PG   
Sbjct: 165 PQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGE--QSQASIQGPPGPPGPPG 222

Query: 280 EKSLLGSLSFPGHVANSAIPSSRASASGKNFPFPVSHPSVAGASHQGRRG 329
               LG    PG +    +P           P P   P + G  + GR+G
Sbjct: 223 PSGPLGHPGLPGPMGPPGLPGP---------PGPKGDPGIQG--YHGRKG 261


>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
          Length = 686

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 220 PKGDKAEDGFHGVSPVNAFPAQNNYGWATLQIQPQTTSVSAVLQTQAGRQGSCKQPGGDK 279
           P+G K E G  G  P    P  N+   A   +  + T      Q+QA  QG    PG   
Sbjct: 203 PQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGE--QSQASIQGPPGPPGPPG 260

Query: 280 EKSLLGSLSFPGHVANSAIPSSRASASGKNFPFPVSHPSVAGASHQGRRG 329
               LG    PG +    +P           P P   P + G  + GR+G
Sbjct: 261 PSGPLGHPGLPGPMGPPGLPGP---------PGPKGDPGIQG--YHGRKG 299


>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
          Length = 698

 Score = 32.7 bits (73), Expect = 0.51
 Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 13/110 (11%)

Query: 220 PKGDKAEDGFHGVSPVNAFPAQNNYGWATLQIQPQTTSVSAVLQTQAGRQGSCKQPGGDK 279
           P+G K E G  G  P    P  N+   A   +  + T      Q+QA  QG    PG   
Sbjct: 203 PQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGE--QSQASIQGPPGPPGPPG 260

Query: 280 EKSLLGSLSFPGHVANSAIPSSRASASGKNFPFPVSHPSVAGASHQGRRG 329
               LG    PG +    +P           P P   P + G  + GR+G
Sbjct: 261 PSGPLGHPGLPGPMGPPGLPGP---------PGPKGDPGIQG--YHGRKG 299


>gi|239757832 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 503

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 168 WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQV-YPWGNWFQPNRTNLWQGKFPKGDKAE 226
           W D     +WRG   P+  EW+ A+ G L   V  P   W  P R +  +  F + D  +
Sbjct: 136 WADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWENPERGSKSRLSF-QVDPQQ 194

Query: 227 DGFHGVSPVNAFPAQNNYGWATLQIQPQTTSVSAVLQTQAGRQ---GSCKQPG 276
               G + +N   + +    + L +      +  ++ T+ G Q   GS K+PG
Sbjct: 195 PSAEGPAGLNTDDSDSADESSDLPV------IRVIISTKEGSQAKPGSPKKPG 241


>gi|239752343 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 518

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 168 WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQV-YPWGNWFQPNRTNLWQGKFPKGDKAE 226
           W D     +WRG   P+  EW+ A+ G L   V  P   W  P R +  +  F + D  +
Sbjct: 136 WADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWENPERGSKSRLSF-QVDPQQ 194

Query: 227 DGFHGVSPVNAFPAQNNYGWATLQIQPQTTSVSAVLQTQAGRQ---GSCKQPG 276
               G + +N   + +    + L +      +  ++ T+ G Q   GS K+PG
Sbjct: 195 PSAEGPAGLNTDDSDSADESSDLPV------IRVIISTKEGSQAKPGSPKKPG 241


>gi|239746856 PREDICTED: hypothetical protein XP_002343859 [Homo
           sapiens]
          Length = 518

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 168 WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQV-YPWGNWFQPNRTNLWQGKFPKGDKAE 226
           W D     +WRG   P+  EW+ A+ G L   V  P   W  P R +  +  F + D  +
Sbjct: 136 WADLEVGPSWRGALSPSPGEWQQASAGPLHLSVPGPGPAWENPERGSKSRLSF-QVDPQQ 194

Query: 227 DGFHGVSPVNAFPAQNNYGWATLQIQPQTTSVSAVLQTQAGRQ---GSCKQPG 276
               G + +N   + +    + L +      +  ++ T+ G Q   GS K+PG
Sbjct: 195 PSAEGPAGLNTDDSDSADESSDLPV------IRVIISTKEGSQAKPGSPKKPG 241


>gi|118600963 Nik related kinase [Homo sapiens]
          Length = 1582

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 267  GRQGSCKQPGGD----KEKSLLGSLSFPGHVANSAIPSSRASASGKNFPFPVSHPSVAGA 322
            GR GSCKQ G D    KE++  G   +  H AN +   S AS           H +  G+
Sbjct: 996  GRDGSCKQDGYDGSRGKEEAYRG---YGSHTANRSHGGSAASEDNAAIGDQEEHAANIGS 1052

