Search of human proteins with 194239659

Search of human proteins with 194239659

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|194239659 transmembrane and coiled-coil domains 4 [Homo
sapiens]
         (634 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|194239659 transmembrane and coiled-coil domains 4 [Homo sapiens]  1265   0.0  
gi|14149631 ring finger protein 112 [Homo sapiens]                     37   0.056
gi|45504371 family with sequence similarity 9, member B [Homo sa...    37   0.073
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    37   0.073
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    37   0.073
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    37   0.073
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]       36   0.12 
gi|83415184 transmembrane and tetratricopeptide repeat containin...    34   0.36 
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p...    33   0.61 
gi|29826279 tubby isoform b [Homo sapiens]                             33   0.80 
gi|19923167 tubby isoform a [Homo sapiens]                             33   0.80 
gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]       33   0.80 
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ...    33   0.80 
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]            33   0.80 
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]            33   0.80 
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]            33   0.80 
gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]            33   0.80 
gi|168229256 ankyrin repeat domain 41 [Homo sapiens]                   33   0.80 
gi|226437579 NAC alpha domain containing [Homo sapiens]                33   1.0  
gi|126352608 elastin isoform e precursor [Homo sapiens]                33   1.0  
gi|126352446 elastin isoform d precursor [Homo sapiens]                33   1.0  
gi|126352322 elastin isoform c precursor [Homo sapiens]                33   1.0  
gi|126352700 elastin isoform b precursor [Homo sapiens]                33   1.0  
gi|126352440 elastin isoform a precursor [Homo sapiens]                33   1.0  
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   1.0  
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   1.0  
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   1.0  
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]     33   1.0  
gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens]          33   1.0  
gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens]          33   1.0  

>gi|194239659 transmembrane and coiled-coil domains 4 [Homo sapiens]
          Length = 634

 Score = 1265 bits (3274), Expect = 0.0
 Identities = 634/634 (100%), Positives = 634/634 (100%)

Query: 1   MAMWNRPCQRLPQQPLVAEPTAEGEPHLPTGRELTEANRFAYAALCGISLSQLFPEPEHS 60
           MAMWNRPCQRLPQQPLVAEPTAEGEPHLPTGRELTEANRFAYAALCGISLSQLFPEPEHS
Sbjct: 1   MAMWNRPCQRLPQQPLVAEPTAEGEPHLPTGRELTEANRFAYAALCGISLSQLFPEPEHS 60

Query: 61  SFCTEFMAGLVQWLELSEAVLPTMTAFASGLGGEGADVFVQILLKDPILKDDPTVITQDL 120
           SFCTEFMAGLVQWLELSEAVLPTMTAFASGLGGEGADVFVQILLKDPILKDDPTVITQDL
Sbjct: 61  SFCTEFMAGLVQWLELSEAVLPTMTAFASGLGGEGADVFVQILLKDPILKDDPTVITQDL 120

Query: 121 LSFSLKDGHYDARARVLVCHMTSLLQVPLEELDVLEEMFLESLKEIKEEESEMAEASRKK 180
           LSFSLKDGHYDARARVLVCHMTSLLQVPLEELDVLEEMFLESLKEIKEEESEMAEASRKK
Sbjct: 121 LSFSLKDGHYDARARVLVCHMTSLLQVPLEELDVLEEMFLESLKEIKEEESEMAEASRKK 180

Query: 181 KENRRKWKRYLLIGLATVGGGTVIGVTGGLAAPLVAAGAATIIGSAGAAALGSAAGIAIM 240
           KENRRKWKRYLLIGLATVGGGTVIGVTGGLAAPLVAAGAATIIGSAGAAALGSAAGIAIM
Sbjct: 181 KENRRKWKRYLLIGLATVGGGTVIGVTGGLAAPLVAAGAATIIGSAGAAALGSAAGIAIM 240

