Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NR3C1 Sequence: fasta or formatted (777aa) NCBI GI: 66528586
Description:

nuclear receptor subfamily 3, group C, member 1 isoform alpha

Referenced in:

Organs and Hormones
Nuclear Receptors

Other entries for this name:
alt mRNA [777aa] nuclear receptor subfamily 3, group C, member 1 isoform alpha
alt mRNA [777aa] nuclear receptor subfamily 3, group C, member 1 isoform alpha
alt mRNA [777aa] nuclear receptor subfamily 3, group C, member 1 isoform alpha
alt mRNA [777aa] nuclear receptor subfamily 3, group C, member 1 isoform alpha
alt prot [742aa] nuclear receptor subfamily 3, group C, member 1 isoform beta
alt prot [778aa] nuclear receptor subfamily 3, group C, member 1 isoform gamma
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         37           2
 C cysteine            2.6         20           1
 D aspartate           5.0         39           2
 E glutamate           5.9         46           2
 F phenylalanine       3.1         24           2
 G glycine             6.7         52           2
 H histidine           1.4         11           1
 I isoleucine          4.4         34           2
 K lysine              6.6         51           3
 L leucine            10.4         81           4
 M methionine          3.0         23           1
 N asparagine          5.1         40           1
 P proline             5.8         45           3
 Q glutamine           5.4         42           3
 R arginine            3.5         27           2
 S serine             10.9         85           4
 T threonine           6.3         49           2
 V valine              5.4         42           2
 W tryptophan          0.9          7           1
 Y tyrosine            2.8         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear receptor subfamily 3, group C, member 1 isof... 
NR3C1                 1.000   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 1.000   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 1.000   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 1.000   nuclear receptor subfamily 3, group C, member 1 isofo...
NR3C1                 0.997   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C1                 0.935   nuclear receptor subfamily 3, group C, member 1 isof...
NR3C2                 0.290   nuclear receptor subfamily 3, group C, member 2 [Ho...
PGR                   0.263   progesterone receptor 
AR                    0.238   androgen receptor isoform 2 
AR                    0.238   androgen receptor isoform 1 
ESRRG                 0.101   estrogen-related receptor gamma isoform 2 
ESRRG                 0.101   estrogen-related receptor gamma isoform 2 
ESRRG                 0.101   estrogen-related receptor gamma isoform 1 
ESRRG                 0.101   estrogen-related receptor gamma isoform 2 
ESRRB                 0.096   estrogen-related receptor beta 
ESRRA                 0.092   estrogen-related receptor alpha 
ESR1                  0.091   estrogen receptor alpha isoform 4 
ESR1                  0.091   estrogen receptor alpha isoform 3 
ESR1                  0.091   estrogen receptor alpha isoform 2 
ESR1                  0.091   estrogen receptor alpha isoform 1 
ESR2                  0.088   estrogen receptor beta isoform 2 
ESR2                  0.088   estrogen receptor beta isoform 2 
ESR2                  0.088   estrogen receptor beta isoform 1 
NR4A2                 0.062   nuclear receptor subfamily 4, group A, member 2 [Homo...
NR2F6                 0.061   nuclear receptor subfamily 2, group F, member 6 [Hom...
NR4A1                 0.060   nuclear receptor subfamily 4, group A, member 1 [Hom...
NR4A1                 0.060   nuclear receptor subfamily 4, group A, member 1 [Hom...
RXRA                  0.059   retinoid X receptor, alpha 
RXRB                  0.058   retinoid X receptor, beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press