Guide to the Human Genome
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Name: FAM9B Sequence: fasta or formatted (186aa) NCBI GI: 45504371
Description:

family with sequence similarity 9, member B

Referenced in:

Spindle, M phase, and Meiosis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          9           2
 C cysteine            1.6          3           1
 D aspartate           9.1         17           1
 E glutamate          17.7         33           6
 F phenylalanine       3.2          6           1
 G glycine             2.7          5           1
 H histidine           2.7          5           1
 I isoleucine          2.2          4           1
 K lysine             12.9         24           2
 L leucine             7.5         14           2
 M methionine          2.2          4           1
 N asparagine          2.7          5           1
 P proline             1.6          3           1
 Q glutamine           4.8          9           2
 R arginine            9.1         17           2
 S serine              3.2          6           1
 T threonine           5.9         11           1
 V valine              3.2          6           1
 W tryptophan          1.1          2           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 9, member B 
FAM9A                 0.485   family with sequence similarity 9, member A 
FAM9C                 0.417   family with sequence similarity 9, member C 
SYCP3                 0.146   synaptonemal complex protein 3 
LOC100288837          0.070   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100133599          0.068   PREDICTED: hypothetical protein 
LOC100294088          0.062   PREDICTED: hypothetical protein, partial 
GIGYF2                0.056   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.056   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.056   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.056   GRB10 interacting GYF protein 2 isoform b 
LOC100286959          0.056   PREDICTED: hypothetical protein XP_002343921 
TCHH                  0.056   trichohyalin 
LOC100131202          0.054   PREDICTED: hypothetical protein 
WDR87                 0.054   NYD-SP11 protein 
LOC647042             0.054   PREDICTED: hypothetical protein isoform 1 
RNF20                 0.054   ring finger protein 20 
CENPE                 0.054   centromere protein E 
CCDC30                0.051   coiled-coil domain containing 30 
BAZ1A                 0.051   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.051   bromodomain adjacent to zinc finger domain, 1A isofo...
MPHOSPH10             0.048   M-phase phosphoprotein 10 
NKAP                  0.048   NFKB activating protein 
LOC100133599          0.048   PREDICTED: hypothetical protein 
ATRX                  0.048   transcriptional regulator ATRX isoform 2 
ATRX                  0.048   transcriptional regulator ATRX isoform 1 
ANKRD11               0.048   ankyrin repeat domain 11 
EIF5B                 0.048   eukaryotic translation initiation factor 5B 
ZC3H13                0.048   zinc finger CCCH-type containing 13 
CENPF                 0.048   centromere protein F 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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