Query: 323  SHQGRRG 329
              +G  G
Sbjct: 1053 ERRGSEG 1059


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 15/55 (27%), Positives = 21/55 (38%)

Query: 275  PGGDKEKSLLGSLSFPGHVANSAIPSSRASASGKNFPFPVSHPSVAGASHQGRRG 329
            PG   +K   G + FPG   +  IP S+        P P   P + G+      G
Sbjct: 1179 PGAKGDKGSKGEVGFPGLAGSPGIPGSKGEQGFMGPPGPQGQPGLPGSPGHATEG 1233



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 31/114 (27%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 220 PKGDKAEDGFHGVSPVNAFPA-QNNYGWATLQIQPQTTSVSAVLQT--QAGRQGSCKQPG 276
           PKGDK   G  G++  +  P      G   +   P +     V+ T  Q G  G    PG
Sbjct: 841 PKGDKGAQGLPGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPG 900

Query: 277 GDKEKSLLGSLSFPGHVANSAIPSSRASASGKNFP-FPVSHPSVAGASHQGRRG 329
              EK   G   FPG       P  +        P  P S   V   S +G++G
Sbjct: 901 LPGEK---GDHGFPGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKG 951



 Score = 29.3 bits (64), Expect = 5.7
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 220 PKGDKAEDGFHGVSPV-NAFPAQNNYGWATL-----QIQPQTTSVSAVLQT-QAGRQGSC 272
           PKGDK + G  G   V      Q    +AT      + +P    +  V +  + G+ G  
Sbjct: 227 PKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGVGEKGEPGKPGPR 286

Query: 273 KQPGGDKEKSLLGSLSFPGHVANSAIPSSRASASGKNFPFPVSHPS-VAGASHQGRRG 329
            +PG D +K   GS  FPG      +   +     K    P   P  V G    G +G
Sbjct: 287 GKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKG 344


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 15/120 (12%)

Query: 225 AEDGFHGVSPVNAFPAQNNYGWATLQIQPQTTSVSAVLQTQAGRQGSCKQPGGDKEKSLL 284
           A    +G  P  A+PA      AT      +T  ++  Q+   +Q +  QP    ++S  
Sbjct: 113 AAQSAYGTQP--AYPAYGQQPAATAPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSY 170

Query: 285 GSLSFPGHVANSAIP-------------SSRASASGKNFPFPVSHPSVAGASHQGRRGLS 331
           G  S  G    ++ P             S ++S+ G+   F   HPS  G   Q   G S
Sbjct: 171 GQQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQSSFRQDHPSSMGVYGQESGGFS 230


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 25/102 (24%), Positives = 34/102 (33%)

Query: 220  PKGDKAEDGFHGVSPVNAFPAQNNYGWATLQIQPQTTSVSAVLQTQAGRQGSCKQPGGDK 279
            PKG K E G  G+      P        T    PQ    SA  + + G  G+  +PG   
Sbjct: 1252 PKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPG 1311

Query: 280  EKSLLGSLSFPGHVANSAIPSSRASASGKNFPFPVSHPSVAG 321
                 G+   PG   +  +P  R     +    P   P   G
Sbjct: 1312 RAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPG 1353



 Score = 28.5 bits (62), Expect = 9.7
 Identities = 34/135 (25%), Positives = 45/135 (33%), Gaps = 7/135 (5%)

Query: 195  GLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPAQNNYGWATLQIQPQ 254
            GL G   P G    P +      K  KGD +EDG  G+      P +         I P+
Sbjct: 1427 GLPGSPGPQGPVGPPGK------KGEKGD-SEDGAPGLPGQPGSPGEQGPRGPPGAIGPK 1479

Query: 255  TTSVSAVLQTQAGRQGSCKQPGGDKEKSLLGSLSFPGHVANSAIPSSRASASGKNFPFPV 314
                      +AG +G    PG    + L G    PG       P        K  P   
Sbjct: 1480 GDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRP 1539

Query: 315  SHPSVAGASHQGRRG 329
              P+V G +  G +G
Sbjct: 1540 GDPAVVGPAVAGPKG 1554


>gi|66528642 nuclear receptor subfamily 3, group C, member 1 isoform
           beta [Homo sapiens]
          Length = 742