Query: 241 TSLFGAAGAGLTGYKMKKRVGAIEEFTFLPLTEGRQLHITIAVTGWLASGKYRTFSAPWA 300
           TSLFGAAGAGLTGYKMKKRVGAIEEFTFLPLTEGRQLHITIAVTGWLASGKYRTFSAPWA
Sbjct: 241 TSLFGAAGAGLTGYKMKKRVGAIEEFTFLPLTEGRQLHITIAVTGWLASGKYRTFSAPWA 300

Query: 301 ALAHSREQYCLAWEAKYLMELGNALETILSGLANMVAQEALKYTVLSGIVAALTWPASLL 360
           ALAHSREQYCLAWEAKYLMELGNALETILSGLANMVAQEALKYTVLSGIVAALTWPASLL
Sbjct: 301 ALAHSREQYCLAWEAKYLMELGNALETILSGLANMVAQEALKYTVLSGIVAALTWPASLL 360

Query: 361 SVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLGARVIYFCLQEMAQE 420
           SVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLGARVIYFCLQEMAQE
Sbjct: 361 SVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLGARVIYFCLQEMAQE 420

Query: 421 KDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYRTSSVQLRVA 480
           KDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYRTSSVQLRVA
Sbjct: 421 KDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYRTSSVQLRVA 480

Query: 481 GLQPVLLQDRRVENVDLTSVVSGHLDYAKQMDAILKAVGIRTKPGWDEKGLLLAPGCLPS 540
           GLQPVLLQDRRVENVDLTSVVSGHLDYAKQMDAILKAVGIRTKPGWDEKGLLLAPGCLPS
Sbjct: 481 GLQPVLLQDRRVENVDLTSVVSGHLDYAKQMDAILKAVGIRTKPGWDEKGLLLAPGCLPS 540

Query: 541 EEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGLDQSEGASLPAAA 600
           EEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGLDQSEGASLPAAA
Sbjct: 541 EEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGLDQSEGASLPAAA 600

Query: 601 SPERPPICSHGMDPNPLGCPDCACKTQGPSTGLD 634
           SPERPPICSHGMDPNPLGCPDCACKTQGPSTGLD
Sbjct: 601 SPERPPICSHGMDPNPLGCPDCACKTQGPSTGLD 634


>gi|14149631 ring finger protein 112 [Homo sapiens]
          Length = 632

 Score = 37.0 bits (84), Expect = 0.056
 Identities = 31/82 (37%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 195 LATVGGGTVIGVTGGLAAPLVAAG--AATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLT 252
           LA VGG    G+ G LA  +V AG  AA +   AG  A G+A G      + G  GAGL 
Sbjct: 548 LAAVGGAVGAGLMG-LAGGVVGAGMAAAALAAEAGMVAAGAAVGATGAAVVGGGVGAGLA 606

Query: 253 GYKMKKRVGAIEEFTFLPLTEG 274
                  VG +E+     L EG
Sbjct: 607 A-----TVGCMEKEEDERLLEG 623


>gi|45504371 family with sequence similarity 9, member B [Homo
           sapiens]
          Length = 186

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 149 LEELDVLEEMFLESLKEIKEEESEMAEASRKKKENRRKWKRY 190
           L+ L+VLEE   +  KE +EEE E  E  R  +E ++KW++Y
Sbjct: 103 LKLLNVLEEYITDEQKEEEEEEGEEEELIRIFQEQQKKWQQY 144


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 519 GIRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTD 578
           G+ + P     G+++ PG   +    +AAA +++G      GQ Q P     +   + T 
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTS 367

Query: 579 PSQAQVPVGLDQSEGASLPAAASPERPP 606
           PS       + +S G S P  +SP  PP
Sbjct: 368 PSP------MMRSYGGSYPEYSSPSAPP 389



 Score = 30.0 bits (66), Expect = 6.8
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 199 GGGTVIGVTG-GLAAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLTG 253
           GGG   G  G G  A   AA AA   G  G    GS+AG  +++S     G  + G
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMG 323



