Guide to the Human Genome
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Name: TMCO4 Sequence: fasta or formatted (634aa) NCBI GI: 194239659
Description:

transmembrane and coiled-coil domains 4

Referenced in:

Coiled-Coil Proteins
Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         73           5
 C cysteine            2.2         14           1
 D aspartate           3.6         23           2
 E glutamate           7.1         45           3
 F phenylalanine       2.5         16           1
 G glycine             9.3         59           3
 H histidine           2.1         13           1
 I isoleucine          4.6         29           2
 K lysine              4.1         26           3
 L leucine            12.1         77           3
 M methionine          2.4         15           1
 N asparagine          1.6         10           1
 P proline             5.8         37           2
 Q glutamine           4.4         28           2
 R arginine            4.6         29           2
 S serine              6.8         43           2
 T threonine           5.2         33           1
 V valine              6.5         41           2
 W tryptophan          1.7         11           1
 Y tyrosine            1.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane and coiled-coil domains 4 
RNF112                0.010   ring finger protein 112 
FAM9B                 0.010   family with sequence similarity 9, member B 
ARID1B                0.010   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.010   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.010   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
WNK4                  0.009   WNK lysine deficient protein kinase 4 
TMTC1                 0.007   transmembrane and tetratricopeptide repeat containin...
HCN4                  0.006   hyperpolarization activated cyclic nucleotide-gated p...
TUB                   0.006   tubby isoform b 
TUB                   0.006   tubby isoform a 
DYNC2H1               0.006   dynein, cytoplasmic 2, heavy chain 1 
LOC652586             0.006   PREDICTED: similar to facioscapulohumeral muscular ...
LOC728317             0.006   PREDICTED: hypothetical protein 
LOC728317             0.006   PREDICTED: hypothetical protein 
LOC728317             0.006   PREDICTED: hypothetical protein 
LOC728307             0.006   PREDICTED: hypothetical protein 
ANKLE1                0.006   ankyrin repeat domain 41 
NACAD                 0.006   NAC alpha domain containing 
ELN                   0.006   elastin isoform e precursor 
ELN                   0.006   elastin isoform d precursor 
ELN                   0.006   elastin isoform c precursor 
ELN                   0.006   elastin isoform b precursor 
ELN                   0.006   elastin isoform a precursor 
NACAD                 0.006   PREDICTED: NAC alpha domain containing 
NACAD                 0.006   PREDICTED: NAC alpha domain containing 
NACAD                 0.006   PREDICTED: NAC alpha domain containing 
NACAD                 0.006   PREDICTED: NAC alpha domain containing 
ZNF414                0.006   zinc finger protein 414 isoform 1 
ZNF414                0.006   zinc finger protein 414 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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