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 274 QPGGDKEKSLLGSLSFPGHVANS---AIPSSRASASGKNFPFPVSHPSVAGASHQGRRGL 330
           Q  GD   + LG+L+FPG    S   + PS R   S      P S  S A      +  L
Sbjct: 368 QGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSS-----PPSSSSTATTGPPPK--L 420

Query: 331 SLLCFGEGAQC---VLTMAGGQVFLLEA 355
            L+C  E + C   VLT    +VF   A
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRA 448


>gi|66528611 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 274 QPGGDKEKSLLGSLSFPGHVANS---AIPSSRASASGKNFPFPVSHPSVAGASHQGRRGL 330
           Q  GD   + LG+L+FPG    S   + PS R   S      P S  S A      +  L
Sbjct: 368 QGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSS-----PPSSSSTATTGPPPK--L 420

Query: 331 SLLCFGEGAQC---VLTMAGGQVFLLEA 355
            L+C  E + C   VLT    +VF   A
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRA 448


>gi|66528586 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 274 QPGGDKEKSLLGSLSFPGHVANS---AIPSSRASASGKNFPFPVSHPSVAGASHQGRRGL 330
           Q  GD   + LG+L+FPG    S   + PS R   S      P S  S A      +  L
Sbjct: 368 QGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSS-----PPSSSSTATTGPPPK--L 420

Query: 331 SLLCFGEGAQC---VLTMAGGQVFLLEA 355
            L+C  E + C   VLT    +VF   A
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRA 448


>gi|66528563 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 274 QPGGDKEKSLLGSLSFPGHVANS---AIPSSRASASGKNFPFPVSHPSVAGASHQGRRGL 330
           Q  GD   + LG+L+FPG    S   + PS R   S      P S  S A      +  L
Sbjct: 368 QGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSS-----PPSSSSTATTGPPPK--L 420

Query: 331 SLLCFGEGAQC---VLTMAGGQVFLLEA 355
            L+C  E + C   VLT    +VF   A
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRA 448


>gi|66528530 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 274 QPGGDKEKSLLGSLSFPGHVANS---AIPSSRASASGKNFPFPVSHPSVAGASHQGRRGL 330
           Q  GD   + LG+L+FPG    S   + PS R   S      P S  S A      +  L
Sbjct: 368 QGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSS-----PPSSSSTATTGPPPK--L 420

Query: 331 SLLCFGEGAQC---VLTMAGGQVFLLEA 355
            L+C  E + C   VLT    +VF   A
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRA 448


>gi|4504133 nuclear receptor subfamily 3, group C, member 1 isoform
           alpha [Homo sapiens]
          Length = 777

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 274 QPGGDKEKSLLGSLSFPGHVANS---AIPSSRASASGKNFPFPVSHPSVAGASHQGRRGL 330
           Q  GD   + LG+L+FPG    S   + PS R   S      P S  S A      +  L
Sbjct: 368 QGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSS-----PPSSSSTATTGPPPK--L 420

Query: 331 SLLCFGEGAQC---VLTMAGGQVFLLEA 355
            L+C  E + C   VLT    +VF   A
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRA 448


>gi|66528677 nuclear receptor subfamily 3, group C, member 1 isoform
           gamma [Homo sapiens]
          Length = 778

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 13/88 (14%)

Query: 274 QPGGDKEKSLLGSLSFPGHVANS---AIPSSRASASGKNFPFPVSHPSVAGASHQGRRGL 330
           Q  GD   + LG+L+FPG    S   + PS R   S      P S  S A      +  L
Sbjct: 368 QGSGDDNLTSLGTLNFPGRTVFSNGYSSPSMRPDVSS-----PPSSSSTATTGPPPK--L 420

Query: 331 SLLCFGEGAQC---VLTMAGGQVFLLEA 355
            L+C  E + C   VLT    +VF   A
Sbjct: 421 CLVCSDEASGCHYGVLTCGSCKVFFKRA 448


>gi|7657307 LIM domains containing 1 [Homo sapiens]
          Length = 676

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 17/139 (12%)

Query: 191 AARGGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGVSPVNAFPAQNNYGWATLQ 250
           ++ G L GQ    G       T LW         +      VSP    P   N   A   
Sbjct: 239 SSEGSLGGQNSGIGGRSSEKPTGLW---------STASSQRVSPGLPSPNLENGAPAVGP 289

Query: 251 IQPQTTSVSAVLQTQAGRQGSCKQPGGDKEKSLLGSLSFPGHVANSAI---PSSRASASG 307
           +QP+T SVSA L     RQG   +        + G +S P           P S  S+S 
Sbjct: 290 VQPRTPSVSAPLALSCPRQGGLPRSNSGLGGEVSGVMSKPNVDPQPWFQDGPKSYLSSSA 349