 Score = 30.0 bits (66), Expect = 6.8
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 542 EPRQAAAAASSGETPHQVGQT---QGPISGDTSKLAMST----DPSQAQVPVGLDQSEG- 593
           E   ++A ++SG T  Q  Q+   Q P S   S    S      PS    PVG +QS   
Sbjct: 635 EATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 694

Query: 594 ----ASLPAAASPERPP 606
               AS+P +  P +PP
Sbjct: 695 PISPASIPGSQMPPQPP 711


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 519 GIRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTD 578
           G+ + P     G+++ PG   +    +AAA +++G      GQ Q P     +   + T 
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTS 367

Query: 579 PSQAQVPVGLDQSEGASLPAAASPERPP 606
           PS       + +S G S P  +SP  PP
Sbjct: 368 PSP------MMRSYGGSYPEYSSPSAPP 389



 Score = 30.0 bits (66), Expect = 6.8
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 199 GGGTVIGVTG-GLAAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLTG 253
           GGG   G  G G  A   AA AA   G  G    GS+AG  +++S     G  + G
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMG 323



 Score = 30.0 bits (66), Expect = 6.8
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 542 EPRQAAAAASSGETPHQVGQT---QGPISGDTSKLAMST----DPSQAQVPVGLDQSEG- 593
           E   ++A ++SG T  Q  Q+   Q P S   S    S      PS    PVG +QS   
Sbjct: 622 EATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 681

Query: 594 ----ASLPAAASPERPP 606
               AS+P +  P +PP
Sbjct: 682 PISPASIPGSQMPPQPP 698


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 36.6 bits (83), Expect = 0.073
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 519 GIRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTD 578
           G+ + P     G+++ PG   +    +AAA +++G      GQ Q P     +   + T 
Sbjct: 308 GVLSSPRQQGGGMMMGPGGGGAASLSKAAAGSAAGGFQRFAGQNQHPSGATPTLNQLLTS 367

Query: 579 PSQAQVPVGLDQSEGASLPAAASPERPP 606
           PS       + +S G S P  +SP  PP
Sbjct: 368 PSP------MMRSYGGSYPEYSSPSAPP 389



 Score = 30.0 bits (66), Expect = 6.8
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 199 GGGTVIGVTG-GLAAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLTG 253
           GGG   G  G G  A   AA AA   G  G    GS+AG  +++S     G  + G
Sbjct: 268 GGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGVLSSPRQQGGGMMMG 323



 Score = 30.0 bits (66), Expect = 6.8
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 542 EPRQAAAAASSGETPHQVGQT---QGPISGDTSKLAMST----DPSQAQVPVGLDQSEG- 593
           E   ++A ++SG T  Q  Q+   Q P S   S    S      PS    PVG +QS   
Sbjct: 622 EATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSG 681

Query: 594 ----ASLPAAASPERPP 606
               AS+P +  P +PP
Sbjct: 682 PISPASIPGSQMPPQPP 698


>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
          Length = 1243

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 14/101 (13%)

Query: 532 LLAPGCLPSEEP-RQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGLDQ 590
           + +P C PS  P    ++  SS  +PH            +S L  S+  S  + PV L Q
Sbjct: 831 ITSPPCHPSPSPFSPISSQVSSNPSPHPT----------SSPLPFSS--STPEFPVPLSQ 878

Query: 591 SEGASLPAAASPERPPICSHGMDPNPLGCPDCACKTQGPST 631
              +SLP  + P   P CS     +P   P C   +  PST
Sbjct: 879 CPWSSLPTTSPPTFSPTCSQVTLSSPF-FPPCPSTSSFPST 918


>gi|83415184 transmembrane and tetratricopeptide repeat containing 1
           [Homo sapiens]
          Length = 774

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 8   CQRLPQQPLVAEPTA-EGEPHLPTGRELTEANRFAYAALCGISLSQLFPEPEHSSF 62
           C R PQQP   +P++  G PH   G++     RF +    G   S L PEP+ S F
Sbjct: 142 CPRSPQQPGSPQPSSLPGHPHRENGKQ----QRFPHKGAWGGCHSPLPPEPKSSGF 193


>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 4 [Homo sapiens]
          Length = 1203

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 535 PGCLPSEEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVG----LDQ 590
           P  +    P        +G+TP  + + Q  I       + ++ PSQ   P      + Q
Sbjct: 802 PAAIFRPPPGSGLGNLGAGQTPRHLKRLQSLIPSALGSASPASSPSQVDTPSSSSFHIQQ 861

Query: 591 SEGASLPAAASPERPPICSHGMDPNPLGCPDCACKTQGPSTGL 633
             G S PA  SP  P   S    P P  C   +  T  PS G+
Sbjct: 862 LAGFSAPAGLSPLLP---SSSSSPPPGACGSPSAPT--PSAGV 899


>gi|29826279 tubby isoform b [Homo sapiens]
          Length = 506

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 539 PSEEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGL------DQSE 592
           P+   R  AAA + G+      + +G   G +   A++ D S+AQ PV +      D ++
Sbjct: 104 PASAKRTKAAATAGGQGGAARKEKKGKHKGTSGPAALAEDKSEAQGPVQILTVGQSDHAQ 163

Query: 593 GASLPAAASPERP 605
            A   AA   ERP
Sbjct: 164 DAGETAAGGGERP 176


>gi|19923167 tubby isoform a [Homo sapiens]
          Length = 561

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)

Query: 539 PSEEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGL------DQSE 592
           P+   R  AAA + G+      + +G   G +   A++ D S+AQ PV +      D ++
Sbjct: 159 PASAKRTKAAATAGGQGGAARKEKKGKHKGTSGPAALAEDKSEAQGPVQILTVGQSDHAQ 218

Query: 593 GASLPAAASPERP 605
            A   AA   ERP
Sbjct: 219 DAGETAAGGGERP 231


>gi|122937398 dynein, cytoplasmic 2, heavy chain 1 [Homo sapiens]
          Length = 4314

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 531  LLLAPGCLPSEEPRQAAAAASSGETPHQVGQTQG 564
            ++++PG  PS+E ++ A A  SGE  HQV   QG
Sbjct: 3732 IIISPGADPSQELQELANAERSGECYHQVAMGQG 3765


>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
           dystrophy [Homo sapiens]
          Length = 468

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 27/101 (26%), Positives = 34/101 (33%), Gaps = 2/101 (1%)

Query: 534 APGCLPSEEPRQAAAAASSGET--PHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGLDQS 591
           APGCL S    +    A +GE   P  +  T     GD      +  P +      L   
Sbjct: 359 APGCLASAPAMRRPLGAQAGEVELPRLLVPTPPRRPGDPGPSPNADSPGKRVGQAHLCPV 418

Query: 592 EGASLPAAASPERPPICSHGMDPNPLGCPDCACKTQGPSTG 632
                  A  P + P   H   P P G   CA  T+ P  G
Sbjct: 419 ALLERAQAVPPRKGPAGCHPAGPGPPGMCPCAEATEEPEAG 459


>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2061

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 520 IRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSGETPH--------QVGQTQGPISGDTS 571
           +R    W  + +   PGCL S+  R   A A +  T H         +    G + GD S
Sbjct: 221 LRGYRSWAHRAIAPTPGCLYSDRSRAHRAIAPARGTKHGGRSWACRSIAPKPGSLCGDRS 280

Query: 572 KLAMSTDPSQAQVPVGLDQSEGASLPAAAS 601
           + + + DP+      G  ++  A  P   S
Sbjct: 281 QASRAIDPTLGARRGGRSRAHRAIAPTPGS 310


>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2061

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 520 IRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSGETPH--------QVGQTQGPISGDTS 571
           +R    W  + +   PGCL S+  R   A A +  T H         +    G + GD S
Sbjct: 221 LRGYRSWAHRAIAPTPGCLYSDRSRAHRAIAPARGTKHGGRSWACRSIAPKPGSLCGDRS 280