Query: 308 KNFPFPVSHPSVAGASHQG 326
                P S P+    S QG
Sbjct: 350 -----PSSSPAGLDGSQQG 363


>gi|239756223 PREDICTED: ankyrin repeat domain-containing protein
           ENSP00000383090-like [Homo sapiens]
          Length = 270

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 135 LW-WLPVEKAFWR-QPAGPGSGIRERLEHP 162
           +W ++PV++ FW+ Q +GPGSG   R+  P
Sbjct: 21  MWDFMPVDQEFWKPQKSGPGSGSVNRIAKP 50


>gi|239745040 PREDICTED: ankyrin repeat domain-containing protein
           ENSP00000383090-like [Homo sapiens]
          Length = 270

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 135 LW-WLPVEKAFWR-QPAGPGSGIRERLEHP 162
           +W ++PV++ FW+ Q +GPGSG   R+  P
Sbjct: 21  MWDFMPVDQEFWKPQKSGPGSGSVNRIAKP 50


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 41/159 (25%), Positives = 50/159 (31%), Gaps = 29/159 (18%)

Query: 185 EEEWEFAAR--------GGLKGQVYPWGNWFQPNRTNLWQGKFPKGDKAEDGFHGV-SPV 235
           EE W F  +        G L+G   P G+   P          PKGD+   G  G+  P+
Sbjct: 546 EELWMFVRKKLMMEQENGNLRGSPGPKGDMGSPG---------PKGDRGFPGTPGIPGPL 596

Query: 236 NAFPAQNNYGWATLQIQPQTTSVSAVLQTQAGRQGSCKQ-----PGGDKEKSLLGSLSFP 290
                Q   G       P           Q GR+G         P G  EK   G+   P
Sbjct: 597 GHPGPQGPKGQKGSVGDPGMEGPMG----QRGREGPMGPRGEAGPPGSGEKGERGAAGEP 652

Query: 291 GHVANSAIPSSRASASGKNFPFPVSHPSVAGASHQGRRG 329
           G      +P S         P P   P   G   QG RG
Sbjct: 653 GPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGL--QGLRG 689


>gi|210147453 nuclear localized factor 3 [Homo sapiens]
          Length = 421

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 240 AQNNYGWATLQIQPQTTSVSAVLQTQAG------------RQGSCKQPGGD-KEKSLLGS 286
           AQ +YG+A L   P T    ++  ++ G            R+ + K  GGD   +   G+
Sbjct: 144 AQTSYGFAMLAESPHTRRKESLFHSEHGALAQVGSPGAGRRRAAAKANGGDGGPREAGGA 203

Query: 287 LSFPGHVANSAIPSSRASASGKNFPFPVSHPSVA 320
           L  PG   +     + +SA    F  P+   SV+
Sbjct: 204 LMSPGRYFSGGESDTGSSAESSPFGSPLLSRSVS 237


>gi|4758062 cytokine receptor-like factor 1 [Homo sapiens]
          Length = 422

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 13 RRSAAVLMARHGLPLLPLLSLL--VGAWLKLGNGQATSMVQLQGGRFLMGTN 62
          RR  A   AR   PLLPLL LL  +GA  + G+G  T+++  Q    L+G++
Sbjct: 5  RRGPAAQSARRPPPLLPLLLLLCVLGA-PRAGSGAHTAVISPQDPTLLIGSS 55


>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 4 [Homo sapiens]
          Length = 1203

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 247 ATLQIQPQTTSVSAVLQTQAGRQGSCKQPGGDKEKSLLGSLSFPGHVAN--SAIPSSRAS 304
           A LQ    TTSV+  L        +  +P        LG+   P H+    S IPS+  S
Sbjct: 780 APLQAAAATTSVAIALTHHPRLPAAIFRPPPGSGLGNLGAGQTPRHLKRLQSLIPSALGS 839

Query: 305 ASGKNFPFPVSHPSVAGASHQGRRGLS 331
           AS  + P  V  PS +    Q   G S
Sbjct: 840 ASPASSPSQVDTPSSSSFHIQQLAGFS 866


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,507,948
Number of Sequences: 37866
Number of extensions: 766615
Number of successful extensions: 2070
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1945
Number of HSP's gapped (non-prelim): 141
length of query: 358
length of database: 18,247,518
effective HSP length: 103
effective length of query: 255
effective length of database: 14,347,320
effective search space: 3658566600
effective search space used: 3658566600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.