Query: 572 KLAMSTDPSQAQVPVGLDQSEGASLPAAAS 601
           + + + DP+      G  ++  A  P   S
Sbjct: 281 QASRAIDPTLGARRGGRSRAHRAIAPTPGS 310


>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 2028

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 520 IRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSGETPH--------QVGQTQGPISGDTS 571
           +R    W  + +   PGCL S+  R   A A +  T H         +    G + GD S
Sbjct: 221 LRGYRSWAHRAIAPTPGCLYSDRSRAHRAIAPARGTKHGGRSWACRSIAPKPGSLCGDRS 280

Query: 572 KLAMSTDPSQAQVPVGLDQSEGASLPAAAS 601
           + + + DP+      G  ++  A  P   S
Sbjct: 281 QASRAIDPTLGARRGGRSRAHRAIAPTPGS 310


>gi|113430175 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1934

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 520 IRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSGETPH--------QVGQTQGPISGDTS 571
           +R    W  + +   PGCL S+  R   A A +  T H         +    G + GD S
Sbjct: 221 LRGYRSWAHRAIAPTPGCLYSDRSRAHRAIAPARGTKHGGRSWACRSIAPKPGSLCGDRS 280

Query: 572 KLAMSTDPSQAQVPVGLDQSEGASLPAAAS 601
           + + + DP+      G  ++  A  P   S
Sbjct: 281 QASRAIDPTLGARRGGRSRAHRAIAPTPGS 310


>gi|168229256 ankyrin repeat domain 41 [Homo sapiens]
          Length = 615

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 481 GLQPVLLQDRRVENVDLTSVVSGHLDYAKQMDAILKAVGIRTKPGWDEKGLLLAPGCLPS 540
           G  P L     +  +DL ++  GHL+ A+ +  +      RT+ G + +         P 
Sbjct: 99  GADPALRDQDGLRPLDL-ALQQGHLECARVLQDLDTRTRTRTRIGAETQE--------PE 149

Query: 541 EEPRQAAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGLD 589
             P     +  + ET   +   + P  GD   + +  DP    +PV L+
Sbjct: 150 PAPGTPGLSGPTDETLDSIALQKQPCRGDNRDIGLEADPGPPSLPVPLE 198


>gi|226437579 NAC alpha domain containing [Homo sapiens]
          Length = 1562

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 534  APGCLPSEEPRQAAAAASSGETPHQVGQTQG-PISGDTSKLAMSTDPSQAQVPVGLDQSE 592
            AP   P+ +  +      S E PH+V    G P+      LA     +    P+G D S 
Sbjct: 1172 APTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQPPENLAKGQPSTPVDRPLGPDPSA 1231

Query: 593  GASLPAAASPERPPICSHGMDPNPLGCPD 621
              +L  AA P   P       P P  C D
Sbjct: 1232 PGTLAGAALPPLEP-------PAPCLCQD 1253


>gi|126352608 elastin isoform e precursor [Homo sapiens]
          Length = 705

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 200 GGTVIGVTGGLAA--PLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLTG 253
           G  V GV GGL A   +   G     G A AAA   AA  A    L GAAG G  G
Sbjct: 577 GAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLG 632



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 195 LATVGGGTVIGVTG------GLAAPLVAAGAATIIGSAGAAALGSAAGIA-----IMTSL 243
           L  VGG  V GV G      G+A     A AA    +A AA  G+AAG+          +
Sbjct: 274 LPGVGGAGVPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGV 333

Query: 244 FGAAGAGLTG 253
            G  GAG+ G
Sbjct: 334 VGVPGAGVPG 343



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 191 LLIGLATVGGGTVIGVTGGL--AAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAG 248
           +L GL  +GG   +G+ GG+  A P  AA AA     A    L  AAG+  +    G  G
Sbjct: 583 VLGGLGALGG---VGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGL----GVGG 635

Query: 249 AGLTG 253
            G+ G
Sbjct: 636 LGVPG 640


>gi|126352446 elastin isoform d precursor [Homo sapiens]
          Length = 711

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 200 GGTVIGVTGGLAA--PLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLTG 253
           G  V GV GGL A   +   G     G A AAA   AA  A    L GAAG G  G
Sbjct: 601 GAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLG 656



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 195 LATVGGGTVIGVTG------GLAAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAG 248
           L  VGG  V GV G      G+A     A AA    +A AA  G+AAG+      FG   
Sbjct: 279 LPGVGGAGVPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGV 338

Query: 249 AGLTG 253
            G+ G
Sbjct: 339 VGVPG 343



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 191 LLIGLATVGGGTVIGVTGGL--AAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAG 248
           +L GL  +GG   +G+ GG+  A P  AA AA     A    L  AAG+  +    G  G
Sbjct: 607 VLGGLGALGG---VGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGL----GVGG 659

Query: 249 AGLTG 253
            G+ G
Sbjct: 660 LGVPG 664


>gi|126352322 elastin isoform c precursor [Homo sapiens]
          Length = 692

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 200 GGTVIGVTGGLAA--PLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLTG 253
           G  V GV GGL A   +   G     G A AAA   AA  A    L GAAG G  G
Sbjct: 582 GAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLG 637



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 195 LATVGGGTVIGVTG------GLAAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAG 248
           L  VGG  V GV G      G+A     A AA    +A AA  G+AAG+      FG   
Sbjct: 279 LPGVGGAGVPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGV 338

Query: 249 AGLTG 253
            G+ G
Sbjct: 339 VGVPG 343



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 191 LLIGLATVGGGTVIGVTGGL--AAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAG 248
           +L GL  +GG   +G+ GG+  A P  AA AA     A    L  AAG+  +    G  G
Sbjct: 588 VLGGLGALGG---VGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGL----GVGG 640

Query: 249 AGLTG 253
            G+ G
Sbjct: 641 LGVPG 645


>gi|126352700 elastin isoform b precursor [Homo sapiens]
          Length = 677

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 200 GGTVIGVTGGLAA--PLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLTG 253
           G  V GV GGL A   +   G     G A AAA   AA  A    L GAAG G  G
Sbjct: 567 GAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLG 622



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 195 LATVGGGTVIGVTG------GLAAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAG 248
           L  VGG  V GV G      G+A     A AA    +A AA  G+AAG+      FG   
Sbjct: 264 LPGVGGAGVPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGV 323

Query: 249 AGLTG 253
            G+ G
Sbjct: 324 VGVPG 328



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 191 LLIGLATVGGGTVIGVTGGL--AAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAG 248
           +L GL  +GG   +G+ GG+  A P  AA AA     A    L  AAG+  +    G  G
Sbjct: 573 VLGGLGALGG---VGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGL----GVGG 625

Query: 249 AGLTG 253
            G+ G
Sbjct: 626 LGVPG 630


>gi|126352440 elastin isoform a precursor [Homo sapiens]
          Length = 724

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 24/56 (42%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 200 GGTVIGVTGGLAA--PLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLTG 253
           G  V GV GGL A   +   G     G A AAA   AA  A    L GAAG G  G
Sbjct: 596 GAAVPGVLGGLGALGGVGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGLG 651



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 195 LATVGGGTVIGVTG------GLAAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAG 248
           L  VGG  V GV G      G+A     A AA    +A AA  G+AAG+      FG   
Sbjct: 274 LPGVGGAGVPGVPGAIPGIGGIAGVGTPAAAAAAAAAAKAAKYGAAAGLVPGGPGFGPGV 333

Query: 249 AGLTG 253
            G+ G
Sbjct: 334 VGVPG 338



 Score = 30.8 bits (68), Expect = 4.0
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 191 LLIGLATVGGGTVIGVTGGL--AAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAG 248
           +L GL  +GG   +G+ GG+  A P  AA AA     A    L  AAG+  +    G  G
Sbjct: 602 VLGGLGALGG---VGIPGGVVGAGPAAAAAAAKAAAKAAQFGLVGAAGLGGL----GVGG 654

Query: 249 AGLTG 253
            G+ G
Sbjct: 655 LGVPG 659


>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 534  APGCLPSEEPRQAAAAASSGETPHQVGQTQG-PISGDTSKLAMSTDPSQAQVPVGLDQSE 592
            AP   P+ +  +      S E PH+V    G P+      LA     +    P+G D S 
Sbjct: 1132 APTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQPPENLAKGQPSTPVDRPLGPDPSA 1191

Query: 593  GASLPAAASPERPPICSHGMDPNPLGCPD 621
              +L  AA P   P       P P  C D
Sbjct: 1192 PGTLAGAALPPLEP-------PAPCLCQD 1213


>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 534  APGCLPSEEPRQAAAAASSGETPHQVGQTQG-PISGDTSKLAMSTDPSQAQVPVGLDQSE 592
            AP   P+ +  +      S E PH+V    G P+      LA     +    P+G D S 
Sbjct: 1132 APTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQPPENLAKGQPSTPVDRPLGPDPSA 1191

Query: 593  GASLPAAASPERPPICSHGMDPNPLGCPD 621
              +L  AA P   P       P P  C D
Sbjct: 1192 PGTLAGAALPPLEP-------PAPCLCQD 1213


>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1562

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 534  APGCLPSEEPRQAAAAASSGETPHQVGQTQG-PISGDTSKLAMSTDPSQAQVPVGLDQSE 592
            AP   P+ +  +      S E PH+V    G P+      LA     +    P+G D S 
Sbjct: 1172 APTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQPPENLAKGQPSTPVDRPLGPDPSA 1231

Query: 593  GASLPAAASPERPPICSHGMDPNPLGCPD 621
              +L  AA P   P       P P  C D
Sbjct: 1232 PGTLAGAALPPLEP-------PAPCLCQD 1253


>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
          Length = 1522

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 534  APGCLPSEEPRQAAAAASSGETPHQVGQTQG-PISGDTSKLAMSTDPSQAQVPVGLDQSE 592
            AP   P+ +  +      S E PH+V    G P+      LA     +    P+G D S 
Sbjct: 1132 APTSAPTSQQPEPVLGLGSVEQPHEVPSVLGTPLLQPPENLAKGQPSTPVDRPLGPDPSA 1191

Query: 593  GASLPAAASPERPPICSHGMDPNPLGCPD 621
              +L  AA P   P       P P  C D
Sbjct: 1192 PGTLAGAALPPLEP-------PAPCLCQD 1213


>gi|226051634 zinc finger protein 414 isoform 1 [Homo sapiens]
          Length = 390

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 546 AAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGLDQSEGASLPAAASPERP 605
           A A  SS ET  +V     P +  +S ++    P QA  P   ++     +   +SP  P
Sbjct: 14  ATAEPSSSETDKEVLSPAVPAAAPSSSMSEEPGPEQAATPPVWERGGAGGMQQGSSP-AP 72

Query: 606 PICSHGMDPNP 616
             C  G  P+P
Sbjct: 73  DSCQPGPGPSP 83


>gi|226051591 zinc finger protein 414 isoform 2 [Homo sapiens]
          Length = 312

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 546 AAAAASSGETPHQVGQTQGPISGDTSKLAMSTDPSQAQVPVGLDQSEGASLPAAASPERP 605
           A A  SS ET  +V     P +  +S ++    P QA  P   ++     +   +SP  P
Sbjct: 14  ATAEPSSSETDKEVLSPAVPAAAPSSSMSEEPGPEQAATPPVWERGGAGGMQQGSSP-AP 72

Query: 606 PICSHGMDPNP 616
             C  G  P+P
Sbjct: 73  DSCQPGPGPSP 83


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,655,119
Number of Sequences: 37866
Number of extensions: 1155889
Number of successful extensions: 5876
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 5669
Number of HSP's gapped (non-prelim): 248
length of query: 634
length of database: 18,247,518
effective HSP length: 108
effective length of query: 526
effective length of database: 14,157,990
effective search space: 7447102740
effective search space used: 7447102740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.